TomoSeq data search

Data search

Results for MligTC455_28308

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28308

106

2.21

Mlig455_008128, Mlig455_011959

Neo: -

Age: -

GRIA1

Mlig455_008128 {REF} {Length: 558} {NoTransDecoderORF} {RNA1509_47220} {RNA1310_113099} {RNA815_134.1}

Mlig455_011959 {REF} {Length: 2693} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.3]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=66.0]; Ligand-gated ion channel [PF00060.28, score=38.2]} {Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=135, Expect=5e-33]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=132, Expect=9e-32]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=131, Expect=1e-31]} {Mouse: ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=136, Expect=3e-33]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=132, Expect=7e-32]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=132, Expect=6e-32]} {Dmel: FBgn0028422, GluRIID, Glutamate receptor IID, [Score=116, Expect=7e-27]} {Celegans: WBGene00001616, glr-5, GLutamate Receptor family (AMPA), [Score=124, Expect=9e-30]} {Smed: dd_Smed_v6_13705_0_1, dd_Smed_v6_13705_0_1, [Score=117, Expect=2e-27]} {RNA1509_14139} {RNA1310_18228} {RNA815_23153}

Cumulative graph for MligTC455_28308

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.589	1.999	0.99991	1.00000
RegionR2	1.231	1.999	0.50903	0.88696
RegionR3	-0.348	1.999	0.84644	1.00000
RegionR4	1.428	1.999	0.45166	0.78046
RegionR5	0.022	1.999	0.77316	1.00000
RegionR6	1.029	1.999	0.45197	1.00000
RegionR7	-1.582	1.999	1.00000	1.00000
RegionR8	-1.192	1.999	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	4.51	1.999	0.43648	1.00000
RegenerationR2	1.87	1.999	0.24266	0.69039
RegenerationR3	4.541	1.999	0.03513	0.33250
RegenerationR4	3.417	1.999	0.08244	0.45387
RegenerationR5	4.138	1.999	0.03748	0.32083
RegenerationR6	2.094	1.999	0.31628	0.66379
RegenerationBL	2.337	1.999	0.35259	0.72019
RegenerationTP	5.192	1.999	0.07472	0.43746

Genes with expression patterns similar to MligTC455_28308

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28308	106	2.21	Mlig455_008128, Mlig455_011959	Neo: - Age: -	GRIA1	3	-	-	1.000	-	1.000	1.000	Mlig455_008128 {REF} {Length: 558} {NoTransDecoderORF} {RNA1509_47220} {RNA1310_113099} {RNA815_134.1} Mlig455_011959 {REF} {Length: 2693} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=74.3]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=66.0]; Ligand-gated ion channel [PF00060.28, score=38.2]} {Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=135, Expect=5e-33]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=132, Expect=9e-32]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=131, Expect=1e-31]} {Mouse: ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=136, Expect=3e-33]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=132, Expect=7e-32]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=132, Expect=6e-32]} {Dmel: FBgn0028422, GluRIID, Glutamate receptor IID, [Score=116, Expect=7e-27]} {Celegans: WBGene00001616, glr-5, GLutamate Receptor family (AMPA), [Score=124, Expect=9e-30]} {Smed: dd_Smed_v6_13705_0_1, dd_Smed_v6_13705_0_1, [Score=117, Expect=2e-27]} {RNA1509_14139} {RNA1310_18228} {RNA815_23153}
2.	MligTC455_28312	38	0.79	Mlig455_058818	Neo: - Age: -		1.751	-	-	0.760	-	-	0.991	Mlig455_058818 {REF} {Length: 639} {NoTransDecoderORF} {RNA1509_6116} {RNA1310_17411} {RNA815_134.1}
3.	MligTC455_34548	892	18.58	Mlig455_037149, Mlig455_052297	Neo: - Age: Up-Down-Down Region-enriched R3: 1.952/0.03060		0.97	-	-	-	-	-	0.970	Mlig455_037149 {REF} {Length: 10460} {TRANSSPLICED} {Pfam: Lipoprotein amino terminal region [PF01347.24, score=31.2]} {Smed: dd_Smed_v6_636_0_1, dd_Smed_v6_636_0_1, [Score=55.8, Expect=5e-07]} {RNA1509_40938, RNA1509_4906} {RNA1310_88.1, RNA1509_40938} {RNA1509_40938, RNA815_214} Mlig455_052297 {REF} {Length: 9432} {Pfam: Lipoprotein amino terminal region [PF01347.24, score=36.3]} {Smed: dd_Smed_v6_636_0_1, dd_Smed_v6_636_0_1, [Score=52.0, Expect=7e-06]} {RNA1509_4906} {RNA1310_88.1} {RNA815_214}
4.	MligTC455_34547	437	9.11	Mlig455_052252	Neo: - Age: - Region-enriched R3: 2.304/0.02662		0.969	-	-	-	-	-	0.969	Mlig455_052252 {REF} {Length: 1475} {RNA1509_4906} {RNA1310_88.1} {RNA815_214}
5.	MligTC455_33663	2870	59.79	Mlig455_007433, Mlig455_009116, Mlig455_019780, Mlig455_020189, Mlig455_022266, Mlig455_030137, Mlig455_039043, Mlig455_044741, Mlig455_046762	Neo: - Age: Down-Up-Down, logFC(26M/2M)=1.910		0.958	-	-	-	-	0.958	-	Mlig455_007433 {REF} {Length: 1479} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18024} {RNA1310_18995.1} {RNA815_12799.1} Mlig455_009116 {REF} {Length: 1750} {RNA1509_18024} {RNA1310_18995.1} {RNA815_12799.1} Mlig455_019780 {REF} {Length: 1721} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38197} {RNA1310_15214.1} {RNA815_12799.2} Mlig455_020189 {REF} {Length: 2052} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073} Mlig455_022266 {REF} {Length: 1481} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18024} {RNA1310_18995.1} {RNA815_12799.1} Mlig455_030137 {REF} {Length: 3269} {RNA1509_18024} {RNA1310_18995.1} {RNA815_12799.1} Mlig455_039043 {REF} {Length: 1481} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18024} {RNA1310_18995.1} {RNA815_12799.1} Mlig455_044741 {REF} {Length: 1721} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38197} {RNA1310_15214.1} {RNA815_12799.2} Mlig455_046762 {REF} {Length: 1482} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18024} {RNA1310_18995.1} {RNA815_12799.1}
6.	MligTC455_12179	1836	38.24	Mlig455_022912, Mlig455_022921	Neo: - Age: Up-Up-Down		0.954	-	-	-	-	-	0.954	Mlig455_022912 {REF} {Length: 4022} {TRANSSPLICED} {Pfam: PAN domain [PF00024.28, score=61.5]} {RNA1509_35320, RNA1509_963} {RNA1310_1843, RNA1509_35320, RNA1509_963} {RNA1509_35320, RNA1509_963, RNA815_613.1} Mlig455_022921 {REF} {Length: 4010} {TRANSSPLICED} {Pfam: PAN domain [PF00024.28, score=60.5]} {RNA1509_963} {RNA1310_1843} {RNA815_613.1}
7.	MligTC455_15897	286	5.95	Mlig455_057204	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.505	SLC22A5	0.952	-	-	-	-	-	0.952	Mlig455_057204 {REF} {Length: 2977} {Pfam: Sugar (and other) transporter [PF00083.26, score=127.3]; Major Facilitator Superfamily [PF07690.18, score=81.6]} {Human: ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=189, Expect=7e-53]; ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [Score=186, Expect=2e-51]} {Mouse: ENSMUSG00000023828, Slc22a3, solute carrier family 22 (organic cation transporter), member 3, [Score=187, Expect=4e-52]; ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=186, Expect=1e-51]; ENSMUSG00000018900, Slc22a5, solute carrier family 22 (organic cation transporter), member 5, [Score=181, Expect=7e-50]} {Dmel: FBgn0086365, Orct2, Organic cation transporter 2, [Score=237, Expect=7e-71]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=182, Expect=2e-50]} {Smed: dd_Smed_v6_10903_0_1, dd_Smed_v6_10903_0_1, [RH, Score=243, Expect=1e-73]} {RNA1509_37900, RNA1509_7569} {RNA1310_6516, RNA1509_37900} {RNA1509_37900, RNA815_4307.1}
8.	MligTC455_23013	590	12.28	Mlig455_014573	Neo: - Age: - Region-enriched R3: 1.767/0.00535 Region-enriched R5: 1.415/0.01021	DMGDH	0.952	-	-	-	-	-	0.952	Mlig455_014573 {REF} {Length: 4164} {Pfam: Aminomethyltransferase folate-binding domain [PF01571.23, score=214.0]; FAD dependent oxidoreductase [PF01266.26, score=201.5]; Glycine cleavage T-protein C-terminal barrel domain [PF08669.13, score=64.7]; FAD dependent oxidoreductase central domain [PF16350.7, score=55.7]; FAD binding domain [PF01494.21, score=36.2]; Pyridine nucleotide-disulphide oxidoreductase [PF13738.8, score=28.6]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=26.9]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=26.5]; FAD binding domain [PF00890.26, score=23.9]; Thi4 family [PF01946.19, score=20.8]; FAD dependent oxidoreductase [PF12831.9, score=18.9]} {Human: ENSG00000132837, DMGDH, dimethylglycine dehydrogenase, [RH, Score=947, Expect=0.0]} {Mouse: ENSMUSG00000042102, Dmgdh, dimethylglycine dehydrogenase precursor, [RH, Score=949, Expect=0.0]} {Dmel: FBgn0034276, Sardh, Sarcosine dehydrogenase, [Score=321, Expect=1e-95]} {Celegans: WBGene00021355, Y37E3.17, [RH, Score=450, Expect=3e-145]} {Smed: dd_Smed_v6_4377_0_3, dd_Smed_v6_4377_0_3, [RH, Score=921, Expect=0.0]} {RNA1509_18378, RNA1509_22900, RNA1509_29343, RNA1509_44138, RNA1509_55845} {RNA1310_3038.1, RNA1509_18378, RNA1509_22900, RNA1509_29343, RNA1509_44138, RNA1509_55845} {RNA1509_18378, RNA1509_22900, RNA1509_29343, RNA1509_44138, RNA1509_55845, RNA815_868.1}
9.	MligTC455_53719	706	14.71	Mlig455_059448	Neo: - Age: Down-Down-Up		0.952	-	-	-	-	-	0.952	Mlig455_059448 {REF} {Length: 4096} {RNA1509_48147, RNA1509_50093, RNA1509_56993, RNA1509_9886} {RNA1310_3275.1, RNA1509_48147, RNA1509_50093, RNA1509_56993} {RNA1509_48147, RNA1509_50093, RNA1509_56993, RNA815_4482}
10.	MligTC455_19866	483	10.05	Mlig455_053987	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.360 Region-enriched R4: 2.346/0.01408 Region-enriched R3: 2.007/0.01395		0.951	-	-	-	-	-	0.951	Mlig455_053987 {REF} {Length: 3038} {RNA1509_43528} {RNA1310_35262.2, RNA1509_43528} {RNA1509_43528, RNA815_26662}
11.	MligTC455_38447	1215	25.32	Mlig455_064649	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.231		0.951	-	-	-	-	0.951	-	Mlig455_064649 {REF} {Length: 2160} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=27.3]} {Dmel: FBgn0263353, CG11000, [Score=61.6, Expect=2e-10]} {Celegans: WBGene00009534, F38B7.3, [Score=69.3, Expect=9e-13]} {Smed: dd_Smed_v6_4018_0_1, dd_Smed_v6_4018_0_1, [Score=100, Expect=9e-24]} {RNA1509_10365} {RNA1310_20310} {RNA815_26365}
12.	MligTC455_53923	413	8.6	Mlig455_031505	Neo: - Age: - Region-enriched R3: 2.700/0.00511	MGAM	0.951	-	-	-	-	-	0.951	Mlig455_031505 {REF} {Length: 3805} {Pfam: Glycosyl hydrolases family 31 [PF01055.28, score=338.5]} {Human: ENSG00000282607, MGAM, maltase-glucoamylase, [Score=363, Expect=4e-110]; ENSG00000257335, MGAM, maltase-glucoamylase, [Score=363, Expect=4e-110]; ENSG00000090402, SI, sucrase-isomaltase, [Score=359, Expect=6e-109]; ENSG00000278563, MGAM2, maltase-glucoamylase 2 (putative), [Score=347, Expect=9e-105]; ENSG00000257743, MGAM2, maltase-glucoamylase 2 (putative), [Score=347, Expect=9e-105]} {Mouse: ENSMUSG00000068587, Mgam, maltase-glucoamylase, [Score=361, Expect=6e-112]; ENSMUSG00000027790, Sis, sucrase isomaltase (alpha-glucosidase), [Score=353, Expect=4e-107]} {Dmel: FBgn0027588, GCS2alpha, Glucosidase 2 alpha subunit, [Score=150, Expect=6e-38]} {Celegans: WBGene00019895, aagr-2, Acid Alpha Glucosidase Relate, [Score=364, Expect=3e-115]} {Smed: dd_Smed_v6_4668_0_1, dd_Smed_v6_4668_0_1, [Score=333, Expect=6e-104]} {RNA1509_3169} {RNA1310_1135} {RNA815_4014}
13.	MligTC455_30251	170	3.54	Mlig455_065306	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_065306 {REF} {Length: 2067} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=28.7]} {Smed: dd_Smed_v6_2232_0_1, dd_Smed_v6_2232_0_1, [Score=46.6, Expect=2e-06]} {RNA1509_33034} {RNA1310_48677} {RNA815_43418.2}
14.	MligTC455_30864	195	4.06	Mlig455_047961	Neo: - Age: - Region-enriched R3: 2.896/0.00551	DNAH5	0.95	-	-	-	-	-	0.950	Mlig455_047961 {REF} {Length: 14878} {TRANSSPLICED} {Pfam: Dynein heavy chain, N-terminal region 1 [PF08385.14, score=518.1]; Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=466.3]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=405.0]; Dynein heavy chain C-terminal domain [PF18199.3, score=316.9]; P-loop containing dynein motor region D4 [PF12780.9, score=301.7]; ATP-binding dynein motor region [PF12781.9, score=293.7]; P-loop containing dynein motor region [PF12775.9, score=232.6]; Dynein heavy chain AAA lid domain [PF18198.3, score=175.7]; Microtubule-binding stalk of dynein motor [PF12777.9, score=169.1]; Dynein heavy chain region D6 P-loop domain [PF03028.17, score=118.4]; AAA domain (dynein-related subfamily) [PF07728.16, score=75.1]; Dynein heavy chain AAA lid domain [PF17852.3, score=66.8]; AAA+ lid domain [PF17857.3, score=64.9]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=27.5]; AAA ATPase domain [PF13191.8, score=25.4]; AAA domain [PF13401.8, score=21.5]; P-loop containing region of AAA domain [PF13555.8, score=20.4]} {Human: ENSG00000039139, DNAH5, dynein axonemal heavy chain 5, [Score=5736, Expect=0.0]} {Mouse: ENSMUSG00000022262, Dnah5, dynein, axonemal, heavy chain 5, [Score=5732, Expect=0.0]} {Dmel: FBgn0267432, kl-3, male fertility factor kl3, [RH, Score=4301, Expect=0.0]} {Celegans: WBGene00000485, che-3, Cytoplasmic dynein 2 heavy chain 1, [Score=958, Expect=0.0]} {Smed: dd_Smed_v6_4569_0_1, dd_Smed_v6_4569_0_1, [Score=6120, Expect=0.0]} {RNA1509_13592, RNA1509_33092, RNA1509_36063, RNA1509_4209, RNA1509_55698} {RNA1310_41.1, RNA1509_13592, RNA1509_36063, RNA1509_4209, RNA1509_55698} {RNA1509_13592, RNA1509_36063, RNA1509_4209, RNA1509_55698, RNA815_44.1}
15.	MligTC455_34873	4345	90.52	Mlig455_008692	Neo: - Age: logFC(26M/2M)=-0.240 Regeneration-downregulated R6: -1.035 Regeneration-depleted R6: -1.035	CALM2	0.95	-	-	-	-	0.950	-	Mlig455_008692 {REF} {Length: 1875} {Pfam: EF hand [PF00036.34, score=122.3]; EF-hand domain pair [PF13499.8, score=114.4]; EF hand [PF13202.8, score=98.9]; EF-hand domain [PF13405.8, score=97.8]; EF-hand domain pair [PF13833.8, score=76.7]; Dockerin type I domain [PF00404.20, score=45.8]; EF-hand domain [PF14658.8, score=41.4]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=40.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=30.7]; EF-hand domain [PF08976.13, score=23.3]; Caleosin related protein [PF05042.15, score=18.7]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=139, Expect=6e-42]; ENSG00000160014, CALM3, calmodulin 3, [Score=138, Expect=3e-42]; ENSG00000198668, CALM1, calmodulin 1, [Score=138, Expect=3e-42]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=139, Expect=5e-42]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=138, Expect=2e-42]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=138, Expect=2e-42]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=135, Expect=2e-41]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=136, Expect=6e-42]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=136, Expect=5e-42]} {RNA1509_24073, RNA1509_32541, RNA1509_5234} {RNA1310_36831, RNA1509_24073, RNA1509_32541, RNA1509_5234} {RNA1509_24073, RNA1509_32541, RNA1509_5234, RNA815_17221.1}

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