TomoSeq data search

Data search

Results for MligTC455_27457

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27457

459

9.56

Mlig455_011320, Mlig455_069519

Neo: -

Age: -

PTP4A2

Mlig455_011320 {REF} {Length: 814} {Pfam: Domain of unknown function (DUF4081) [PF13312.8, score=22.7]} {RNA1509_37248} {RNA1310_104355} {RNA815_20899}

Mlig455_069519 {REF} {Length: 4848} {TRANSSPLICED} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=22.1]; Protein-tyrosine phosphatase [PF00102.29, score=19.7]; Cyclin-dependent kinase inhibitor 3 (CDKN3) [PF05706.14, score=18.9]} {Human: ENSG00000184007, PTP4A2, protein tyrosine phosphatase type IVA, member 2, [RH, Score=173, Expect=1e-55]; ENSG00000112245, PTP4A1, protein tyrosine phosphatase type IVA, member 1, [RH, Score=173, Expect=2e-55]; ENSG00000275575, PTP4A3, protein tyrosine phosphatase type IVA, member 3, [RH, Score=171, Expect=2e-54]; ENSG00000184489, PTP4A3, protein tyrosine phosphatase type IVA, member 3, [RH, Score=171, Expect=2e-54]} {Mouse: ENSMUSG00000028788, Ptp4a2, protein tyrosine phosphatase 4a2, [RH, Score=173, Expect=1e-55]; ENSMUSG00000026064, Ptp4a1, protein tyrosine phosphatase 4a1, [RH, Score=173, Expect=2e-55]; ENSMUSG00000059895, Ptp4a3, protein tyrosine phosphatase 4a3, [RH, Score=173, Expect=1e-55]; ENSMUSG00000117310, Ptp4a1, protein tyrosine phosphatase 4a1, [RH, Score=173, Expect=2e-55]} {Dmel: FBgn0024734, PRL-1, PRL-1 phosphatase, [RH, Score=180, Expect=3e-58]} {Celegans: WBGene00004184, T19D2.2, Putative prenylated protein tyrosine phosphatase, [RH, Score=175, Expect=2e-56]} {Smed: dd_Smed_v6_2239_0_1, dd_Smed_v6_2239_0_1, [RH, Score=165, Expect=9e-53]} {RNA1509_3286} {RNA1310_18393.1, RNA1509_3286} {RNA1509_3286, RNA815_7379}

Cumulative graph for MligTC455_27457

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.275	3.705	0.83217	1.00000
RegionR2	0.458	3.705	0.45995	0.84713
RegionR3	0.544	3.705	0.22778	0.76899
RegionR4	0.304	3.705	0.59690	0.91060
RegionR5	0.439	3.705	0.29750	0.63169
RegionR6	0.394	3.705	0.41981	0.98717
RegionR7	-0.719	3.705	0.30409	0.93906
RegionR8	-1.695	3.705	0.08900	0.56438

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.134	3.705	0.20191	0.94242
RegenerationR2	-0.494	3.705	0.32038	0.75863
RegenerationR3	0.133	3.705	0.80804	0.98440
RegenerationR4	-0.07	3.705	0.89956	1.00000
RegenerationR5	-0.363	3.705	0.47271	0.84331
RegenerationR6	-0.204	3.705	0.71323	0.93181
RegenerationBL	0.945	3.705	0.19479	0.53076
RegenerationTP	1.303	3.705	0.11804	0.52484

Genes with expression patterns similar to MligTC455_27457

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27457	459	9.56	Mlig455_011320, Mlig455_069519	Neo: - Age: -	PTP4A2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_011320 {REF} {Length: 814} {Pfam: Domain of unknown function (DUF4081) [PF13312.8, score=22.7]} {RNA1509_37248} {RNA1310_104355} {RNA815_20899} Mlig455_069519 {REF} {Length: 4848} {TRANSSPLICED} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=22.1]; Protein-tyrosine phosphatase [PF00102.29, score=19.7]; Cyclin-dependent kinase inhibitor 3 (CDKN3) [PF05706.14, score=18.9]} {Human: ENSG00000184007, PTP4A2, protein tyrosine phosphatase type IVA, member 2, [RH, Score=173, Expect=1e-55]; ENSG00000112245, PTP4A1, protein tyrosine phosphatase type IVA, member 1, [RH, Score=173, Expect=2e-55]; ENSG00000275575, PTP4A3, protein tyrosine phosphatase type IVA, member 3, [RH, Score=171, Expect=2e-54]; ENSG00000184489, PTP4A3, protein tyrosine phosphatase type IVA, member 3, [RH, Score=171, Expect=2e-54]} {Mouse: ENSMUSG00000028788, Ptp4a2, protein tyrosine phosphatase 4a2, [RH, Score=173, Expect=1e-55]; ENSMUSG00000026064, Ptp4a1, protein tyrosine phosphatase 4a1, [RH, Score=173, Expect=2e-55]; ENSMUSG00000059895, Ptp4a3, protein tyrosine phosphatase 4a3, [RH, Score=173, Expect=1e-55]; ENSMUSG00000117310, Ptp4a1, protein tyrosine phosphatase 4a1, [RH, Score=173, Expect=2e-55]} {Dmel: FBgn0024734, PRL-1, PRL-1 phosphatase, [RH, Score=180, Expect=3e-58]} {Celegans: WBGene00004184, T19D2.2, Putative prenylated protein tyrosine phosphatase, [RH, Score=175, Expect=2e-56]} {Smed: dd_Smed_v6_2239_0_1, dd_Smed_v6_2239_0_1, [RH, Score=165, Expect=9e-53]} {RNA1509_3286} {RNA1310_18393.1, RNA1509_3286} {RNA1509_3286, RNA815_7379}
2.	MligTC455_33607	482	10.03	Mlig455_064683	Neo: Int S/G2/M Age: -	KDM1A	1.728	-	-	0.954	-	-	0.774	Mlig455_064683 {REF} {Length: 3352} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=195.6]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=57.8]; FAD dependent oxidoreductase [PF01266.26, score=30.1]; Thi4 family [PF01946.19, score=29.4]; FAD binding domain [PF00890.26, score=28.9]; FAD binding domain [PF01494.21, score=25.0]; FAD dependent oxidoreductase [PF12831.9, score=23.6]; HI0933-like protein [PF03486.16, score=21.0]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=20.5]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=20.1]} {Human: ENSG00000004487, KDM1A, lysine demethylase 1A, [Score=114, Expect=9e-26]} {Mouse: ENSMUSG00000036940, Kdm1a, lysine (K)-specific demethylase 1A, [Score=115, Expect=5e-26]} {Dmel: FBgn0260397, Su(var)3-3, Suppressor of variegation 3-3, [Score=97.8, Expect=1e-20]} {Celegans: WBGene00000137, amx-1, Amine oxidase family member 1, [Score=106, Expect=1e-23]} {Smed: dd_Smed_v6_10899_0_1, dd_Smed_v6_10899_0_1, [RH, Score=415, Expect=1e-136]} {RNA1509_26570} {RNA1310_9348} {RNA815_2019}
3.	MligTC455_47619	313	6.51	Mlig455_027277, Mlig455_027294	Neo: - Age: Down-Up-Down	QKI	0.967	-	-	0.967	-	-	-	Mlig455_027277 {REF} {Length: 2973} {Pfam: Homodimerisation region of STAR domain protein [PF16544.7, score=67.6]} {Human: ENSG00000112531, QKI, QKI, KH domain containing RNA binding, [RH, Score=252, Expect=4e-80]} {Mouse: ENSMUSG00000062078, Qk, quaking, [RH, Score=252, Expect=3e-80]} {Dmel: FBgn0264491, how, held out wings, [Score=237, Expect=5e-74]} {Celegans: WBGene00006423, asd-2, RNA-binding protein asd-2, [Score=230, Expect=6e-72]} {Smed: dd_Smed_v6_13063_0_1, dd_Smed_v6_13063_0_1, [Score=241, Expect=4e-76]} {RNA1509_39997} {RNA1310_8654.1} {RNA815_13652.1} Mlig455_027294 {REF} {Length: 350} {NoTransDecoderORF} {RNA1509_39997} {RNA1310_8654.1} {RNA815_13652.2}
4.	MligTC455_20189	745	15.51	Mlig455_065227	Neo: - Age: -	ANO2	0.962	-	-	0.962	-	-	-	Mlig455_065227 {REF} {Length: 6049} {Pfam: Calcium-activated chloride channel [PF04547.14, score=496.4]; Dimerisation domain of Ca+-activated chloride-channel, anoctamin [PF16178.7, score=104.2]} {Human: ENSG00000047617, ANO2, anoctamin 2, [RH, Score=539, Expect=7e-176]} {Mouse: ENSMUSG00000038115, Ano2, anoctamin 2, [RH, Score=533, Expect=6e-174]} {Dmel: FBgn0036235, CG6938, [RH, Score=557, Expect=0.0]} {Celegans: WBGene00010138, anoh-1, Anoctamin, [Score=209, Expect=2e-56]} {Smed: dd_Smed_v6_4761_0_1, dd_Smed_v6_4761_0_1, [Score=460, Expect=3e-148]} {RNA1509_13805} {RNA1310_2805.1, RNA1509_13805} {RNA1509_13805, RNA815_1328}
5.	MligTC455_27947	353	7.35	Mlig455_049351	Neo: - Age: Up-Down-Down	BCAT2	0.958	-	-	0.958	-	-	-	Mlig455_049351 {REF} {Length: 3773} {Pfam: Amino-transferase class IV [PF01063.21, score=94.8]} {Human: ENSG00000105552, BCAT2, branched chain amino acid transaminase 2, [Score=364, Expect=2e-123]; ENSG00000060982, BCAT1, branched chain amino acid transaminase 1, [Score=362, Expect=2e-122]} {Mouse: ENSMUSG00000030826, Bcat2, branched chain aminotransferase 2, mitochondrial, [Score=379, Expect=3e-129]; ENSMUSG00000030268, Bcat1, branched chain aminotransferase 1, cytosolic, [Score=370, Expect=4e-126]} {Dmel: FBgn0030482, CG1673, [Score=370, Expect=2e-125]} {Celegans: WBGene00001149, bcat-1, Branched-chain-amino-acid aminotransferase, cytosolic, [RH, Score=372, Expect=2e-126]} {Smed: dd_Smed_v6_3721_0_1, dd_Smed_v6_3721_0_1, [RH, Score=410, Expect=7e-142]} {RNA1509_24419, RNA1509_52594} {RNA1310_21362.1, RNA1509_52594} {RNA1509_52594, RNA815_10816}
6.	MligTC455_44777	598	12.45	Mlig455_065381	Neo: - Age: logFC(26M/2M)=0.209	SPART	0.955	-	-	0.955	-	-	-	Mlig455_065381 {REF} {Length: 2661} {TRANSSPLICED} {Pfam: Senescence-associated protein [PF06911.14, score=58.7]} {Human: ENSG00000133104, SPART, spartin, [Score=56.2, Expect=9e-08]} {Mouse: ENSMUSG00000036580, Spg20, spastic paraplegia 20, spartin (Troyer syndrome) homolog (human), [Score=100, Expect=9e-22]} {RNA1509_10450} {RNA1310_9098} {RNA815_5367}
7.	MligTC455_33606	491	10.23	Mlig455_064651	Neo: - Age: -	KDM1A	0.953	-	-	0.953	-	-	-	Mlig455_064651 {REF} {Length: 3833} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=193.0]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=58.0]; FAD dependent oxidoreductase [PF01266.26, score=29.7]; FAD binding domain [PF00890.26, score=28.8]; Thi4 family [PF01946.19, score=27.9]; FAD binding domain [PF01494.21, score=25.8]; FAD dependent oxidoreductase [PF12831.9, score=23.4]; HI0933-like protein [PF03486.16, score=21.3]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=20.0]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=19.8]} {Human: ENSG00000004487, KDM1A, lysine demethylase 1A, [Score=112, Expect=4e-25]} {Mouse: ENSMUSG00000036940, Kdm1a, lysine (K)-specific demethylase 1A, [Score=112, Expect=2e-25]} {Dmel: FBgn0260397, Su(var)3-3, Suppressor of variegation 3-3, [Score=99.8, Expect=2e-21]} {Celegans: WBGene00000137, amx-1, Amine oxidase family member 1, [Score=109, Expect=2e-24]} {Smed: dd_Smed_v6_10899_0_1, dd_Smed_v6_10899_0_1, [RH, Score=415, Expect=2e-136]} {RNA1509_26570} {RNA1310_9348, RNA1509_26570} {RNA1509_26570, RNA815_2019}
8.	MligTC455_46365	549	11.43	Mlig455_050295	Neo: - Age: Down-Up-Up Region-enriched R5: 1.396/0.00171	C22orf39	0.953	-	-	0.953	-	-	-	Mlig455_050295 {REF} {Length: 756} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF3128) [PF11326.10, score=32.3]} {Human: ENSG00000242259, C22orf39, chromosome 22 open reading frame 39, [RH, Score=62.4, Expect=1e-12]} {Mouse: ENSMUSG00000071632, 2510002D24Rik, RIKEN cDNA 2510002D24 gene, [RH, Score=71.2, Expect=2e-16]} {Dmel: FBgn0033085, CG15908, [RH, Score=84.7, Expect=4e-21]} {Smed: dd_Smed_v6_10060_0_1, dd_Smed_v6_10060_0_1, [RH, Score=86.7, Expect=2e-22]} {RNA1509_36362, RNA1509_57749} {RNA1310_41246.1, RNA1509_36362, RNA1509_57749} {RNA1509_36362, RNA1509_57749, RNA815_23362}
9.	MligTC455_47427	885	18.44	Mlig455_002248, Mlig455_002292	Neo: - Age: Down-Up-Down	CNEP1R1	0.95	-	-	0.950	-	-	-	Mlig455_002248 {REF} {Length: 2101} {TRANSSPLICED} {Pfam: Transmembrane protein 188 [PF09771.11, score=133.9]} {Human: ENSG00000205423, CNEP1R1, CTD nuclear envelope phosphatase 1 regulatory subunit 1, [RH, Score=120, Expect=1e-35]} {Mouse: ENSMUSG00000036810, Cnep1r1, CTD nuclear envelope phosphatase 1 regulatory subunit 1, [RH, Score=120, Expect=8e-36]} {Dmel: FBgn0036090, CG8009, [RH, Score=111, Expect=1e-32]} {Celegans: WBGene00011828, nepr-1, Nuclear envelope phosphatase-regulatory subunit 1 homolog, [RH, Score=79.7, Expect=5e-20]} {Smed: dd_Smed_v6_7741_0_1, dd_Smed_v6_7741_0_1, [RH, Score=98.6, Expect=1e-27]} {RNA1509_14702} {RNA1310_22488, RNA1509_14702} {RNA1509_14702, RNA815_26788} Mlig455_002292 {REF} {Length: 2287} {TRANSSPLICED} {Pfam: Transmembrane protein 188 [PF09771.11, score=133.7]} {Human: ENSG00000205423, CNEP1R1, CTD nuclear envelope phosphatase 1 regulatory subunit 1, [RH, Score=120, Expect=1e-35]} {Mouse: ENSMUSG00000036810, Cnep1r1, CTD nuclear envelope phosphatase 1 regulatory subunit 1, [RH, Score=120, Expect=8e-36]} {Dmel: FBgn0036090, CG8009, [RH, Score=110, Expect=7e-32]} {Celegans: WBGene00011828, nepr-1, Nuclear envelope phosphatase-regulatory subunit 1 homolog, [RH, Score=81.6, Expect=1e-20]} {Smed: dd_Smed_v6_7741_0_1, dd_Smed_v6_7741_0_1, [RH, Score=97.4, Expect=4e-27]} {RNA1509_14702, RNA1509_22650, RNA1509_55569} {RNA1310_22488, RNA1509_22650, RNA1509_55569} {RNA1509_22650, RNA1509_55569, RNA815_26788}

Berezikov Lab - 2020-2021 © ERIBA