M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27374

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27374 83 1.74 Mlig455_023248

Neo: -

Age: -

 Mlig455_023248 {REF} {Length: 1984} {NoTransDecoderORF} {RNA1509_50272} {RNA1310_63447} {RNA815_25702}

Cumulative graph for MligTC455_27374

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.202 1.724 0.99963 1.00000
RegionR2 -0.501 1.724 0.78213 1.00000
RegionR3 -1.742 1.724 0.96677 1.00000
RegionR4 3.269 1.724 0.04746 0.18615
RegionR5 1.944 1.724 0.12911 0.36451
RegionR6 1.547 1.724 0.24465 0.82993
RegionR7 -2.395 1.724 0.99982 1.00000
RegionR8 -1.922 1.724 0.99980 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.837 1.724 0.99993 1.00000
RegenerationR2 1.828 1.724 0.09215 0.48449
RegenerationR3 2.337 1.724 0.14941 0.57838
RegenerationR4 -0.137 1.724 0.89507 1.00000
RegenerationR5 0.6 1.724 0.65576 0.93412
RegenerationR6 1.451 1.724 0.25030 0.59944
RegenerationBL 4.66 1.724 0.01261 0.11525
RegenerationTP 4.042 1.724 0.12279 0.53155


Genes with expression patterns similar to MligTC455_27374

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27374 83 1.74 Mlig455_023248

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_023248 {REF} {Length: 1984} {NoTransDecoderORF} {RNA1509_50272} {RNA1310_63447} {RNA815_25702}
2. MligTC455_32522 134 2.8 Mlig455_040944

Neo: -

Age: -

 0.982 - - - - - 0.982 Mlig455_040944 {REF} {Length: 2473} {RNA1509_46835} {RNA1310_21335.2} {RNA815_21965}
3. MligTC455_48291 35 0.74 Mlig455_000391

Neo: Irradiation

Age: -

 BUB1B 0.978 - - - - - 0.978 Mlig455_000391 {REF} {Length: 587} {Human: ENSG00000156970, BUB1B, BUB1 mitotic checkpoint serine/threonine kinase B, [Score=45.1, Expect=1e-06]} {Mouse: ENSMUSG00000040084, Bub1b, BUB1B, mitotic checkpoint serine/threonine kinase, [Score=48.1, Expect=5e-08]} {RNA1509_39178} {RNA1310_672.2} {RNA815_19794}
4. MligTC455_50542 61 1.28 Mlig455_033117

Neo: -

Age: logFC(26M/2M)=-1.103

 NFIA 0.977 - - - - - 0.977 Mlig455_033117 {REF} {Length: 3593} {Human: ENSG00000162599, NFIA, nuclear factor I A, [Score=85.1, Expect=1e-16]; ENSG00000147862, NFIB, nuclear factor I B, [Score=84.0, Expect=2e-16]; ENSG00000008441, NFIX, nuclear factor I X, [Score=82.4, Expect=8e-16]; ENSG00000141905, NFIC, nuclear factor I C, [Score=81.6, Expect=1e-15]} {Mouse: ENSMUSG00000028565, Nfia, nuclear factor I/A, [Score=84.3, Expect=6e-17]; ENSMUSG00000008575, Nfib, nuclear factor I/B, [Score=84.3, Expect=1e-16]; ENSMUSG00000055053, Nfic, nuclear factor I/C, [Score=82.8, Expect=2e-16]; ENSMUSG00000001911, Nfix, nuclear factor I/X, [Score=81.3, Expect=1e-15]} {Dmel: FBgn0042696, NfI, Nuclear factor I, [Score=84.3, Expect=1e-16]} {Celegans: WBGene00003592, nfi-1, NFI (Nuclear Factor I) family, [Score=90.5, Expect=1e-18]} {Smed: dd_Smed_v6_12312_0_1, dd_Smed_v6_12312_0_1, [Score=151, Expect=1e-37]} {RNA1310_40008.1} {RNA815_37863}
5. MligTC455_17936 83 1.72 Mlig455_015624

Neo: -

Age: -

 0.975 - - 0.975 - - - Mlig455_015624 {REF} {Length: 700} {RNA1509_39987} {RNA1310_11976} {RNA815_1768.1}
6. MligTC455_12390 239 4.98 Mlig455_033352, Mlig455_033374

Neo: -

Age: -

Region-enriched R8: 4.186/0.00002

 SLC16A14 0.971 - - - - - 0.971

Mlig455_033352 {REF} {Length: 3261} {Pfam: Major Facilitator Superfamily [PF07690.18, score=118.6]; Uncharacterised MFS-type transporter YbfB [PF06779.16, score=47.1]; Sugar (and other) transporter [PF00083.26, score=25.8]; MFS_1 like family [PF12832.9, score=20.5]; Type II CAAX prenyl endopeptidase Rce1-like [PF02517.18, score=19.9]; Vacuole effluxer Atg22 like [PF11700.10, score=19.2]} {Human: ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [RH, Score=207, Expect=4e-60]} {Mouse: ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [RH, Score=214, Expect=2e-62]} {Dmel: FBgn0023549, Mct1, Monocarboxylate transporter 1, [Score=186, Expect=1e-51]} {Celegans: WBGene00015676, mct-6, MonoCarboxylate Transporter family, [Score=257, Expect=3e-78]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=332, Expect=2e-107]} {RNA1509_37961} {RNA1310_14005} {RNA815_25187}

Mlig455_033374 {REF} {Length: 3256} {Pfam: Major Facilitator Superfamily [PF07690.18, score=121.7]; Uncharacterised MFS-type transporter YbfB [PF06779.16, score=48.2]; Sugar (and other) transporter [PF00083.26, score=28.4]; Type II CAAX prenyl endopeptidase Rce1-like [PF02517.18, score=22.2]; MFS_1 like family [PF12832.9, score=20.5]; Vacuole effluxer Atg22 like [PF11700.10, score=19.2]} {Human: ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [RH, Score=211, Expect=3e-61]} {Mouse: ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [RH, Score=217, Expect=1e-63]} {Dmel: FBgn0023549, Mct1, Monocarboxylate transporter 1, [Score=187, Expect=6e-52]} {Celegans: WBGene00015676, mct-6, MonoCarboxylate Transporter family, [Score=258, Expect=2e-78]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=334, Expect=4e-108]} {RNA1509_37961} {RNA1310_14005, RNA1509_37961} {RNA1509_37961, RNA815_25187}
7. MligTC455_23391 71 1.48 Mlig455_043319

Neo: -

Age: -

Region-enriched R4: 3.472/0.00679

 0.971 - - - - - 0.971 Mlig455_043319 {REF} {Length: 2729} {RNA1509_54267} {RNA1310_10915} {RNA815_1825.1}
8. MligTC455_21432 210 4.38 Mlig455_017954

Neo: -

Age: -

 HYOU1 0.97 - - - 0.970 - - Mlig455_017954 {REF} {Length: 4763} {TRANSSPLICED} {Pfam: Hsp70 protein [PF00012.22, score=303.8]} {Human: ENSG00000149428, HYOU1, hypoxia up-regulated 1, [RH, Score=682, Expect=0.0]; ENSG00000280682, HYOU1, hypoxia up-regulated 1, [RH, Score=682, Expect=0.0]} {Mouse: ENSMUSG00000032115, Hyou1, hypoxia up-regulated 1, [RH, Score=683, Expect=0.0]} {Dmel: FBgn0023529, CG2918, [RH, Score=640, Expect=0.0]} {Celegans: WBGene00020781, T24H7.2, [RH, Score=431, Expect=5e-136]} {Smed: dd_Smed_v6_2324_0_1, dd_Smed_v6_2324_0_1, [RH, Score=754, Expect=0.0]} {RNA1509_2039} {RNA1310_2884} {RNA815_385}
9. MligTC455_25287 78 1.62 Mlig455_016988, Mlig455_021241, Mlig455_069255

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-2.192

 FCN2 0.968 - - - - - 0.968

Mlig455_016988 {REF} {Length: 1045} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=147.6]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=141, Expect=1e-39]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=134, Expect=1e-35]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=134, Expect=8e-36]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [RH, Score=133, Expect=1e-36]} {Dmel: FBgn0030163, CG1791, [RH, Score=120, Expect=9e-32]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=105, Expect=2e-25]} {RNA1310_48119} {RNA815_52558}

Mlig455_021241 {REF} {Length: 1723} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=97.3]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=104, Expect=2e-24]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=100, Expect=4e-22]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [Score=102, Expect=8e-24]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=101, Expect=1e-22]; ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=99.0, Expect=5e-22]; ENSMUSG00000026841, Fibcd1, fibrinogen C domain containing 1, [Score=97.1, Expect=2e-21]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=97.1, Expect=3e-21]} {Dmel: FBgn0030163, CG1791, [Score=97.4, Expect=4e-22]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=88.6, Expect=1e-18]} {RNA1509_12256} {RNA1310_326} {RNA815_351.1}

Mlig455_069255 {REF} {Length: 8909} {RNA1509_33647, RNA1509_36216} {RNA1310_15325.1, RNA1509_33647, RNA1509_36216} {RNA1509_33647, RNA1509_36216, RNA815_10965}
10. MligTC455_53818 33 0.68 Mlig455_032319

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_032319 {REF} {Length: 2522} {NoTransDecoderORF} {RNA1509_55284} {RNA1310_68525} {RNA815_47119}
11. MligTC455_16176 76 1.58 Mlig455_048486

Neo: Int S/G2/M

Age: -

 GCM1 0.967 - - - - - 0.967 Mlig455_048486 {REF} {Length: 2372} {Pfam: GCM motif protein [PF03615.17, score=223.0]} {Human: ENSG00000137270, GCM1, glial cells missing homolog 1, [RH, Score=197, Expect=3e-57]; ENSG00000124827, GCM2, glial cells missing homolog 2, [RH, Score=191, Expect=2e-54]} {Mouse: ENSMUSG00000023333, Gcm1, glial cells missing homolog 1, [RH, Score=192, Expect=1e-55]; ENSMUSG00000021362, Gcm2, glial cells missing homolog 2, [RH, Score=189, Expect=1e-53]} {Dmel: FBgn0014179, gcm, glial cells missing, [RH, Score=230, Expect=2e-69]} {Smed: dd_Smed_v6_15107_0_1, dd_Smed_v6_15107_0_1, [RH, Score=186, Expect=3e-54]} {RNA1509_58813} {RNA1310_66943} {RNA815_43872}
12. MligTC455_18991 10967 228.47 Mlig455_037440, Mlig455_037464, Mlig455_037503

Neo: -

Age: logFC(26M/2M)=-0.211

Regeneration-upregulated BL: 1.902

Regeneration-enriched BL: 1.902

 CHRNA6 0.961 - - - - - 0.961

Mlig455_037440 {REF} {Length: 2692} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=70.7]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=47.1]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=117, Expect=2e-28]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=112, Expect=5e-27]; ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=108, Expect=4e-25]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=108, Expect=2e-25]} {Dmel: FBgn0028875, nAChRalpha5, nicotinic Acetylcholine Receptor alpha5, [Score=112, Expect=1e-26]} {Celegans: WBGene00000048, acr-9, AcetylCholine Receptor, [Score=110, Expect=3e-26]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=113, Expect=2e-27]} {RNA1509_24940, RNA1509_3092} {RNA1310_30196.2, RNA1509_24940} {RNA1509_24940, RNA815_25568}

Mlig455_037464 {REF} {Length: 2686} {RNA1509_3092} {RNA1310_30196.2} {RNA815_6516}

Mlig455_037503 {REF} {Length: 1172} {RNA1509_3092} {RNA1310_28554} {RNA815_6516}
13. MligTC455_29151 72 1.49 Mlig455_034331

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_034331 {REF} {Length: 6176} {RNA1509_833} {RNA1310_22564} {RNA815_16197}
14. MligTC455_02324 121 2.51 Mlig455_045874

Neo: -

Age: -

Region-enriched R7: 4.211/0.00373

 HRASLS 0.958 - - - - - 0.958 Mlig455_045874 {REF} {Length: 1080} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=47.1]} {Human: ENSG00000127252, HRASLS, HRAS like suppressor, [Score=47.8, Expect=7e-06]} {Mouse: ENSMUSG00000028003, Lrat, lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase), [RH, Score=47.4, Expect=5e-06]} {RNA1310_85008} {RNA815_46214}
15. MligTC455_02323 125 2.59 Mlig455_042840

Neo: -

Age: -

Region-enriched R7: 3.998/0.00319

 HRASLS 0.957 - - - - - 0.957 Mlig455_042840 {REF} {Length: 1042} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=47.1]} {Human: ENSG00000127252, HRASLS, HRAS like suppressor, [Score=47.8, Expect=7e-06]} {Mouse: ENSMUSG00000028003, Lrat, lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase), [RH, Score=47.8, Expect=4e-06]} {RNA1310_85008} {RNA815_46214}
16. MligTC455_46554 47 0.97 Mlig455_038253

Neo: -

Age: logFC(26M/2M)=-0.562

 0.957 - - - - - 0.957 Mlig455_038253 {REF} {Length: 1890} {Pfam: Calcium-activated potassium channel, beta subunit [PF03185.17, score=60.6]} {Smed: dd_Smed_v6_12880_0_1, dd_Smed_v6_12880_0_1, [Score=94.4, Expect=7e-24]} {RNA1310_40614} {RNA815_32173}
17. MligTC455_55434 12 0.24 Mlig455_027850

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_027850 {REF} {Length: 485} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=116.0]} {Dmel: FBgn0034583, CG10527, [Score=97.8, Expect=5e-25]} {Smed: dd_Smed_v6_87_0_2, dd_Smed_v6_87_0_2, [Score=129, Expect=6e-39]} {RNA1509_43784} {RNA1310_37041.1} {RNA815_16844.2}
18. MligTC455_35202 533 11.11 Mlig455_040988, Mlig455_056406

Neo: -

Age: -

 0.956 - - - - - 0.956

Mlig455_040988 {REF} {Length: 11337} {RNA1509_43690, RNA1509_45342, RNA1509_58158} {RNA1310_8601.1, RNA1509_43690, RNA1509_45342, RNA1509_58158} {RNA1509_43690, RNA1509_45342, RNA1509_58158, RNA815_11562.1}

Mlig455_056406 {REF} {Length: 961} {NoTransDecoderORF} {RNA1509_45342} {RNA1310_23229} {RNA815_17325}
19. MligTC455_13051 153 3.19 Mlig455_001290, Mlig455_031464

Neo: -

Age: -

 0.955 - - - - - 0.955

Mlig455_001290 {REF} {Length: 1941} {RNA1509_29766} {RNA1310_38507} {RNA815_51247}

Mlig455_031464 {REF} {Length: 1730} {RNA1509_29766} {RNA1310_38507} {RNA815_51247}
20. MligTC455_16657 842 17.53 Mlig455_042515

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.634

Region-enriched R7: 2.586/0.00000
Region-enriched R8: 2.572/0.00150

Regeneration-upregulated BL: 2.469

Regeneration-enriched BL: 2.469

 FERD3L 0.954 - - - - - 0.954 Mlig455_042515 {REF} {Length: 1703} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=59.2]} {Human: ENSG00000146618, FERD3L, Fer3 like bHLH transcription factor, [RH, Score=111, Expect=4e-29]} {Mouse: ENSMUSG00000046518, Ferd3l, Fer3 like bHLH transcription factor, [RH, Score=111, Expect=3e-29]} {Dmel: FBgn0037937, Fer3, 48 related 3, [RH, Score=119, Expect=5e-32]} {Celegans: WBGene00001957, hlh-13, Helix-loop-helix protein 13, [Score=67.8, Expect=1e-13]} {Smed: dd_Smed_v6_8096_0_1, dd_Smed_v6_8096_0_1, [RH, Score=120, Expect=2e-32]} {RNA1509_28158} {RNA1310_23170} {RNA815_15242}
21. MligTC455_17987 83 1.74 Mlig455_055688

Neo: -

Age: -

 KCNQ2 0.953 - - - - - 0.953 Mlig455_055688 {REF} {Length: 3961} {Pfam: Ion channel [PF07885.18, score=54.0]; Ligand-gated ion channel [PF00060.28, score=36.1]; Ion transport protein [PF00520.33, score=27.3]} {Human: ENSG00000075043, KCNQ2, potassium voltage-gated channel subfamily Q member 2, [Score=51.6, Expect=2e-06]; ENSG00000162975, KCNF1, potassium voltage-gated channel modifier subfamily F member 1, [Score=51.2, Expect=2e-06]; ENSG00000185760, KCNQ5, potassium voltage-gated channel subfamily Q member 5, [Score=51.2, Expect=3e-06]; ENSG00000281151, KCNQ2, potassium voltage-gated channel subfamily Q member 2, [Score=49.3, Expect=1e-05]} {Mouse: ENSMUSG00000051726, Kcnf1, potassium voltage-gated channel, subfamily F, member 1, [Score=51.6, Expect=1e-06]; ENSMUSG00000016346, Kcnq2, potassium voltage-gated channel, subfamily Q, member 2, [Score=51.2, Expect=2e-06]; ENSMUSG00000028033, Kcnq5, potassium voltage-gated channel, subfamily Q, member 5, [Score=51.2, Expect=2e-06]; ENSMUSG00000047298, Kcnv2, potassium channel, subfamily V, member 2, [Score=50.1, Expect=4e-06]} {Celegans: WBGene00003775, nmr-2, NMDA class glutamate Receptor; NMDA-type ionotropic glutamate receptor NMR-2, [Score=56.2, Expect=3e-08]} {Smed: dd_Smed_v6_19025_0_1, dd_Smed_v6_19025_0_1, [Score=46.2, Expect=3e-06]} {RNA1509_39194} {RNA1310_38701} {RNA815_27652}
22. MligTC455_20573 63 1.31 Mlig455_058491

Neo: Int S/G2/M

Age: -

 ATP6V1FNB 0.953 - - - - - 0.953 Mlig455_058491 {REF} {Length: 3487} {Pfam: FAM183A and FAM183B related [PF14886.8, score=22.5]} {Human: ENSG00000272899, ATP6V1FNB, ATP6V1F neighbor, [RH, Score=65.1, Expect=4e-12]} {Mouse: ENSMUSG00000109649, Gm45521, predicted gene 45521, [RH, Score=91.7, Expect=1e-21]} {Smed: dd_Smed_v6_3203_0_1, dd_Smed_v6_3203_0_1, [Score=132, Expect=2e-37]} {RNA1509_40833} {RNA1310_10710.1} {RNA815_4442.1}
23. MligTC455_21582 28 0.58 Mlig455_048795

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_048795 {REF} {Length: 582} {NoTransDecoderORF}
24. MligTC455_13829 52 1.08 Mlig455_021831

Neo: -

Age: -

Region-enriched R4: 4.662/0.01029

 0.951 - - - 0.951 - - Mlig455_021831 {REF} {Length: 6274} {RNA1509_29664} {RNA1310_22494, RNA1509_29664} {RNA1509_29664, RNA815_40665}
25. MligTC455_16196 54 1.12 Mlig455_040106

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_040106 {REF} {Length: 857} {NoTransDecoderORF} {RNA1509_33264} {RNA1310_118043} {RNA815_55800}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA