Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
---|---|---|---|---|---|---|
MligTC455_27883 | 423 | 8.82 | Mlig455_001736, Mlig455_007699, Mlig455_038519, Mlig455_052230 | Neo: - Age: - |
PRKAA2, RTL1 | Mlig455_001736 {REF} {Length: 2759} {Pfam: Integrase core domain [PF00665.28, score=50.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=34.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.3]; Integrase core domain [PF13683.8, score=23.7]; Aspartyl protease [PF13650.8, score=20.1]; gag-polyprotein putative aspartyl protease [PF13975.8, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=68.6, Expect=3e-11]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=94.7, Expect=5e-20]} {RNA1509_44038} {RNA1310_30980} {RNA815_23682} Mlig455_007699 {REF} {Length: 1955} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=61.1]; Integrase core domain [PF00665.28, score=49.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=27.0]; Integrase core domain [PF13683.8, score=23.5]; Aspartyl protease [PF13650.8, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=72.0, Expect=2e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=159, Expect=9e-41]} {RNA1509_44038} {RNA1310_49318} {RNA815_52853} Mlig455_038519 {REF} {Length: 3574} {Pfam: Protein kinase domain [PF00069.27, score=262.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=153.1]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=43.0]; Kinase-like [PF14531.8, score=23.9]; Phosphotransferase enzyme family [PF01636.25, score=18.9]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [Score=500, Expect=2e-171]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [Score=493, Expect=9e-169]; ENSMUSG00000050697, Prkaa1, protein kinase, AMP-activated, alpha 1 catalytic subunit, [Score=472, Expect=8e-161]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [Score=536, Expect=0.0]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [Score=506, Expect=4e-174]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [Score=544, Expect=0.0]} {RNA1509_15569} {RNA1310_12572} {RNA815_3809} Mlig455_052230 {REF} {Length: 7443} {Pfam: Protein kinase domain [PF00069.27, score=260.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=150.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.4]; Integrase zinc binding domain [PF17921.3, score=53.3]; Integrase core domain [PF00665.28, score=48.9]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=40.6]; Zinc knuckle [PF00098.25, score=23.2]; Integrase core domain [PF13683.8, score=22.7]; Kinase-like [PF14531.8, score=21.3]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [Score=416, Expect=4e-129]; ENSG00000132356, PRKAA1, protein kinase AMP-activated catalytic subunit alpha 1, [Score=404, Expect=1e-124]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [Score=419, Expect=4e-130]; ENSMUSG00000050697, Prkaa1, protein kinase, AMP-activated, alpha 1 catalytic subunit, [Score=402, Expect=2e-124]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [Score=431, Expect=3e-134]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [Score=425, Expect=2e-132]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [Score=446, Expect=3e-140]} {RNA1509_44038} {RNA1310_12572} {RNA815_3809} |
Region | logFC | logCPM | Pvalue | FDR | Specificity |
---|---|---|---|---|---|
RegionR1 | -1.535 | 3.451 | 0.31847 | 0.96821 | |
RegionR2 | 1.87 | 3.451 | 0.00557 | 0.06908 | |
RegionR3 | -0.464 | 3.451 | 0.44883 | 0.96099 | |
RegionR4 | -1.097 | 3.451 | 0.08024 | 0.26547 | |
RegionR5 | 0.356 | 3.451 | 0.47709 | 0.84044 | |
RegionR6 | 0.214 | 3.451 | 0.71023 | 1.00000 | |
RegionR7 | 0.389 | 3.451 | 0.60635 | 1.00000 | |
RegionR8 | 0.267 | 3.451 | 0.77924 | 1.00000 |
Region | logFC | logCPM | PValue | FDR | Specificity |
---|---|---|---|---|---|
RegenerationR1 | 1.705 | 3.451 | 0.40955 | 1.00000 | |
RegenerationR2 | 1.246 | 3.451 | 0.01268 | 0.18342 | |
RegenerationR3 | 2.168 | 3.451 | 0.00091 | 0.04688 | |
RegenerationR4 | 1.574 | 3.451 | 0.01155 | 0.16407 | |
RegenerationR5 | 1.517 | 3.451 | 0.00572 | 0.13896 | |
RegenerationR6 | 1.412 | 3.451 | 0.02945 | 0.21421 | |
RegenerationBL | 0.565 | 3.451 | 0.46428 | 0.83103 | |
RegenerationTP | 1.825 | 3.451 | 0.01019 | 0.17152 |
Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1. | MligTC455_27883 | 423 | 8.82 | Mlig455_001736, Mlig455_007699, Mlig455_038519, Mlig455_052230 | Neo: - Age: - |
PRKAA2, RTL1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_001736 {REF} {Length: 2759} {Pfam: Integrase core domain [PF00665.28, score=50.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=34.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.3]; Integrase core domain [PF13683.8, score=23.7]; Aspartyl protease [PF13650.8, score=20.1]; gag-polyprotein putative aspartyl protease [PF13975.8, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=68.6, Expect=3e-11]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=94.7, Expect=5e-20]} {RNA1509_44038} {RNA1310_30980} {RNA815_23682} Mlig455_007699 {REF} {Length: 1955} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=61.1]; Integrase core domain [PF00665.28, score=49.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=27.0]; Integrase core domain [PF13683.8, score=23.5]; Aspartyl protease [PF13650.8, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=72.0, Expect=2e-12]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=159, Expect=9e-41]} {RNA1509_44038} {RNA1310_49318} {RNA815_52853} Mlig455_038519 {REF} {Length: 3574} {Pfam: Protein kinase domain [PF00069.27, score=262.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=153.1]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=43.0]; Kinase-like [PF14531.8, score=23.9]; Phosphotransferase enzyme family [PF01636.25, score=18.9]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [Score=500, Expect=2e-171]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [Score=493, Expect=9e-169]; ENSMUSG00000050697, Prkaa1, protein kinase, AMP-activated, alpha 1 catalytic subunit, [Score=472, Expect=8e-161]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [Score=536, Expect=0.0]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [Score=506, Expect=4e-174]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [Score=544, Expect=0.0]} {RNA1509_15569} {RNA1310_12572} {RNA815_3809} Mlig455_052230 {REF} {Length: 7443} {Pfam: Protein kinase domain [PF00069.27, score=260.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=150.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.4]; Integrase zinc binding domain [PF17921.3, score=53.3]; Integrase core domain [PF00665.28, score=48.9]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=40.6]; Zinc knuckle [PF00098.25, score=23.2]; Integrase core domain [PF13683.8, score=22.7]; Kinase-like [PF14531.8, score=21.3]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [Score=416, Expect=4e-129]; ENSG00000132356, PRKAA1, protein kinase AMP-activated catalytic subunit alpha 1, [Score=404, Expect=1e-124]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [Score=419, Expect=4e-130]; ENSMUSG00000050697, Prkaa1, protein kinase, AMP-activated, alpha 1 catalytic subunit, [Score=402, Expect=2e-124]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [Score=431, Expect=3e-134]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [Score=425, Expect=2e-132]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [Score=446, Expect=3e-140]} {RNA1509_44038} {RNA1310_12572} {RNA815_3809} |
2. | MligTC455_26352 | 227 | 4.72 | Mlig455_051215 | Neo: - Age: - |
1.746 | - | - | 0.958 | - | - | 0.788 | Mlig455_051215 {REF} {Length: 1112} {RNA1509_40810} {RNA1310_37375} {RNA815_16686.1} | |
3. | MligTC455_26353 | 242 | 5.04 | Mlig455_067550 | Neo: - Age: Down-Up-Up |
1.729 | - | - | 0.957 | - | - | 0.772 | Mlig455_067550 {REF} {Length: 1873} {RNA1509_40810} {RNA1310_31439.2} {RNA815_17565} | |
4. | MligTC455_33244 | 553 | 11.51 | Mlig455_051395 | Neo: - Age: - |
ATMIN | 1.708 | - | - | 0.961 | - | - | 0.747 | Mlig455_051395 {REF} {Length: 3989} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=27.0]; C2H2-type zinc finger [PF13894.8, score=21.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=20.9]} {Human: ENSG00000166454, ATMIN, ATM interactor, [RH, Score=75.5, Expect=8e-14]} {Mouse: ENSMUSG00000047388, Atmin, ATM interactor, [RH, Score=77.4, Expect=2e-14]} {Celegans: WBGene00016427, C34H4.5, [Score=48.1, Expect=9e-06]} {Smed: dd_Smed_v6_7949_0_1, dd_Smed_v6_7949_0_1, [RH, Score=77.8, Expect=2e-15]} {RNA1509_15608, RNA1509_36170, RNA1509_37178} {RNA1310_15728.1, RNA1509_15608, RNA1509_36170, RNA1509_37178} {RNA1509_15608, RNA1509_36170, RNA1509_37178, RNA815_11525.1} |
5. | MligTC455_33863 | 1988 | 41.42 | Mlig455_025793, Mlig455_064361 | Neo: - Age: - |
BTRC | 0.965 | - | - | 0.965 | - | - | - | Mlig455_025793 {REF} {Length: 5618} {Pfam: WD domain, G-beta repeat [PF00400.34, score=130.3]; D domain of beta-TrCP [PF12125.10, score=62.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=38.2]; F-box-like [PF12937.9, score=37.5]; Nucleoporin Nup120/160 [PF11715.10, score=26.5]; WD40-like domain [PF17005.7, score=22.7]} {Human: ENSG00000166167, BTRC, beta-transducin repeat containing E3 ubiquitin protein ligase, [RH, Score=735, Expect=0.0]; ENSG00000072803, FBXW11, F-box and WD repeat domain containing 11, [RH, Score=714, Expect=0.0]} {Mouse: ENSMUSG00000025217, Btrc, beta-transducin repeat containing protein, [RH, Score=733, Expect=0.0]; ENSMUSG00000020271, Fbxw11, F-box and WD-40 domain protein 11, [RH, Score=716, Expect=0.0]} {Dmel: FBgn0283468, slmb, supernumerary limbs, [RH, Score=742, Expect=0.0]} {Celegans: WBGene00003009, lin-23, F-box/WD repeat-containing protein lin-23, [RH, Score=632, Expect=0.0]} {Smed: dd_Smed_v6_3757_0_1, dd_Smed_v6_3757_0_1, [RH, Score=604, Expect=0.0]} {RNA1509_11648, RNA1509_26322, RNA1509_3057, RNA1509_42851, RNA1509_48589} {RNA1310_10361.1, RNA1509_11648, RNA1509_26322, RNA1509_42851, RNA1509_48589} {RNA1509_11648, RNA1509_26322, RNA1509_42851, RNA1509_48589, RNA815_3571} Mlig455_064361 {REF} {Length: 5860} {Pfam: WD domain, G-beta repeat [PF00400.34, score=130.3]; D domain of beta-TrCP [PF12125.10, score=62.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=38.2]; F-box-like [PF12937.9, score=37.5]; Nucleoporin Nup120/160 [PF11715.10, score=26.5]; WD40-like domain [PF17005.7, score=22.7]} {Human: ENSG00000166167, BTRC, beta-transducin repeat containing E3 ubiquitin protein ligase, [RH, Score=735, Expect=0.0]; ENSG00000072803, FBXW11, F-box and WD repeat domain containing 11, [RH, Score=715, Expect=0.0]} {Mouse: ENSMUSG00000025217, Btrc, beta-transducin repeat containing protein, [RH, Score=734, Expect=0.0]; ENSMUSG00000020271, Fbxw11, F-box and WD-40 domain protein 11, [RH, Score=717, Expect=0.0]} {Dmel: FBgn0283468, slmb, supernumerary limbs, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003009, lin-23, F-box/WD repeat-containing protein lin-23, [RH, Score=632, Expect=0.0]} {Smed: dd_Smed_v6_3757_0_1, dd_Smed_v6_3757_0_1, [RH, Score=604, Expect=0.0]} {RNA1509_14454, RNA1509_3057, RNA1509_32249} {RNA1310_10361.1, RNA1509_14454, RNA1509_3057, RNA1509_32249} {RNA1509_14454, RNA1509_3057, RNA1509_32249, RNA815_3571} |
6. | MligTC455_08808 | 98 | 2.04 | Mlig455_029074 | Neo: - Age: - Region-enriched R2: 8.479/0.00000 |
0.963 | - | - | - | - | 0.963 | - | Mlig455_029074 {REF} {Length: 722} {RNA1310_65090} {RNA815_34420} | |
7. | MligTC455_33864 | 926 | 19.29 | Mlig455_064384 | Neo: - Age: - |
0.959 | - | - | 0.959 | - | - | - | Mlig455_064384 {REF} {Length: 1471} {NoTransDecoderORF} {RNA1509_32249} {RNA1310_11694.1} {RNA815_10459} | |
8. | MligTC455_49599 | 270 | 5.62 | Mlig455_022405 | Neo: - Age: - |
0.959 | - | - | 0.959 | - | - | - | Mlig455_022405 {REF} {Length: 3874} {RNA1509_23159} {RNA1310_28295.1} {RNA815_42375} | |
9. | MligTC455_31855 | 34 | 0.71 | Mlig455_022338 | Neo: - Age: - |
WSCD2 | 0.957 | - | - | - | - | 0.957 | - | Mlig455_022338 {REF} {Length: 869} {Pfam: WSC domain [PF01822.21, score=63.6]; PAN domain [PF00024.28, score=20.6]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=50.1, Expect=9e-07]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=52.4, Expect=1e-07]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=62.8, Expect=2e-11]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=48.5, Expect=1e-06]} {RNA1310_77112} {RNA815_45431} |
10. | MligTC455_50739 | 250 | 5.21 | Mlig455_065687 | Neo: - Age: logFC(26M/2M)=-0.618 Region-enriched R2: 2.479/0.00468 |
0.957 | - | - | 0.957 | - | - | - | Mlig455_065687 {REF} {Length: 2063} {RNA1509_47916, RNA1509_50080} {RNA1310_26797, RNA1509_47916, RNA1509_50080} {RNA1509_47916, RNA1509_50080, RNA815_45485} | |
11. | MligTC455_33427 | 25 | 0.52 | Mlig455_052278, Mlig455_052369 | Neo: - Age: - |
0.954 | - | - | - | - | 0.954 | - | Mlig455_052278 {REF} {Length: 959} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [Score=59.7, Expect=2e-10]} {RNA1509_13203} {RNA1310_267.1} {RNA815_381.1} Mlig455_052369 {REF} {Length: 959} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [Score=59.7, Expect=2e-10]} {RNA1509_13203} {RNA1310_267.1} {RNA815_381.1} |
|
12. | MligTC455_35897 | 305 | 6.36 | Mlig455_045327 | Neo: - Age: Up-Down-Up |
PDE8B | 0.954 | - | - | 0.954 | - | - | - | Mlig455_045327 {REF} {Length: 3142} {Pfam: 3'5'-cyclic nucleotide phosphodiesterase [PF00233.21, score=279.0]; PAS fold [PF00989.27, score=29.1]; PAS domain [PF13426.9, score=23.5]; PAS fold [PF08448.12, score=20.7]} {Human: ENSG00000113231, PDE8B, phosphodiesterase 8B, [Score=581, Expect=0.0]; ENSG00000073417, PDE8A, phosphodiesterase 8A, [Score=580, Expect=0.0]; ENSG00000284762, AC022414.1, phosphodiesterase 8B, [Score=579, Expect=0.0]} {Mouse: ENSMUSG00000021684, Pde8b, phosphodiesterase 8B, [Score=583, Expect=0.0]; ENSMUSG00000025584, Pde8a, phosphodiesterase 8A, [Score=554, Expect=0.0]} {Dmel: FBgn0266377, Pde8, Phosphodiesterase 8, [Score=355, Expect=1e-109]} {Celegans: WBGene00022389, pde-6, Probable 3',5'-cyclic phosphodiesterase pde-6, [Score=294, Expect=3e-90]} {Smed: dd_Smed_v6_10593_0_2, dd_Smed_v6_10593_0_2, [Score=430, Expect=5e-138]} {RNA1509_30321} {RNA1310_4980.1, RNA1509_30321} {RNA1509_30321, RNA815_12034} |
13. | MligTC455_53258 | 252 | 5.24 | Mlig455_059518 | Neo: - Age: - Regeneration-downregulated R2: -2.256 Regeneration-depleted R2: -2.256 |
BSG | 0.951 | - | - | 0.951 | - | - | - | Mlig455_059518 {REF} {Length: 2606} {Pfam: Immunoglobulin domain [PF13927.8, score=33.2]; Immunoglobulin I-set domain [PF07679.18, score=28.6]; Immunoglobulin domain [PF13895.8, score=24.1]; Immunoglobulin domain [PF00047.27, score=22.4]} {Human: ENSG00000172270, BSG, basigin (Ok blood group), [Score=50.1, Expect=2e-06]} {Mouse: ENSMUSG00000023175, Bsg, basigin, [Score=56.2, Expect=2e-08]} {RNA1509_32620, RNA1509_39595, RNA1509_51383} {RNA1310_13060.2, RNA1509_39595, RNA1509_51383} {RNA1509_39595, RNA1509_51383, RNA815_13381} |