TomoSeq data search

Data search

Results for MligTC455_28500

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_28500	67	1.39	Mlig455_002066, Mlig455_002067, Mlig455_050053	Neo: - Age: logFC(26M/2M)=-0.477	RTL1	Mlig455_002066 {REF} {Length: 1318} {Pfam: Integrase core domain [PF00665.28, score=36.4]} {Smed: dd_Smed_v6_45837_0_2, dd_Smed_v6_45837_0_2, [Score=55.1, Expect=1e-09]} {RNA1509_4878} {RNA1310_542.1} {RNA815_7586} Mlig455_002067 {REF} {Length: 5099} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.8]; Integrase zinc binding domain [PF17921.3, score=37.3]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.6]; Zinc knuckle [PF13696.8, score=21.7]; Aspartyl protease [PF13650.8, score=21.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.4]; Zinc knuckle [PF00098.25, score=21.3]; Aspartyl protease [PF09668.12, score=21.1]; H2C2 zinc finger [PF09337.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=98.2, Expect=8e-20]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=318, Expect=5e-95]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} Mlig455_050053 {REF} {Length: 8908} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.3]; Integrase core domain [PF00665.28, score=46.4]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28500

1.39

Mlig455_002066, Mlig455_002067, Mlig455_050053

Neo: -

Age: logFC(26M/2M)=-0.477

RTL1

Mlig455_002066 {REF} {Length: 1318} {Pfam: Integrase core domain [PF00665.28, score=36.4]} {Smed: dd_Smed_v6_45837_0_2, dd_Smed_v6_45837_0_2, [Score=55.1, Expect=1e-09]} {RNA1509_4878} {RNA1310_542.1} {RNA815_7586}

Mlig455_002067 {REF} {Length: 5099} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.8]; Integrase zinc binding domain [PF17921.3, score=37.3]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.6]; Zinc knuckle [PF13696.8, score=21.7]; Aspartyl protease [PF13650.8, score=21.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.4]; Zinc knuckle [PF00098.25, score=21.3]; Aspartyl protease [PF09668.12, score=21.1]; H2C2 zinc finger [PF09337.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=98.2, Expect=8e-20]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=318, Expect=5e-95]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Mlig455_050053 {REF} {Length: 8908} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.3]; Integrase core domain [PF00665.28, score=46.4]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Cumulative graph for MligTC455_28500

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.231	1.478	0.93209	1.00000
RegionR2	0.354	1.478	0.80705	1.00000
RegionR3	-0.601	1.478	0.50536	0.99690
RegionR4	-0.449	1.478	0.81318	1.00000
RegionR5	-0.941	1.478	0.30774	0.64544
RegionR6	-0.848	1.478	0.40961	0.97893
RegionR7	1.185	1.478	0.42009	1.00000
RegionR8	1.069	1.478	0.58297	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.144	1.478	0.80004	1.00000
RegenerationR2	0.602	1.478	0.48973	0.86753
RegenerationR3	-0.085	1.478	0.92585	1.00000
RegenerationR4	-0.121	1.478	0.87178	1.00000
RegenerationR5	0.285	1.478	0.75360	0.97283
RegenerationR6	0.786	1.478	0.48599	0.79582
RegenerationBL	-0.375	1.478	0.76956	1.00000
RegenerationTP	-1.378	1.478	0.39506	0.82594

Genes with expression patterns similar to MligTC455_28500

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28500	67	1.39	Mlig455_002066, Mlig455_002067, Mlig455_050053	Neo: - Age: logFC(26M/2M)=-0.477	RTL1	3	1.000	-	-	-	1.000	1.000	Mlig455_002066 {REF} {Length: 1318} {Pfam: Integrase core domain [PF00665.28, score=36.4]} {Smed: dd_Smed_v6_45837_0_2, dd_Smed_v6_45837_0_2, [Score=55.1, Expect=1e-09]} {RNA1509_4878} {RNA1310_542.1} {RNA815_7586} Mlig455_002067 {REF} {Length: 5099} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.8]; Integrase zinc binding domain [PF17921.3, score=37.3]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.6]; Zinc knuckle [PF13696.8, score=21.7]; Aspartyl protease [PF13650.8, score=21.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.4]; Zinc knuckle [PF00098.25, score=21.3]; Aspartyl protease [PF09668.12, score=21.1]; H2C2 zinc finger [PF09337.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=98.2, Expect=8e-20]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=318, Expect=5e-95]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1} Mlig455_050053 {REF} {Length: 8908} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.3]; Integrase core domain [PF00665.28, score=46.4]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts