TomoSeq data search

Data search

Results for MligTC455_28190

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28190

2223

46.31

Mlig455_020497, Mlig455_041029, Mlig455_060466

Neo: -

Age: -

PIF1

Mlig455_020497 {REF} {Length: 15636} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_10996, RNA1509_46} {RNA1310_143.1, RNA1509_10996} {RNA1509_10996, RNA815_104.1}

Mlig455_041029 {REF} {Length: 14626} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_46, RNA1509_51272} {RNA1310_143.1, RNA1509_51272} {RNA1509_51272, RNA815_104.1}

Mlig455_060466 {REF} {Length: 816} {TRANSSPLICED} {RNA1509_51272} {RNA1310_363} {RNA815_104.1}

Cumulative graph for MligTC455_28190

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.146	5.613	0.88430	1.00000
RegionR2	0.14	5.613	0.78919	1.00000
RegionR3	-0.481	5.613	0.29653	0.83829
RegionR4	0.305	5.613	0.56792	0.88648
RegionR5	-0.562	5.613	0.22047	0.52231
RegionR6	-0.527	5.613	0.26949	0.85819
RegionR7	-0.076	5.613	0.88797	1.00000
RegionR8	1.056	5.613	0.06015	0.47837

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.251	5.613	0.25541	0.96756
RegenerationR2	0.666	5.613	0.21617	0.66327
RegenerationR3	0.756	5.613	0.17836	0.61385
RegenerationR4	0.263	5.613	0.64564	0.93082
RegenerationR5	0.815	5.613	0.14749	0.56436
RegenerationR6	0.933	5.613	0.10746	0.40565
RegenerationBL	1.17	5.613	0.02152	0.15936
RegenerationTP	-0.637	5.613	0.29103	0.73625

Genes with expression patterns similar to MligTC455_28190

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28190	2223	46.31	Mlig455_020497, Mlig455_041029, Mlig455_060466	Neo: - Age: -	PIF1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_020497 {REF} {Length: 15636} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_10996, RNA1509_46} {RNA1310_143.1, RNA1509_10996} {RNA1509_10996, RNA815_104.1} Mlig455_041029 {REF} {Length: 14626} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_46, RNA1509_51272} {RNA1310_143.1, RNA1509_51272} {RNA1509_51272, RNA815_104.1} Mlig455_060466 {REF} {Length: 816} {TRANSSPLICED} {RNA1509_51272} {RNA1310_363} {RNA815_104.1}
2.	MligTC455_28185	2254	46.97	Mlig455_042906, Mlig455_062820	Neo: - Age: -	PIF1	5.947	0.991	0.996	0.999	0.995	0.998	0.968	Mlig455_042906 {REF} {Length: 13625} {TRANSSPLICED} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=96.0]} {RNA1509_46} {RNA1310_305} {RNA815_104.1} Mlig455_062820 {REF} {Length: 13236} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_46, RNA1509_6928} {RNA1310_143.1, RNA1509_6928} {RNA1509_6928, RNA815_104.1}
3.	MligTC455_28184	2226	46.37	Mlig455_022004, Mlig455_052045	Neo: - Age: Up-Down-Up	PIF1	5.943	0.978	0.992	0.996	0.996	0.997	0.984	Mlig455_022004 {REF} {Length: 11399} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=121.0]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.6]; AAA domain [PF13604.8, score=53.4]; AAA domain [PF13245.8, score=28.9]; Helicase [PF02689.16, score=24.7]; UvrD-like helicase C-terminal domain [PF13538.8, score=24.1]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=4e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=129, Expect=3e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=6e-30]} {RNA1509_46} {RNA1310_143.1} {RNA815_104.1} Mlig455_052045 {REF} {Length: 10803} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=3e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=133, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_29468, RNA1509_46} {RNA1310_143.1, RNA1509_29468, RNA1509_46} {RNA1509_29468, RNA1509_46, RNA815_104.1}
4.	MligTC455_28187	3330	69.38	Mlig455_028755, Mlig455_042569, Mlig455_060476, Mlig455_063991	Neo: - Age: -	PIF1	5.937	0.971	0.996	0.995	0.995	0.997	0.983	Mlig455_028755 {REF} {Length: 11371} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_46} {RNA1310_143.1} {RNA815_104.1} Mlig455_042569 {REF} {Length: 3442} {TRANSSPLICED} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=95.8]} {RNA1509_51272, RNA1509_7957} {RNA1310_363, RNA1509_7957} {RNA1509_7957, RNA815_104.1} Mlig455_060476 {REF} {Length: 6666} {Pfam: PIF1-like helicase [PF05970.16, score=125.9]; AAA domain [PF13604.8, score=57.0]; AAA domain [PF13245.8, score=31.0]; Helicase [PF02689.16, score=16.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=120, Expect=3e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=124, Expect=9e-30]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=119, Expect=3e-28]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=122, Expect=2e-29]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=121, Expect=5e-29]} {RNA1509_11156, RNA1509_16132} {RNA1310_143.1, RNA1509_11156} {RNA1509_11156, RNA815_104.1} Mlig455_063991 {REF} {Length: 11135} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_46} {RNA1310_143.1} {RNA815_104.1}
5.	MligTC455_28188	1753	36.52	Mlig455_021453, Mlig455_055733	Neo: - Age: Down-Up-Down	PIF1	4.705	0.941	0.981	-	0.891	0.967	0.925	Mlig455_021453 {REF} {Length: 14223} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=87.8]; PIF1-like helicase [PF05970.16, score=33.3]} {RNA1509_16132} {RNA1310_143.1} {RNA815_104.1} Mlig455_055733 {REF} {Length: 12519} {Pfam: PIF1-like helicase [PF05970.16, score=87.7]; AAA domain [PF13604.8, score=46.6]; AAA domain [PF13245.8, score=32.6]; AAA domain [PF13479.8, score=18.5]; Helicase [PF02689.16, score=16.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=71.2, Expect=3e-13]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=72.0, Expect=9e-14]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=72.0, Expect=1e-13]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=72.0, Expect=6e-14]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=73.9, Expect=1e-14]} {RNA1509_16132, RNA1509_34118, RNA1509_35077, RNA1509_4409, RNA1509_45043, RNA1509_5424} {RNA1310_143.1, RNA1509_34118, RNA1509_35077, RNA1509_4409, RNA1509_45043, RNA1509_5424} {RNA1509_34118, RNA1509_35077, RNA1509_4409, RNA1509_45043, RNA1509_5424, RNA815_104.1}
6.	MligTC455_28183	877	18.27	Mlig455_029275	Neo: Irradiation Age: Up-Down-Down	PIF1	4.663	0.858	0.974	-	0.881	0.963	0.987	Mlig455_029275 {REF} {Length: 11512} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_16132, RNA1509_19556} {RNA1310_143.1, RNA1509_19556} {RNA1509_19556, RNA815_104.1}
7.	MligTC455_28189	1402	29.22	Mlig455_021454, Mlig455_029274, Mlig455_043974	Neo: - Age: Down-Up-Down		4.367	0.749	-	0.818	0.921	0.961	0.918	Mlig455_021454 {REF} {Length: 2869} {TRANSSPLICED} {RNA1509_51272} {RNA1310_143.1} {RNA815_104.1} Mlig455_029274 {REF} {Length: 3704} {RNA1509_51272} {RNA1310_143.1} {RNA815_104.1} Mlig455_043974 {REF} {Length: 5826} {RNA1509_16132} {RNA1310_143.1} {RNA815_104.1}
8.	MligTC455_31935	299	6.24	Mlig455_046201	Neo: - Age: - Region-enriched R1: 6.310/0.00233		0.96	-	-	-	-	0.960	-	Mlig455_046201 {REF} {Length: 1782} {Pfam: RICH domain [PF05062.14, score=19.2]} {RNA1509_2515} {RNA1310_26891} {RNA815_3258.1}
9.	MligTC455_28201	266	5.55	Mlig455_061975	Neo: - Age: -		0.951	-	0.951	-	-	-	-	Mlig455_061975 {REF} {Length: 4967} {RNA1509_30620} {RNA1310_13656} {RNA815_8222.1}
10.	MligTC455_42996	1278	26.63	Mlig455_063418, Mlig455_066633	Neo: - Age: logFC(26M/2M)=-0.327 Region-enriched R2: 1.738/0.03767	DYRK2	0.95	-	-	-	-	0.950	-	Mlig455_063418 {REF} {Length: 2420} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=193.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=85.6]; ABC1 atypical kinase-like domain [PF03109.18, score=24.3]; Phosphotransferase enzyme family [PF01636.25, score=22.4]; RIO1 family [PF01163.24, score=18.5]} {Human: ENSG00000127334, DYRK2, dual specificity tyrosine phosphorylation regulated kinase 2, [RH, Score=632, Expect=0.0]} {Mouse: ENSMUSG00000028630, Dyrk2, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2, [RH, Score=633, Expect=0.0]} {Dmel: FBgn0027101, Dyrk3, Dual-specificity tyrosine phosphorylation-regulated kinase 3, [RH, Score=542, Expect=0.0]} {Celegans: WBGene00003150, mbk-2, Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2, [RH, Score=577, Expect=0.0]} {Smed: dd_Smed_v6_10966_0_1, dd_Smed_v6_10966_0_1, [RH, Score=612, Expect=0.0]} {RNA1509_27355, RNA1509_7341} {RNA1310_9403, RNA1509_7341} {RNA1509_7341, RNA815_3107} Mlig455_066633 {REF} {Length: 2424} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=193.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=85.6]; ABC1 atypical kinase-like domain [PF03109.18, score=24.3]; Phosphotransferase enzyme family [PF01636.25, score=22.4]; RIO1 family [PF01163.24, score=18.5]} {Human: ENSG00000127334, DYRK2, dual specificity tyrosine phosphorylation regulated kinase 2, [RH, Score=632, Expect=0.0]} {Mouse: ENSMUSG00000028630, Dyrk2, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2, [RH, Score=633, Expect=0.0]} {Dmel: FBgn0027101, Dyrk3, Dual-specificity tyrosine phosphorylation-regulated kinase 3, [RH, Score=542, Expect=0.0]} {Celegans: WBGene00003150, mbk-2, Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2, [RH, Score=577, Expect=0.0]} {Smed: dd_Smed_v6_10966_0_1, dd_Smed_v6_10966_0_1, [RH, Score=612, Expect=0.0]} {RNA1509_18793, RNA1509_27355} {RNA1310_9403, RNA1509_18793, RNA1509_27355} {RNA1509_18793, RNA1509_27355, RNA815_3107}

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