M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27819

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27819 35 0.72 Mlig455_051367

Neo: -

Age: -

 TCTEX1D2 Mlig455_051367 {REF} {Length: 1240} {Pfam: Tctex-1 family [PF03645.15, score=52.8]} {Human: ENSG00000213123, TCTEX1D2, Tctex1 domain containing 2, [Score=63.9, Expect=8e-13]} {Mouse: ENSMUSG00000116780, Gm3417, predicted gene 3417, [Score=58.2, Expect=2e-10]; ENSMUSG00000079710, Gm3448, predicted gene 3448, [Score=57.4, Expect=4e-10]; ENSMUSG00000079707, Tcte3, t-complex-associated testis expressed 3, [Score=57.4, Expect=4e-10]} {Smed: dd_Smed_v6_12108_0_1, dd_Smed_v6_12108_0_1, [Score=62.8, Expect=2e-12]} {RNA1509_27094} {RNA1310_36424} {RNA815_17218}

Cumulative graph for MligTC455_27819

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.01 1.084 0.99961 1.00000
RegionR2 -0.963 1.084 0.88330 1.00000
RegionR3 1.352 1.084 0.32321 0.86130
RegionR4 2.371 1.084 0.19676 0.47524
RegionR5 0.933 1.084 0.43056 0.79024
RegionR6 1.725 1.084 0.25539 0.83997
RegionR7 -2.85 1.084 0.99970 1.00000
RegionR8 -2.576 1.084 0.99966 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.061 1.084 0.99989 1.00000
RegenerationR2 0.27 1.084 0.81497 0.99439
RegenerationR3 -2.684 1.084 0.04950 0.38628
RegenerationR4 -0.476 1.084 0.71117 0.95760
RegenerationR5 -1.203 1.084 0.33127 0.75235
RegenerationR6 -0.873 1.084 0.45013 0.77079
RegenerationBL 2.289 1.084 0.26154 0.61975
RegenerationTP 2.359 1.084 0.39874 0.82828


Genes with expression patterns similar to MligTC455_27819

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27819 35 0.72 Mlig455_051367

Neo: -

Age: -

 TCTEX1D2 3 - - 1.000 1.000 1.000 - Mlig455_051367 {REF} {Length: 1240} {Pfam: Tctex-1 family [PF03645.15, score=52.8]} {Human: ENSG00000213123, TCTEX1D2, Tctex1 domain containing 2, [Score=63.9, Expect=8e-13]} {Mouse: ENSMUSG00000116780, Gm3417, predicted gene 3417, [Score=58.2, Expect=2e-10]; ENSMUSG00000079710, Gm3448, predicted gene 3448, [Score=57.4, Expect=4e-10]; ENSMUSG00000079707, Tcte3, t-complex-associated testis expressed 3, [Score=57.4, Expect=4e-10]} {Smed: dd_Smed_v6_12108_0_1, dd_Smed_v6_12108_0_1, [Score=62.8, Expect=2e-12]} {RNA1509_27094} {RNA1310_36424} {RNA815_17218}
2. MligTC455_41957 50 1.04 Mlig455_045094

Neo: -

Age: -

 1.736 - - - 0.968 0.768 - Mlig455_045094 {REF} {Length: 716} {NoTransDecoderORF} {RNA1310_81641}
3. MligTC455_11677 27 0.56 Mlig455_022907

Neo: -

Age: -

 0.97 - - - 0.970 - - Mlig455_022907 {REF} {Length: 493} {NoTransDecoderORF} {RNA1509_28157} {RNA1310_62961} {RNA815_32447.1}
4. MligTC455_31795 26 0.53 Mlig455_023969

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_023969 {REF} {Length: 958} {NoTransDecoderORF} {RNA1310_99132}
5. MligTC455_48788 183 3.82 Mlig455_035100, Mlig455_053308

Neo: Irradiation

Age: Down-Up-Down

 GNAO1 0.957 - - - 0.957 - -

Mlig455_035100 {REF} {Length: 2706} {Pfam: G-protein alpha subunit [PF00503.22, score=366.7]; ADP-ribosylation factor family [PF00025.23, score=53.2]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=511, Expect=0.0]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=505, Expect=0.0]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [Score=550, Expect=0.0]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [Score=540, Expect=0.0]} {Smed: dd_Smed_v6_1656_0_2, dd_Smed_v6_1656_0_2, [Score=540, Expect=0.0]} {RNA1509_46579} {RNA1310_17579} {RNA815_37690}

Mlig455_053308 {REF} {Length: 2701} {TRANSSPLICED} {Pfam: G-protein alpha subunit [PF00503.22, score=390.5]; ADP-ribosylation factor family [PF00025.23, score=62.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=25.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=21.7]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=556, Expect=0.0]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=550, Expect=0.0]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [Score=596, Expect=0.0]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [Score=584, Expect=0.0]} {Smed: dd_Smed_v6_1656_0_2, dd_Smed_v6_1656_0_2, [Score=581, Expect=0.0]} {RNA1509_46579} {RNA1310_19561} {RNA815_37690}
6. MligTC455_36226 789 16.43 Mlig455_028917

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.621

 0.956 - - - 0.956 - - Mlig455_028917 {REF} {Length: 6194} {RNA1509_4302} {RNA1310_558} {RNA815_13710}
7. MligTC455_49199 55 1.15 Mlig455_039472

Neo: -

Age: -

 ZSWIM7 0.956 - - - 0.956 - - Mlig455_039472 {REF} {Length: 1238} {TRANSSPLICED} {Human: ENSG00000214941, ZSWIM7, zinc finger SWIM-type containing 7, [RH, Score=79.3, Expect=1e-18]} {Mouse: ENSMUSG00000014243, Zswim7, zinc finger SWIM-type containing 7, [RH, Score=74.7, Expect=6e-17]} {RNA1310_11948.1} {RNA815_29151}
8. MligTC455_07347 70 1.47 Mlig455_065785, Mlig455_065805

Neo: -

Age: -

Region-enriched R4: 6.487/0.00059

 FLVCR1, FLVCR2 0.95 - - - 0.950 - -

Mlig455_065785 {REF} {Length: 1658} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=105.8]; Sugar (and other) transporter [PF00083.26, score=28.4]} {Human: ENSG00000162769, FLVCR1, feline leukemia virus subgroup C cellular receptor 1, [RH, Score=340, Expect=4e-111]} {Mouse: ENSMUSG00000034258, Flvcr2, feline leukemia virus subgroup C cellular receptor 2, [RH, Score=359, Expect=1e-118]} {Dmel: FBgn0033196, CG1358, [RH, Score=366, Expect=3e-122]} {Celegans: WBGene00015632, C09D4.1, Uncharacterized MFS-type transporter C09D4.1, [RH, Score=372, Expect=1e-123]} {Smed: dd_Smed_v6_7578_0_1, dd_Smed_v6_7578_0_1, [RH, Score=361, Expect=1e-120]} {RNA1310_13875} {RNA815_15816}

Mlig455_065805 {REF} {Length: 1618} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=103.3]; Sugar (and other) transporter [PF00083.26, score=30.5]} {Human: ENSG00000119686, FLVCR2, feline leukemia virus subgroup C cellular receptor family member 2, [Score=317, Expect=2e-102]; ENSG00000162769, FLVCR1, feline leukemia virus subgroup C cellular receptor 1, [Score=315, Expect=2e-101]} {Mouse: ENSMUSG00000034258, Flvcr2, feline leukemia virus subgroup C cellular receptor 2, [Score=328, Expect=9e-107]} {Dmel: FBgn0033196, CG1358, [Score=331, Expect=8e-109]} {Celegans: WBGene00015632, C09D4.1, Uncharacterized MFS-type transporter C09D4.1, [Score=342, Expect=2e-113]} {Smed: dd_Smed_v6_7578_0_1, dd_Smed_v6_7578_0_1, [Score=330, Expect=9e-109]} {RNA1310_13875} {RNA815_15816}
9. MligTC455_30197 138 2.88 Mlig455_038526

Neo: -

Age: -

 CBWD2 0.95 - - - 0.950 - - Mlig455_038526 {REF} {Length: 4154} {Pfam: CobW/HypB/UreG, nucleotide-binding domain [PF02492.21, score=158.2]; DALR anticodon binding domain [PF05746.17, score=32.1]; Cobalamin synthesis protein cobW C-terminal domain [PF07683.16, score=30.8]} {Human: ENSG00000136682, CBWD2, COBW domain containing 2, [RH, Score=241, Expect=6e-71]; ENSG00000172785, CBWD1, COBW domain containing 1, [RH, Score=240, Expect=1e-70]; ENSG00000196873, CBWD3, COBW domain containing 3, [RH, Score=235, Expect=8e-69]; ENSG00000147996, CBWD5, COBW domain containing 5, [RH, Score=233, Expect=3e-68]; ENSG00000215126, CBWD6, COBW domain containing 6, [RH, Score=230, Expect=5e-67]} {Mouse: ENSMUSG00000024878, Cbwd1, COBW domain containing 1, [RH, Score=246, Expect=3e-73]} {Smed: dd_Smed_v6_9040_0_1, dd_Smed_v6_9040_0_1, [RH, Score=207, Expect=2e-61]} {RNA1509_36947} {RNA1310_5600.1} {RNA815_2267.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA