M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27827

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27827 606 12.63 Mlig455_014176

Neo: Germline

Age: -

Region-enriched R5: 2.176/0.00074

 HSPA8 Mlig455_014176 {REF} {Length: 2822} {Pfam: Hsp70 protein [PF00012.22, score=870.3]; MreB/Mbl protein [PF06723.15, score=63.1]; Cell division protein FtsA [PF14450.8, score=21.0]} {Human: ENSG00000109971, HSPA8, heat shock protein family A (Hsp70) member 8, [RH, Score=1144, Expect=0.0]} {Mouse: ENSMUSG00000015656, Hspa8, heat shock protein 8, [RH, Score=1144, Expect=0.0]; ENSMUSG00000007033, Hspa1l, heat shock protein 1-like, [RH, Score=1090, Expect=0.0]} {Dmel: FBgn0266599, Hsc70-4, Heat shock protein cognate 4, [RH, Score=1095, Expect=0.0]} {Celegans: WBGene00002005, hsp-1, Heat shock 70 kDa protein A, [RH, Score=1078, Expect=0.0]} {Smed: dd_Smed_v6_15_0_1, dd_Smed_v6_15_0_1, [RH, Score=1159, Expect=0.0]} {RNA1509_172, RNA1509_21282} {RNA1310_22589, RNA1509_21282} {RNA1509_21282, RNA815_2255}

Cumulative graph for MligTC455_27827

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.175 4.038 0.42642 1.00000
RegionR2 0.296 4.038 0.71863 1.00000
RegionR3 -0.052 4.038 0.94649 1.00000
RegionR4 1.335 4.038 0.04268 0.17311
RegionR5 2.176 4.038 0.00004 0.00074
RegionR6 0.583 4.038 0.35345 0.93773
RegionR7 -1.217 4.038 0.17895 0.77483
RegionR8 -1.946 4.038 0.09229 0.57395

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.499 4.038 0.79921 1.00000
RegenerationR2 1.595 4.038 0.02983 0.28416
RegenerationR3 1.718 4.038 0.03344 0.32519
RegenerationR4 0.042 4.038 0.94653 1.00000
RegenerationR5 0.114 4.038 0.86117 1.00000
RegenerationR6 1.067 4.038 0.15859 0.48642
RegenerationBL 1.329 4.038 0.13561 0.43859
RegenerationTP 2.642 4.038 0.00541 0.12341


Genes with expression patterns similar to MligTC455_27827

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27827 606 12.63 Mlig455_014176

Neo: Germline

Age: -

Region-enriched R5: 2.176/0.00074

 HSPA8 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_014176 {REF} {Length: 2822} {Pfam: Hsp70 protein [PF00012.22, score=870.3]; MreB/Mbl protein [PF06723.15, score=63.1]; Cell division protein FtsA [PF14450.8, score=21.0]} {Human: ENSG00000109971, HSPA8, heat shock protein family A (Hsp70) member 8, [RH, Score=1144, Expect=0.0]} {Mouse: ENSMUSG00000015656, Hspa8, heat shock protein 8, [RH, Score=1144, Expect=0.0]; ENSMUSG00000007033, Hspa1l, heat shock protein 1-like, [RH, Score=1090, Expect=0.0]} {Dmel: FBgn0266599, Hsc70-4, Heat shock protein cognate 4, [RH, Score=1095, Expect=0.0]} {Celegans: WBGene00002005, hsp-1, Heat shock 70 kDa protein A, [RH, Score=1078, Expect=0.0]} {Smed: dd_Smed_v6_15_0_1, dd_Smed_v6_15_0_1, [RH, Score=1159, Expect=0.0]} {RNA1509_172, RNA1509_21282} {RNA1310_22589, RNA1509_21282} {RNA1509_21282, RNA815_2255}
2. MligTC455_27824 2030 42.29 Mlig455_003122

Neo: Germline

Age: logFC(26M/2M)=0.254

Region-enriched R5: 1.424/0.00006
Region-enriched R4: 1.221/0.01645

 HSPA8 3.681 0.882 0.912 - - 0.925 0.962 Mlig455_003122 {REF} {Length: 2862} {Pfam: Hsp70 protein [PF00012.22, score=870.1]; MreB/Mbl protein [PF06723.15, score=62.2]; Cell division protein FtsA [PF14450.8, score=20.7]; FGGY family of carbohydrate kinases, C-terminal domain [PF02782.18, score=19.0]} {Human: ENSG00000109971, HSPA8, heat shock protein family A (Hsp70) member 8, [RH, Score=1144, Expect=0.0]} {Mouse: ENSMUSG00000015656, Hspa8, heat shock protein 8, [RH, Score=1144, Expect=0.0]; ENSMUSG00000007033, Hspa1l, heat shock protein 1-like, [RH, Score=1090, Expect=0.0]} {Dmel: FBgn0266599, Hsc70-4, Heat shock protein cognate 4, [RH, Score=1095, Expect=0.0]} {Celegans: WBGene00002005, hsp-1, Heat shock 70 kDa protein A, [RH, Score=1077, Expect=0.0]} {Smed: dd_Smed_v6_15_0_1, dd_Smed_v6_15_0_1, [RH, Score=1159, Expect=0.0]} {RNA1509_29431, RNA1509_7634, RNA1509_857} {RNA1310_22589, RNA1509_7634, RNA1509_857} {RNA1509_7634, RNA1509_857, RNA815_2255}
3. MligTC455_22871 6897 143.69 Mlig455_016354

Neo: Germline

Age: Down-Up-Up, logFC(26M/2M)=0.390

Region-enriched R5: 3.201/0.00000

 LSM14A 2.501 - 0.716 - - 0.833 0.952 Mlig455_016354 {REF} {Length: 3102} {Pfam: Scd6-like Sm domain [PF12701.9, score=92.0]; Ataxin 2 SM domain [PF14438.8, score=27.6]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=22.7]} {Human: ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=121, Expect=5e-29]; ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=121, Expect=5e-29]; ENSG00000149657, LSM14B, LSM family member 14B, [Score=115, Expect=7e-28]} {Mouse: ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [Score=119, Expect=2e-28]} {Dmel: FBgn0041775, tral, trailer hitch, [RH, Score=103, Expect=9e-23]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [Score=112, Expect=5e-27]} {Smed: dd_Smed_v6_1125_0_1, dd_Smed_v6_1125_0_1, [Score=117, Expect=4e-28]} {RNA1509_1224, RNA1509_18892, RNA1509_244, RNA1509_24782, RNA1509_40925, RNA1509_55470, RNA1509_6395} {RNA1310_6619.1, RNA1509_1224, RNA1509_18892, RNA1509_244, RNA1509_24782, RNA1509_40925, RNA1509_55470, RNA1509_6395} {RNA1509_1224, RNA1509_18892, RNA1509_244, RNA1509_24782, RNA1509_40925, RNA1509_55470, RNA1509_6395, RNA815_18.1}
4. MligTC455_34720 1032 21.5 Mlig455_045717

Neo: Irradiation

Age: logFC(26M/2M)=0.320

Region-enriched R5: 3.503/0.00000

 CDC25C 2.385 - - - 0.708 0.715 0.962 Mlig455_045717 {REF} {Length: 2953} {Pfam: Rhodanese-like domain [PF00581.22, score=50.9]} {Human: ENSG00000158402, CDC25C, cell division cycle 25C, [RH, Score=163, Expect=2e-44]; ENSG00000101224, CDC25B, cell division cycle 25B, [RH, Score=160, Expect=7e-43]} {Mouse: ENSMUSG00000027330, Cdc25b, cell division cycle 25B, [RH, Score=164, Expect=5e-44]} {Dmel: FBgn0003525, stg, string, [RH, Score=187, Expect=2e-53]} {Celegans: WBGene00000387, cdc-25.2, M-phase inducer phosphatase cdc-25.2, [RH, Score=118, Expect=2e-28]} {Smed: dd_Smed_v6_7858_0_2, dd_Smed_v6_7858_0_2, [RH, Score=125, Expect=3e-31]} {RNA1509_12387} {RNA1310_18195, RNA1509_12387} {RNA1509_12387, RNA815_7206}
5. MligTC455_32465 720 15 Mlig455_063095

Neo: Irradiation

Age: Down-Up-Up

Region-enriched R5: 3.856/0.00000

 1.754 - - - - 0.785 0.969 Mlig455_063095 {REF} {Length: 1013} {Pfam: Nucleoplasmin/nucleophosmin domain [PF03066.17, score=22.7]} {RNA1509_20742, RNA1509_57793} {RNA1310_56199.1, RNA1509_20742} {RNA1509_20742, RNA815_13319}
6. MligTC455_22896 3589 74.78 Mlig455_000553, Mlig455_030351

Neo: Irradiation

Age: -

Region-enriched R5: 3.983/0.00000

 1.687 0.732 - - - - 0.955

Mlig455_000553 {REF} {Length: 1002} {RNA1509_5425, RNA1509_54392} {RNA1310_38857.1, RNA1509_54392} {RNA1509_54392, RNA815_18621}

Mlig455_030351 {REF} {Length: 1356} {RNA1509_15543, RNA1509_39851, RNA1509_5425} {RNA1310_38857.1, RNA1509_15543, RNA1509_39851} {RNA1509_15543, RNA1509_39851, RNA815_18621}
7. MligTC455_23911 1545 32.18 Mlig455_061827

Neo: Irradiation

Age: -

Region-enriched R5: 3.994/0.00000
Region-enriched R6: 2.213/0.03207

 1.667 0.713 - - - - 0.954 Mlig455_061827 {REF} {Length: 1769} {RNA1509_11050, RNA1509_13832} {RNA1310_17784, RNA1509_11050, RNA1509_13832} {RNA1509_11050, RNA1509_13832, RNA815_6691}
8. MligTC455_50522 3172 66.09 Mlig455_032207, Mlig455_054208

Neo: Irradiation

Age: logFC(26M/2M)=0.329

Region-specific R5: 2.469

Region-enriched R5: 2.159/0.00000

 PHTF2 0.968 - - - - - 0.968

Mlig455_032207 {REF} {Length: 5712} {TRANSSPLICED} {Pfam: Male germ-cell putative homeodomain transcription factor [PF12129.10, score=154.2]} {Human: ENSG00000006576, PHTF2, putative homeodomain transcription factor 2, [RH, Score=291, Expect=5e-84]} {Mouse: ENSMUSG00000039987, Phtf2, putative homeodomain transcription factor 2, [RH, Score=293, Expect=9e-85]} {Dmel: FBgn0028579, phtf, [RH, Score=270, Expect=9e-76]} {Smed: dd_Smed_v6_8465_0_1, dd_Smed_v6_8465_0_1, [RH, Score=413, Expect=8e-125]} {RNA1509_5181} {RNA1310_6500} {RNA815_631.1}

Mlig455_054208 {REF} {Length: 5495} {TRANSSPLICED} {Pfam: Male germ-cell putative homeodomain transcription factor [PF12129.10, score=154.2]} {Human: ENSG00000006576, PHTF2, putative homeodomain transcription factor 2, [RH, Score=291, Expect=5e-84]} {Mouse: ENSMUSG00000039987, Phtf2, putative homeodomain transcription factor 2, [RH, Score=293, Expect=5e-85]} {Dmel: FBgn0028579, phtf, [RH, Score=273, Expect=8e-77]} {Smed: dd_Smed_v6_8465_0_1, dd_Smed_v6_8465_0_1, [RH, Score=414, Expect=2e-125]} {RNA1509_1927} {RNA1310_3331.1, RNA1509_1927} {RNA1509_1927, RNA815_5351}
9. MligTC455_50523 1586 33.05 Mlig455_060757

Neo: Irradiation

Age: logFC(26M/2M)=0.400

Region-specific R5: 2.475

Region-enriched R5: 2.132/0.00000

 PHTF2 0.968 - - - - - 0.968 Mlig455_060757 {REF} {Length: 5816} {TRANSSPLICED} {Pfam: Male germ-cell putative homeodomain transcription factor [PF12129.10, score=154.1]} {Human: ENSG00000006576, PHTF2, putative homeodomain transcription factor 2, [RH, Score=292, Expect=4e-84]} {Mouse: ENSMUSG00000039987, Phtf2, putative homeodomain transcription factor 2, [RH, Score=295, Expect=3e-85]} {Dmel: FBgn0028579, phtf, [RH, Score=271, Expect=7e-76]} {Smed: dd_Smed_v6_8465_0_1, dd_Smed_v6_8465_0_1, [RH, Score=415, Expect=3e-125]} {RNA1509_5181} {RNA1310_6500} {RNA815_631.1}
10. MligTC455_32466 243 5.07 Mlig455_063120

Neo: Irradiation

Age: -

 0.956 - - - - - 0.956 Mlig455_063120 {REF} {Length: 1301} {Pfam: Nucleoplasmin/nucleophosmin domain [PF03066.17, score=44.1]} {RNA1509_57793} {RNA1310_29505} {RNA815_13319}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA