TomoSeq data search

Data search

Results for MligTC455_26998

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_26998

220

4.59

Mlig455_038740

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.276

Region-enriched R5: 2.342/0.00395

Mlig455_038740 {REF} {Length: 2233} {TRANSSPLICED} {RNA1509_40603} {RNA1310_21094.1} {RNA815_3123}

Cumulative graph for MligTC455_26998

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.8	2.786	0.16856	0.79362
RegionR2	0.419	2.786	0.67618	1.00000
RegionR3	0.373	2.786	0.68719	1.00000
RegionR4	0.84	2.786	0.39826	0.72477
RegionR5	2.342	2.786	0.00030	0.00395
RegionR6	0.021	2.786	0.84955	1.00000
RegionR7	0.903	2.786	0.42025	1.00000
RegionR8	0.903	2.786	0.51926	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.81	2.786	0.99987	1.00000
RegenerationR2	-0.15	2.786	0.79800	0.98907
RegenerationR3	0.061	2.786	0.92365	1.00000
RegenerationR4	-0.183	2.786	0.77431	0.97838
RegenerationR5	-1.014	2.786	0.05065	0.36237
RegenerationR6	0.951	2.786	0.15571	0.48249
RegenerationBL	-0.31	2.786	0.71382	1.00000
RegenerationTP	-0.555	2.786	0.57069	0.94495

Genes with expression patterns similar to MligTC455_26998

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_26998	220	4.59	Mlig455_038740	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.276 Region-enriched R5: 2.342/0.00395		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_038740 {REF} {Length: 2233} {TRANSSPLICED} {RNA1509_40603} {RNA1310_21094.1} {RNA815_3123}
2.	MligTC455_21138	143	2.98	Mlig455_015454	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.538	KMT2C	0.966	-	-	-	-	-	0.966	Mlig455_015454 {REF} {Length: 5704} {TRANSSPLICED} {Pfam: SET domain [PF00856.30, score=62.4]; PHD-zinc-finger like domain [PF13832.8, score=30.9]; PHD-like zinc-binding domain [PF13771.8, score=24.0]; F/Y-rich N-terminus [PF05964.16, score=18.5]} {Human: ENSG00000055609, KMT2C, lysine methyltransferase 2C, [Score=216, Expect=3e-56]; ENSG00000167548, KMT2D, lysine methyltransferase 2D, [Score=206, Expect=9e-53]} {Mouse: ENSMUSG00000038056, Kmt2c, lysine (K)-specific methyltransferase 2C, [Score=217, Expect=2e-56]} {Dmel: FBgn0023518, trr, trithorax-related, [Score=184, Expect=2e-46]} {Celegans: WBGene00011729, set-16, Histone-lysine N-methyltransferase, [Score=149, Expect=8e-36]} {Smed: dd_Smed_v6_6838_0_1, dd_Smed_v6_6838_0_1, [Score=208, Expect=2e-54]} {RNA1509_12595, RNA1509_53412} {RNA1310_1313.1, RNA1509_12595, RNA1509_53412} {RNA1509_12595, RNA1509_53412, RNA815_2378}
3.	MligTC455_37669	299	6.23	Mlig455_062380	Neo: - Age: -	PHTF2	0.963	-	-	-	-	-	0.963	Mlig455_062380 {REF} {Length: 6650} {TRANSSPLICED} {Pfam: Male germ-cell putative homeodomain transcription factor [PF12129.10, score=144.1]} {Human: ENSG00000006576, PHTF2, putative homeodomain transcription factor 2, [RH, Score=298, Expect=9e-87]} {Mouse: ENSMUSG00000039987, Phtf2, putative homeodomain transcription factor 2, [RH, Score=299, Expect=2e-87]} {Dmel: FBgn0028579, phtf, [RH, Score=278, Expect=4e-79]} {Smed: dd_Smed_v6_8465_0_1, dd_Smed_v6_8465_0_1, [Score=380, Expect=9e-114]} {RNA1509_18701} {RNA1310_9716} {RNA815_10754}
4.	MligTC455_36844	1436	29.92	Mlig455_069539	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.805 Region-specific R5: 2.454 Region-enriched R5: 2.385/0.00000 Regeneration-downregulated R6: -1.865 Regeneration-depleted R6: -1.865		0.957	-	-	0.957	-	-	-	Mlig455_069539 {REF} {Length: 450} {RNA1509_38851} {RNA1310_51802.2} {RNA815_29233}
5.	MligTC455_45701	1910	39.79	Mlig455_005201	Neo: - Age: Down-Up-Down, logFC(26M/2M)=1.876	NFU1	0.957	-	-	-	-	0.957	-	Mlig455_005201 {REF} {Length: 1048} {TRANSSPLICED} {Pfam: Scaffold protein Nfu/NifU N terminal [PF08712.13, score=105.5]; NifU-like domain [PF01106.19, score=93.5]} {Human: ENSG00000169599, NFU1, NFU1 iron-sulfur cluster scaffold, [RH, Score=248, Expect=9e-83]} {Mouse: ENSMUSG00000029993, Nfu1, NFU1 iron-sulfur cluster scaffold, [RH, Score=251, Expect=8e-84]} {Dmel: FBgn0052857, CG32857, [RH, Score=265, Expect=1e-88]} {Celegans: WBGene00003064, lpd-8, LiPid Depleted, [RH, Score=209, Expect=8e-68]} {RNA1509_6976} {RNA1310_31621, RNA1509_6976} {RNA1509_6976, RNA815_15289}
6.	MligTC455_11425	51	1.07	Mlig455_055295	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_055295 {REF} {Length: 1249} {RNA1509_30699, RNA1509_51687} {RNA1310_28292, RNA1509_30699} {RNA1509_30699, RNA815_16947.1}
7.	MligTC455_33353	166	3.46	Mlig455_007629, Mlig455_058320	Neo: - Age: -		0.954	-	-	-	-	0.954	-	Mlig455_007629 {REF} {Length: 1589} {TRANSSPLICED} {Pfam: GIY-YIG catalytic domain [PF01541.26, score=24.4]} {Smed: dd_Smed_v6_129_2_1, dd_Smed_v6_129_2_1, [Score=46.2, Expect=3e-06]} {RNA1509_36216} {RNA1310_50399.2} {RNA815_22235.1} Mlig455_058320 {REF} {Length: 184} {NoTransDecoderORF} {RNA1310_73857} {RNA815_48208}
8.	MligTC455_38290	222	4.63	Mlig455_045005	Neo: - Age: -	SOAT1	0.954	-	-	-	-	-	0.954	Mlig455_045005 {REF} {Length: 3948} {TRANSSPLICED} {Pfam: MBOAT, membrane-bound O-acyltransferase family [PF03062.21, score=115.6]} {Human: ENSG00000057252, SOAT1, sterol O-acyltransferase 1, [RH, Score=353, Expect=5e-116]} {Mouse: ENSMUSG00000026600, Soat1, sterol O-acyltransferase 1, [RH, Score=359, Expect=2e-118]} {Dmel: FBgn0037612, CG8112, [RH, Score=232, Expect=1e-69]} {Celegans: WBGene00007174, mboa-1, O-acyltransferase, [Score=224, Expect=2e-67]} {Smed: dd_Smed_v6_4278_0_1, dd_Smed_v6_4278_0_1, [RH, Score=390, Expect=5e-131]} {RNA1509_21845} {RNA1310_19155, RNA1509_21845} {RNA1509_21845, RNA815_15179}
9.	MligTC455_36843	1318	27.46	Mlig455_067395	Neo: Irradiation Age: - Region-specific R5: 2.519 Region-enriched R5: 2.477/0.00000		0.953	-	-	0.953	-	-	-	Mlig455_067395 {REF} {Length: 713} {RNA1509_21419, RNA1509_38851} {RNA1310_51802.2, RNA1509_21419, RNA1509_38851} {RNA1509_21419, RNA1509_38851, RNA815_29233}

Berezikov Lab - 2020-2021 © ERIBA