M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28477

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28477 3 0.06 Mlig455_062436

Neo: -

Age: -

 NAV2 Mlig455_062436 {REF} {Length: 3478} {Pfam: Outer membrane protein (OmpH-like) [PF03938.16, score=22.7]} {Human: ENSG00000166833, NAV2, neuron navigator 2, [Score=70.9, Expect=3e-12]} {Mouse: ENSMUSG00000052512, Nav2, neuron navigator 2, [Score=66.2, Expect=6e-11]} {Dmel: FBgn0263873, sick, sickie, [Score=58.2, Expect=1e-08]} {Smed: dd_Smed_v6_7701_0_2, dd_Smed_v6_7701_0_2, [Score=70.9, Expect=7e-13]} {RNA1509_59238} {RNA1310_596.1} {RNA815_2589}

Cumulative graph for MligTC455_28477

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_28477

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28477 3 0.06 Mlig455_062436

Neo: -

Age: -

 NAV2 1 - - - - 1.000 - Mlig455_062436 {REF} {Length: 3478} {Pfam: Outer membrane protein (OmpH-like) [PF03938.16, score=22.7]} {Human: ENSG00000166833, NAV2, neuron navigator 2, [Score=70.9, Expect=3e-12]} {Mouse: ENSMUSG00000052512, Nav2, neuron navigator 2, [Score=66.2, Expect=6e-11]} {Dmel: FBgn0263873, sick, sickie, [Score=58.2, Expect=1e-08]} {Smed: dd_Smed_v6_7701_0_2, dd_Smed_v6_7701_0_2, [Score=70.9, Expect=7e-13]} {RNA1509_59238} {RNA1310_596.1} {RNA815_2589}
2. MligTC455_50030 11 0.23 Mlig455_010598

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_010598 {REF} {Length: 1950} {Pfam: Sodium:dicarboxylate symporter family [PF00375.20, score=71.4]} {Celegans: WBGene00001620, glt-1, Excitatory amino acid transporter, [Score=52.4, Expect=5e-07]} {Smed: dd_Smed_v6_1106_0_1, dd_Smed_v6_1106_0_1, [Score=50.4, Expect=2e-06]} {RNA1310_104113}
3. MligTC455_14586 41 0.85 Mlig455_021826

Neo: -

Age: Down-Down-Up

 0.982 - - - - 0.982 - Mlig455_021826 {REF} {Length: 2345} {Pfam: NHL repeat [PF01436.23, score=29.4]} {Dmel: FBgn0265356, tn, thin, [Score=52.0, Expect=1e-06]} {RNA1310_10763.1} {RNA815_45413}
4. MligTC455_32334 269 5.59 Mlig455_028407, Mlig455_028421, Mlig455_028442

Neo: -

Age: -

 YARS2 0.982 - - - - 0.982 -

Mlig455_028407 {REF} {Length: 1531} {Smed: dd_Smed_v6_11234_0_1, dd_Smed_v6_11234_0_1, [Score=47.0, Expect=6e-06]} {RNA1509_33400} {RNA1310_18111.1} {RNA815_22000}

Mlig455_028421 {REF} {Length: 2278} {TRANSSPLICED} {Pfam: tRNA synthetases class I (W and Y) [PF00579.27, score=208.3]} {Human: ENSG00000139131, YARS2, tyrosyl-tRNA synthetase 2, [RH, Score=249, Expect=1e-76]} {Mouse: ENSMUSG00000022792, Yars2, tyrosyl-tRNA synthetase 2 (mitochondrial), [RH, Score=258, Expect=3e-80]} {Dmel: FBgn0035064, TyrRS-m, Tyrosyl-tRNA synthetase, mitochondrial, [RH, Score=287, Expect=1e-91]} {Celegans: WBGene00006968, yars-2, Tyrosine--tRNA ligase, [RH, Score=188, Expect=3e-54]} {Smed: dd_Smed_v6_11234_0_1, dd_Smed_v6_11234_0_1, [RH, Score=246, Expect=3e-76]} {RNA1509_33400} {RNA1310_18111.1} {RNA815_22000}

Mlig455_028442 {REF} {Length: 2278} {TRANSSPLICED} {Pfam: tRNA synthetases class I (W and Y) [PF00579.27, score=208.3]} {Human: ENSG00000139131, YARS2, tyrosyl-tRNA synthetase 2, [RH, Score=249, Expect=1e-76]} {Mouse: ENSMUSG00000022792, Yars2, tyrosyl-tRNA synthetase 2 (mitochondrial), [RH, Score=258, Expect=3e-80]} {Dmel: FBgn0035064, TyrRS-m, Tyrosyl-tRNA synthetase, mitochondrial, [RH, Score=287, Expect=1e-91]} {Celegans: WBGene00006968, yars-2, Tyrosine--tRNA ligase, [RH, Score=188, Expect=3e-54]} {Smed: dd_Smed_v6_11234_0_1, dd_Smed_v6_11234_0_1, [RH, Score=246, Expect=3e-76]} {RNA1509_33400} {RNA1310_18111.1, RNA1509_33400} {RNA1509_33400, RNA815_22000}
5. MligTC455_40503 29 0.6 Mlig455_046776

Neo: -

Age: Down-Up-Down

 FAM81A 0.976 - - - - 0.976 - Mlig455_046776 {REF} {Length: 2776} {TRANSSPLICED} {Human: ENSG00000157470, FAM81A, family with sequence similarity 81 member A, [RH, Score=138, Expect=1e-36]} {Mouse: ENSMUSG00000032224, Fam81a, family with sequence similarity 81, member A, [RH, Score=135, Expect=4e-36]; ENSMUSG00000109228, Fam81b, family with sequence similarity 81, member B, [RH, Score=134, Expect=7e-35]} {Smed: dd_Smed_v6_13185_0_1, dd_Smed_v6_13185_0_1, [RH, Score=251, Expect=2e-80]} {RNA1509_4545} {RNA1310_18883, RNA1509_4545} {RNA1509_4545, RNA815_6683}
6. MligTC455_09220 23 0.48 Mlig455_006877

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.226

 0.971 - - - - 0.971 - Mlig455_006877 {REF} {Length: 913} {NoTransDecoderORF} {RNA1310_97207} {RNA815_52780}
7. MligTC455_22831 49 1.03 Mlig455_067844

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_067844 {REF} {Length: 1015} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}
8. MligTC455_08301 9 0.19 Mlig455_034387

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_034387 {REF} {Length: 1074} {NoTransDecoderORF} {RNA1509_18523} {RNA1310_13418.1} {RNA815_10309}
9. MligTC455_12337 48 1 Mlig455_033695

Neo: -

Age: Down-Up-Up

Region-enriched R4: 4.547/0.01060

 0.95 - - - - 0.950 - Mlig455_033695 {REF} {Length: 1173} {RNA1509_11770} {RNA1310_67223} {RNA815_31938}
10. MligTC455_42394 87 1.82 Mlig455_030204

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_030204 {REF} {Length: 3028} {RNA1310_37957.1} {RNA815_29846}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA