TomoSeq data search

Data search

Results for MligTC455_27081

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_27081	28	0.57	Mlig455_064122	Neo: - Age: -		Mlig455_064122 {REF} {Length: 4500} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=38.0]} {RNA1509_40708} {RNA1310_33467} {RNA815_14744.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_27081

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	2.885	0.96	0.99994	1.00000
RegionR2	-0.81	0.96	0.99987	1.00000
RegionR3	-1.013	0.96	0.99989	1.00000
RegionR4	0.843	0.96	0.99991	1.00000
RegionR5	-1.005	0.96	0.99987	1.00000
RegionR6	-1.043	0.96	0.99993	1.00000
RegionR7	0.042	0.96	0.99998	1.00000
RegionR8	0.1	0.96	0.99997	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	2.272	0.96	0.82319	1.00000
RegenerationR2	4.755	0.96	0.00041	0.02778
RegenerationR3	2.285	0.96	0.27133	0.70561
RegenerationR4	2.459	0.96	0.19671	0.64197
RegenerationR5	2.517	0.96	0.13532	0.54432
RegenerationR6	4.441	0.96	0.04058	0.25202
RegenerationBL	3.408	0.96	0.11219	0.39571
RegenerationTP	2.238	0.96	0.47938	0.88751

Genes with expression patterns similar to MligTC455_27081

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27081	28	0.57	Mlig455_064122	Neo: - Age: -	2	-	-	-	-	1.000	1.000	Mlig455_064122 {REF} {Length: 4500} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=38.0]} {RNA1509_40708} {RNA1310_33467} {RNA815_14744.1}
2.	MligTC455_32668	488	10.16	Mlig455_057055	Neo: - Age: Up-Down-Down	0.965	-	-	-	-	0.965	-	Mlig455_057055 {REF} {Length: 10617} {RNA1509_13306, RNA1509_29747, RNA1509_41956} {RNA1310_3580, RNA1509_29747, RNA1509_41956} {RNA1509_29747, RNA1509_41956, RNA815_93.1}
3.	MligTC455_27852	38	0.78	Mlig455_007793	Neo: - Age: Up-Down-Down	0.953	-	-	-	-	-	0.953	Mlig455_007793 {REF} {Length: 4563} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=130.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=115.4]; Integrase zinc binding domain [PF17921.3, score=73.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.0]; Integrase core domain [PF00665.28, score=50.6]; DDE superfamily endonuclease [PF13358.8, score=20.1]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=270, Expect=1e-77]} {RNA1509_28802} {RNA1310_131.1, RNA1509_28802} {RNA1509_28802, RNA815_52.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_27081

0.57

Mlig455_064122

Neo: -

Age: -

1.000

Mlig455_064122 {REF} {Length: 4500} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=38.0]} {RNA1509_40708} {RNA1310_33467} {RNA815_14744.1}

MligTC455_32668

488

10.16

Mlig455_057055

Neo: -

Age: Up-Down-Down

0.965

Mlig455_057055 {REF} {Length: 10617} {RNA1509_13306, RNA1509_29747, RNA1509_41956} {RNA1310_3580, RNA1509_29747, RNA1509_41956} {RNA1509_29747, RNA1509_41956, RNA815_93.1}

MligTC455_27852

0.78

Mlig455_007793

Neo: -

Age: Up-Down-Down

0.953

Mlig455_007793 {REF} {Length: 4563} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=130.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=115.4]; Integrase zinc binding domain [PF17921.3, score=73.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.0]; Integrase core domain [PF00665.28, score=50.6]; DDE superfamily endonuclease [PF13358.8, score=20.1]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=270, Expect=1e-77]} {RNA1509_28802} {RNA1310_131.1, RNA1509_28802} {RNA1509_28802, RNA815_52.1}