TomoSeq data search

Data search

Results for MligTC455_28687

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28687

579

12.07

Mlig455_042104

Neo: Int S/G2/M

Age: -

Mlig455_042104 {REF} {Length: 1409} {TRANSSPLICED} {RNA1509_35740} {RNA1310_43519, RNA1509_35740} {RNA1509_35740, RNA815_21134}

Cumulative graph for MligTC455_28687

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.746	3.915	0.53418	1.00000
RegionR2	-0.04	3.915	0.93730	1.00000
RegionR3	0.433	3.915	0.31162	0.85090
RegionR4	0.502	3.915	0.33136	0.64964
RegionR5	0.125	3.915	0.75503	1.00000
RegionR6	0.089	3.915	0.84225	1.00000
RegionR7	-0.6	3.915	0.26091	0.88809
RegionR8	0.237	3.915	0.68180	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.179	3.915	0.18577	0.92656
RegenerationR2	-0.859	3.915	0.09453	0.48919
RegenerationR3	-1.267	3.915	0.01916	0.25362
RegenerationR4	-0.824	3.915	0.13975	0.56143
RegenerationR5	-0.451	3.915	0.38122	0.78741
RegenerationR6	-0.455	3.915	0.40077	0.73790
RegenerationBL	-0.382	3.915	0.53941	0.89839
RegenerationTP	-2.162	3.915	0.00642	0.13506

Genes with expression patterns similar to MligTC455_28687

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28687	579	12.07	Mlig455_042104	Neo: Int S/G2/M Age: -		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_042104 {REF} {Length: 1409} {TRANSSPLICED} {RNA1509_35740} {RNA1310_43519, RNA1509_35740} {RNA1509_35740, RNA815_21134}
2.	MligTC455_50082	698	14.53	Mlig455_040956	Neo: Neoblast Age: -	LSM8	2.539	-	-	0.855	0.961	-	0.723	Mlig455_040956 {REF} {Length: 1124} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=64.8]} {Human: ENSG00000128534, LSM8, LSM8 homolog, U6 small nuclear RNA associated, [RH, Score=109, Expect=2e-32]} {Mouse: ENSMUSG00000044155, Lsm8, LSM8 homolog, U6 small nuclear RNA associated, [RH, Score=109, Expect=1e-32]} {Dmel: FBgn0035271, CG2021, [RH, Score=102, Expect=5e-30]} {Celegans: WBGene00003082, lsm-8, LSM Sm-like protein, [RH, Score=104, Expect=1e-30]} {Smed: dd_Smed_v6_5695_0_1, dd_Smed_v6_5695_0_1, [RH, Score=98.6, Expect=1e-28]} {RNA1509_35831, RNA1509_38732} {RNA1310_36435.1, RNA1509_35831, RNA1509_38732} {RNA1509_35831, RNA1509_38732, RNA815_34145}
3.	MligTC455_23780	715	14.9	Mlig455_016765	Neo: Int S/G2/M Age: - Regeneration-upregulated R6: 1.869 Regeneration-enriched R6: 1.869	SNRNP200	1.892	-	-	-	0.979	-	0.913	Mlig455_016765 {REF} {Length: 2988} {Pfam: Sec63 Brl domain [PF02889.18, score=245.8]; Helicase conserved C-terminal domain [PF00271.33, score=19.0]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [Score=810, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [Score=810, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [Score=811, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [Score=675, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=635, Expect=0.0]} {RNA1509_1464, RNA1509_51603} {RNA1310_469.2, RNA1509_51603} {RNA1509_51603, RNA815_1538}
4.	MligTC455_11674	239	4.98	Mlig455_063568	Neo: - Age: -		1.668	-	-	-	-	0.957	0.711	Mlig455_063568 {REF} {Length: 3222} {TRANSSPLICED} {Pfam: F-box domain [PF00646.35, score=28.5]; F-box-like [PF12937.9, score=25.7]} {RNA1509_13155} {RNA1310_3624} {RNA815_4072}
5.	MligTC455_29507	477	9.93	Mlig455_061492	Neo: - Age: -	SZT2	0.97	-	-	0.970	-	-	-	Mlig455_061492 {REF} {Length: 14726} {TRANSSPLICED} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=111.5]} {Human: ENSG00000198198, SZT2, SZT2, KICSTOR complex subunit, [RH, Score=318, Expect=1e-85]} {Mouse: ENSMUSG00000033253, Szt2, seizure threshold 2, [RH, Score=330, Expect=1e-89]} {Dmel: FBgn0003326, sca, scabrous, [Score=98.2, Expect=1e-19]} {Celegans: WBGene00010013, F54B3.1, [RH, Score=117, Expect=2e-25]} {Smed: dd_Smed_v6_8946_0_1, dd_Smed_v6_8946_0_1, [Score=111, Expect=1e-23]} {RNA1509_25909} {RNA1310_92.1} {RNA815_13061}
6.	MligTC455_31217	271	5.65	Mlig455_049697, Mlig455_052840	Neo: - Age: -		0.956	-	-	0.956	-	-	-	Mlig455_049697 {REF} {Length: 3844} {NoTransDecoderORF} {RNA1310_20088} {RNA815_52008} Mlig455_052840 {REF} {Length: 689} {NoTransDecoderORF} {RNA1310_50586} {RNA815_62419}
7.	MligTC455_51074	585	12.2	Mlig455_054379, Mlig455_054401	Neo: - Age: -		0.952	-	-	0.952	-	-	-	Mlig455_054379 {REF} {Length: 2291} {RNA1310_46059} {RNA815_34780} Mlig455_054401 {REF} {Length: 764} {RNA1310_46059} {RNA815_59068}
8.	MligTC455_35227	526	10.95	Mlig455_046602	Neo: - Age: Down-Up-Up, logFC(26M/2M)=1.369		0.95	-	-	0.950	-	-	-	Mlig455_046602 {REF} {Length: 5225} {Pfam: SEA domain [PF01390.22, score=33.0]} {Mouse: ENSMUSG00000073490, Ifi207, interferon activated gene 207, [Score=62.0, Expect=6e-09]} {Dmel: FBgn0053265, Muc68E, Mucin 68E, [Score=73.6, Expect=2e-12]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=52.0, Expect=4e-06]} {RNA1509_58226} {RNA1310_6940.1} {RNA815_3893.1}
9.	MligTC455_47611	558	11.62	Mlig455_032020	Neo: - Age: -	BBOX1	0.95	-	-	0.950	-	-	-	Mlig455_032020 {REF} {Length: 1876} {TRANSSPLICED} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=143.1]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=40.5]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [Score=223, Expect=3e-68]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [Score=230, Expect=4e-71]} {Dmel: FBgn0030575, CG5321, [Score=235, Expect=9e-73]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [Score=156, Expect=7e-43]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [Score=65.9, Expect=6e-12]} {RNA1509_19035} {RNA1310_2841} {RNA815_6735}

Berezikov Lab - 2020-2021 © ERIBA