M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27484

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27484 185 3.86 Mlig455_027710

Neo: -

Age: Up-Down-Up

 SVOP Mlig455_027710 {REF} {Length: 2691} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=97.9]; Major Facilitator Superfamily [PF07690.18, score=97.0]} {Human: ENSG00000166111, SVOP, SV2 related protein, [RH, Score=377, Expect=4e-123]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [RH, Score=365, Expect=1e-118]} {Dmel: FBgn0034956, CG4324, [RH, Score=308, Expect=7e-98]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=342, Expect=1e-110]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=451, Expect=2e-153]} {RNA1509_42296} {RNA1310_15876.1} {RNA815_5293}

Cumulative graph for MligTC455_27484

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.812 2.433 0.34947 0.99321
RegionR2 -0.201 2.433 0.81018 1.00000
RegionR3 -1.53 2.433 0.02715 0.28163
RegionR4 -0.037 2.433 0.97823 1.00000
RegionR5 -1.054 2.433 0.07584 0.25198
RegionR6 -0.626 2.433 0.33373 0.92168
RegionR7 -0.168 2.433 0.85625 1.00000
RegionR8 1.804 2.433 0.03996 0.39261

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.533 2.433 0.20398 0.94442
RegenerationR2 0.497 2.433 0.43524 0.83736
RegenerationR3 0.344 2.433 0.68094 0.94090
RegenerationR4 -1.003 2.433 0.24145 0.69044
RegenerationR5 0.145 2.433 0.84471 1.00000
RegenerationR6 -0.325 2.433 0.68735 0.91755
RegenerationBL 1.212 2.433 0.12117 0.41303
RegenerationTP -0.556 2.433 0.54314 0.92840


Genes with expression patterns similar to MligTC455_27484

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27484 185 3.86 Mlig455_027710

Neo: -

Age: Up-Down-Up

 SVOP 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_027710 {REF} {Length: 2691} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=97.9]; Major Facilitator Superfamily [PF07690.18, score=97.0]} {Human: ENSG00000166111, SVOP, SV2 related protein, [RH, Score=377, Expect=4e-123]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [RH, Score=365, Expect=1e-118]} {Dmel: FBgn0034956, CG4324, [RH, Score=308, Expect=7e-98]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=342, Expect=1e-110]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=451, Expect=2e-153]} {RNA1509_42296} {RNA1310_15876.1} {RNA815_5293}
2. MligTC455_34992 310 6.45 Mlig455_015774

Neo: -

Age: -

 ABHD13 0.964 - - 0.964 - - - Mlig455_015774 {REF} {Length: 2250} {TRANSSPLICED} {Pfam: Serine aminopeptidase, S33 [PF12146.10, score=45.9]; alpha/beta hydrolase fold [PF00561.22, score=42.2]; Alpha/beta hydrolase family [PF12697.9, score=32.0]; Acetyl xylan esterase (AXE1) [PF05448.14, score=23.6]; alpha/beta hydrolase fold [PF07859.15, score=19.8]} {Human: ENSG00000139826, ABHD13, abhydrolase domain containing 13, [RH, Score=223, Expect=1e-68]} {Mouse: ENSMUSG00000040396, Abhd13, abhydrolase domain containing 13, [RH, Score=239, Expect=6e-75]} {Dmel: FBgn0025109, Bem46, [RH, Score=219, Expect=2e-67]} {Celegans: WBGene00045192, aho-3, [Score=100, Expect=2e-23]} {Smed: dd_Smed_v6_6717_0_1, dd_Smed_v6_6717_0_1, [RH, Score=247, Expect=3e-78]} {RNA1509_14735} {RNA1310_20836} {RNA815_14136}
3. MligTC455_08987 16 0.34 Mlig455_069457

Neo: -

Age: -

 SLC18A2 0.953 - - - - 0.953 - Mlig455_069457 {REF} {Length: 1774} {Pfam: Major Facilitator Superfamily [PF07690.18, score=103.9]} {Human: ENSG00000165646, SLC18A2, solute carrier family 18 member A2, [Score=276, Expect=4e-86]} {Mouse: ENSMUSG00000025094, Slc18a2, solute carrier family 18 (vesicular monoamine), member 2, [Score=280, Expect=4e-88]} {Dmel: FBgn0260964, Vmat, Vesicular monoamine transporter, [Score=267, Expect=3e-82]} {Celegans: WBGene00000295, cat-1, [Score=240, Expect=2e-73]} {Smed: dd_Smed_v6_16043_0_1, dd_Smed_v6_16043_0_1, [Score=258, Expect=8e-80]}
4. MligTC455_37692 489 10.19 Mlig455_017407, Mlig455_017482, Mlig455_030910

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_017407 {REF} {Length: 520} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_58214} {RNA815_31419.2}

Mlig455_017482 {REF} {Length: 689} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_58214} {RNA815_31419.2}

Mlig455_030910 {REF} {Length: 1092} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_58214} {RNA815_31419.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA