M. lignano Tomo-Seq
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Results for MligTC455_27013

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27013 273 5.69 Mlig455_022606

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.891/0.00110

 Mlig455_022606 {REF} {Length: 2269} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=57.0]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=20.6]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [RH, Score=149, Expect=2e-41]} {RNA1509_48664} {RNA1310_2930, RNA1509_48664} {RNA1509_48664, RNA815_6273}

Cumulative graph for MligTC455_27013

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.576 3.087 0.70136 1.00000
RegionR2 0.708 3.087 0.21082 0.57509
RegionR3 -0.237 3.087 0.64855 1.00000
RegionR4 1.891 3.087 0.00007 0.00110
RegionR5 -1.264 3.087 0.01748 0.08776
RegionR6 -0.306 3.087 0.58141 1.00000
RegionR7 -0.219 3.087 0.76195 1.00000
RegionR8 0.003 3.087 0.99453 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.712 3.087 0.27078 0.97430
RegenerationR2 -0.018 3.087 0.96471 1.00000
RegenerationR3 0.287 3.087 0.59276 0.90470
RegenerationR4 -0.645 3.087 0.16657 0.60187
RegenerationR5 0.457 3.087 0.40876 0.80472
RegenerationR6 0.279 3.087 0.63213 0.88814
RegenerationBL 0.547 3.087 0.41348 0.78286
RegenerationTP -0.403 3.087 0.62566 0.97480


Genes with expression patterns similar to MligTC455_27013

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27013 273 5.69 Mlig455_022606

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.891/0.00110

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_022606 {REF} {Length: 2269} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=57.0]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=20.6]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [RH, Score=149, Expect=2e-41]} {RNA1509_48664} {RNA1310_2930, RNA1509_48664} {RNA1509_48664, RNA815_6273}
2. MligTC455_27014 237 4.94 Mlig455_022608

Neo: Int S/G2/M

Age: -

 5.714 0.921 0.987 0.936 0.957 0.939 0.974 Mlig455_022608 {REF} {Length: 3979} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=56.8]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=21.6]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [RH, Score=148, Expect=5e-41]} {RNA1509_24827, RNA1509_42493, RNA1509_44666, RNA1509_51004} {RNA1310_24000, RNA1509_24827, RNA1509_42493, RNA1509_44666, RNA1509_51004} {RNA1509_24827, RNA1509_42493, RNA1509_44666, RNA1509_51004, RNA815_6273}
3. MligTC455_31744 756 15.76 Mlig455_063640, Mlig455_063642, Mlig455_063643, Mlig455_063644

Neo: -

Age: -

Region-enriched R4: 1.348/0.02100

 5.68 0.966 0.970 0.940 0.924 0.927 0.953

Mlig455_063640 {REF} {Length: 789} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [Score=53.1, Expect=9e-09]} {RNA1509_42493} {RNA1310_2930} {RNA815_5886.1}

Mlig455_063642 {REF} {Length: 3154} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=57.0]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=21.8]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [RH, Score=148, Expect=4e-41]} {RNA1509_48664} {RNA1310_2930} {RNA815_6273}

Mlig455_063643 {REF} {Length: 2392} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=54.7]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=19.7]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=131, Expect=3e-35]} {RNA1509_48664} {RNA1310_2930} {RNA815_6273}

Mlig455_063644 {REF} {Length: 2767} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=56.9]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=20.6]} {Smed: dd_Smed_v6_9783_0_1, dd_Smed_v6_9783_0_1, [RH, Score=149, Expect=2e-41]} {RNA1509_48664} {RNA1310_2930} {RNA815_6273}
4. MligTC455_32782 762 15.86 Mlig455_040963, Mlig455_040976

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.278

Region-specific R4: 3.730

Region-enriched R4: 2.489/0.00000

 1.788 0.829 - - - - 0.959

Mlig455_040963 {REF} {Length: 1784} {tRNA: Pro(AGG), score=70.1} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.2]} {Smed: dd_Smed_v6_11577_0_1, dd_Smed_v6_11577_0_1, [RH, Score=191, Expect=2e-59]} {RNA1509_15984} {RNA1310_6692, RNA1509_15984} {RNA1509_15984, RNA815_14459}

Mlig455_040976 {REF} {Length: 1698} {tRNA: Pro(AGG), score=70.1} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.4]} {Smed: dd_Smed_v6_2174_0_1, dd_Smed_v6_2174_0_1, [RH, Score=189, Expect=2e-58]} {RNA1509_15984} {RNA1310_6692} {RNA815_14459}
5. MligTC455_27702 351 7.32 Mlig455_015011

Neo: Germline

Age: -

Region-specific R4: 4.546

Region-enriched R4: 3.035/0.00000

 MRTFA 1.701 0.746 - - - - 0.955 Mlig455_015011 {REF} {Length: 6690} {TRANSSPLICED} {Pfam: RPEL repeat [PF02755.17, score=45.7]; SAP domain [PF02037.29, score=24.7]} {Human: ENSG00000196588, MRTFA, myocardin related transcription factor A, [RH, Score=78.6, Expect=2e-14]} {Mouse: ENSMUSG00000042292, Mkl1, MKL (megakaryoblastic leukemia)/myocardin-like 1, [RH, Score=79.0, Expect=1e-14]} {Dmel: FBgn0052296, Mrtf, Myocardin-related transcription factor, [RH, Score=80.1, Expect=4e-15]} {Smed: dd_Smed_v6_8558_0_1, dd_Smed_v6_8558_0_1, [RH, Score=51.2, Expect=2e-06]} {RNA1509_6119} {RNA1310_5482} {RNA815_7669.1}
6. MligTC455_40757 148 3.07 Mlig455_020051

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.749

Region-specific R4: 4.608

Region-enriched R4: 3.161/0.00049

 0.956 - - - - - 0.956 Mlig455_020051 {REF} {Length: 2878} {RNA1509_21782} {RNA1310_13352} {RNA815_6162}

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