TomoSeq data search

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Results for MligTC455_27099

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_27099	822	17.13	Mlig455_069623	Neo: - Age: Down-Down-Down Region-enriched R3: 2.203/0.04948 Regeneration-depleted R2: -4.253 Regeneration-depleted R6: -4.165	SAA1	Mlig455_069623 {REF} {Length: 957} {Pfam: Serum amyloid A protein [PF00277.20, score=65.4]} {Human: ENSG00000173432, SAA1, serum amyloid A1, [RH, Score=53.1, Expect=3e-09]; ENSG00000134339, SAA2, serum amyloid A2, [RH, Score=52.8, Expect=4e-09]} {Mouse: ENSMUSG00000040026, Saa3, serum amyloid A 3, [RH, Score=60.8, Expect=3e-12]; ENSMUSG00000074115, Saa1, serum amyloid A 1, [RH, Score=59.7, Expect=8e-12]; ENSMUSG00000057465, Saa2, serum amyloid A 2, [RH, Score=58.9, Expect=8e-12]} {RNA1509_11884, RNA1509_47075} {RNA1310_25670.2, RNA1509_47075} {RNA1509_47075, RNA815_10405}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27099

822

17.13

Mlig455_069623

Neo: -

Age: Down-Down-Down

Region-enriched R3: 2.203/0.04948

Regeneration-depleted R2: -4.253
Regeneration-depleted R6: -4.165

SAA1

Mlig455_069623 {REF} {Length: 957} {Pfam: Serum amyloid A protein [PF00277.20, score=65.4]} {Human: ENSG00000173432, SAA1, serum amyloid A1, [RH, Score=53.1, Expect=3e-09]; ENSG00000134339, SAA2, serum amyloid A2, [RH, Score=52.8, Expect=4e-09]} {Mouse: ENSMUSG00000040026, Saa3, serum amyloid A 3, [RH, Score=60.8, Expect=3e-12]; ENSMUSG00000074115, Saa1, serum amyloid A 1, [RH, Score=59.7, Expect=8e-12]; ENSMUSG00000057465, Saa2, serum amyloid A 2, [RH, Score=58.9, Expect=8e-12]} {RNA1509_11884, RNA1509_47075} {RNA1310_25670.2, RNA1509_47075} {RNA1509_47075, RNA815_10405}

Cumulative graph for MligTC455_27099

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.198	4.314	0.10358	0.67760
RegionR2	0.521	4.314	0.54355	0.91039
RegionR3	2.203	4.314	0.00200	0.04948
RegionR4	1.593	4.314	0.05235	0.19898
RegionR5	0.216	4.314	0.76752	1.00000
RegionR6	0.869	4.314	0.25023	0.83652
RegionR7	-0.167	4.314	0.83527	1.00000
RegionR8	-3.037	4.314	0.01109	0.19987

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.198	4.314	0.44497	1.00000
RegenerationR2	-4.253	4.314	0.00005	0.00778
RegenerationR3	-2.858	4.314	0.00245	0.08594
RegenerationR4	-2.499	4.314	0.00996	0.15074
RegenerationR5	-1.998	4.314	0.04196	0.33622
RegenerationR6	-4.165	4.314	0.00010	0.00903
RegenerationBL	-2.446	4.314	0.02762	0.18412
RegenerationTP	-3.923	4.314	0.00795	0.15019

Genes with expression patterns similar to MligTC455_27099

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27099	822	17.13	Mlig455_069623	Neo: - Age: Down-Down-Down Region-enriched R3: 2.203/0.04948 Regeneration-depleted R2: -4.253 Regeneration-depleted R6: -4.165	SAA1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_069623 {REF} {Length: 957} {Pfam: Serum amyloid A protein [PF00277.20, score=65.4]} {Human: ENSG00000173432, SAA1, serum amyloid A1, [RH, Score=53.1, Expect=3e-09]; ENSG00000134339, SAA2, serum amyloid A2, [RH, Score=52.8, Expect=4e-09]} {Mouse: ENSMUSG00000040026, Saa3, serum amyloid A 3, [RH, Score=60.8, Expect=3e-12]; ENSMUSG00000074115, Saa1, serum amyloid A 1, [RH, Score=59.7, Expect=8e-12]; ENSMUSG00000057465, Saa2, serum amyloid A 2, [RH, Score=58.9, Expect=8e-12]} {RNA1509_11884, RNA1509_47075} {RNA1310_25670.2, RNA1509_47075} {RNA1509_47075, RNA815_10405}
2.	MligTC455_14573	554	11.55	Mlig455_016804	Neo: - Age: Down-Down-Up, logFC(26M/2M)=1.510 Region-enriched R3: 3.924/0.02624		4.083	0.817	0.781	0.791	0.953	-	0.741	Mlig455_016804 {REF} {Length: 2586} {RNA1509_18738} {RNA1310_6737.1} {RNA815_3362}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts