M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28751

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28751 26 0.54 Mlig455_055121

Neo: -

Age: -

 Mlig455_055121 {REF} {Length: 3874} {Pfam: Integrase zinc binding domain [PF17921.3, score=52.6]; Integrase core domain [PF00665.28, score=46.7]; Integrase core domain [PF13683.8, score=19.1]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=48.9, Expect=8e-06]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=130, Expect=8e-34]} {RNA1509_6409} {RNA1310_782} {RNA815_2488.1}

Cumulative graph for MligTC455_28751

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.233 0.789 1.00000 1.00000
RegionR2 0.548 0.789 1.00000 1.00000
RegionR3 0.419 0.789 1.00000 1.00000
RegionR4 -0.361 0.789 0.99995 1.00000
RegionR5 0.287 0.789 1.00000 1.00000
RegionR6 0.351 0.789 0.99999 1.00000
RegionR7 0.124 0.789 0.99999 1.00000
RegionR8 -0.135 0.789 0.99998 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.353 0.789 1.00000 1.00000
RegenerationR2 2.978 0.789 0.04658 0.35627
RegenerationR3 3.394 0.789 0.08655 0.47801
RegenerationR4 3.236 0.789 0.05832 0.38760
RegenerationR5 2.995 0.789 0.05712 0.38158
RegenerationR6 3.773 0.789 0.06986 0.33118
RegenerationBL -0.045 0.789 1.00000 1.00000
RegenerationTP 4.311 0.789 0.12908 0.54150


Genes with expression patterns similar to MligTC455_28751

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28751 26 0.54 Mlig455_055121

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_055121 {REF} {Length: 3874} {Pfam: Integrase zinc binding domain [PF17921.3, score=52.6]; Integrase core domain [PF00665.28, score=46.7]; Integrase core domain [PF13683.8, score=19.1]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=48.9, Expect=8e-06]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=130, Expect=8e-34]} {RNA1509_6409} {RNA1310_782} {RNA815_2488.1}
2. MligTC455_15212 12 0.26 Mlig455_059838

Neo: -

Age: -

 ADRA2A 0.994 - - - 0.994 - - Mlig455_059838 {REF} {Length: 2182} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=239.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=36.3]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=28.6]; Olfactory receptor [PF13853.8, score=28.5]} {Human: ENSG00000150594, ADRA2A, adrenoceptor alpha 2A, [Score=200, Expect=2e-57]} {Mouse: ENSMUSG00000033717, Adra2a, adrenergic receptor, alpha 2a, [Score=198, Expect=1e-56]} {Dmel: FBgn0004514, Oct-TyrR, Octopamine-Tyramine receptor, [Score=185, Expect=5e-51]} {Celegans: WBGene00004777, ser-2, Tyramine receptor Ser-2, [Score=195, Expect=5e-56]} {Smed: dd_Smed_v6_19063_0_1, dd_Smed_v6_19063_0_1, [Score=235, Expect=1e-71]}
3. MligTC455_28753 64 1.32 Mlig455_018409, Mlig455_067736, Mlig455_069521

Neo: -

Age: -

 0.99 - - - 0.990 - -

Mlig455_018409 {REF} {Length: 979} {RNA1509_27801} {RNA1310_32897} {RNA815_15953.2}

Mlig455_067736 {REF} {Length: 1136} {RNA1509_13494} {RNA1310_32897} {RNA815_15953.1}

Mlig455_069521 {REF} {Length: 982} {RNA1509_27801} {RNA1310_32897} {RNA815_15953.2}
4. MligTC455_42423 63 1.3 Mlig455_041414, Mlig455_041450

Neo: -

Age: -

 DTHD1 0.99 - - - 0.990 - -

Mlig455_041414 {REF} {Length: 3226} {Pfam: Death domain [PF00531.24, score=26.5]} {Human: ENSG00000197057, DTHD1, death domain containing 1, [RH, Score=100, Expect=8e-21]} {Mouse: ENSMUSG00000090326, Dthd1, death domain containing 1, [Score=78.6, Expect=2e-14]} {Smed: dd_Smed_v6_13807_0_1, dd_Smed_v6_13807_0_1, [Score=160, Expect=1e-40]} {RNA1310_77685}

Mlig455_041450 {REF} {Length: 3327} {Pfam: Death domain [PF00531.24, score=26.5]} {Human: ENSG00000197057, DTHD1, death domain containing 1, [RH, Score=98.2, Expect=3e-20]} {Mouse: ENSMUSG00000090326, Dthd1, death domain containing 1, [Score=76.6, Expect=8e-14]} {Smed: dd_Smed_v6_13807_0_1, dd_Smed_v6_13807_0_1, [RH, Score=160, Expect=2e-40]} {RNA1509_58078} {RNA1310_77685} {RNA815_43052}
5. MligTC455_12670 24 0.5 Mlig455_011866, Mlig455_011892

Neo: -

Age: -

 0.984 - - - 0.984 - -

Mlig455_011866 {REF} {Length: 866} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48204} {RNA1310_43694} {RNA815_42620}

Mlig455_011892 {REF} {Length: 257} {NoTransDecoderORF}
6. MligTC455_40247 59 1.23 Mlig455_031375

Neo: -

Age: -

 0.979 - - - 0.979 - - Mlig455_031375 {REF} {Length: 1511} {RNA1310_73524} {RNA815_47280}
7. MligTC455_02657 31 0.65 Mlig455_062192

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_062192 {REF} {Length: 860} {Pfam: Keratin, high sulfur B2 protein [PF01500.19, score=27.8]} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=166, Expect=2e-46]}
8. MligTC455_22915 94 1.95 Mlig455_058987

Neo: -

Age: Up-Down-Up

 POMGNT1 0.961 - - - 0.961 - - Mlig455_058987 {REF} {Length: 2797} {Pfam: GNT-I family [PF03071.17, score=40.7]} {Human: ENSG00000085998, POMGNT1, protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-), [Score=107, Expect=2e-24]} {Mouse: ENSMUSG00000028700, Pomgnt1, protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase, [Score=109, Expect=2e-25]} {Dmel: FBgn0034521, Mgat1, Mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 1, [Score=58.2, Expect=7e-09]} {Smed: dd_Smed_v6_17617_0_1, dd_Smed_v6_17617_0_1, [Score=80.1, Expect=5e-16]} {RNA1310_17377} {RNA815_13131}
9. MligTC455_18409 787 16.39 Mlig455_022750

Neo: -

Age: -

Region-enriched R7: 3.442/0.00109
Region-enriched R6: 3.369/0.00318

 0.96 - - - 0.960 - - Mlig455_022750 {REF} {Length: 785} {RNA1509_45129} {RNA1310_50739, RNA1509_45129} {RNA1509_45129, RNA815_24186}
10. MligTC455_36939 24 0.5 Mlig455_037184

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_037184 {REF} {Length: 1194} {RNA1509_59364} {RNA1310_35271} {RNA815_15447.1}
11. MligTC455_43383 29 0.6 Mlig455_035092

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_035092 {REF} {Length: 654} {NoTransDecoderORF} {RNA1310_42279} {RNA815_20885}
12. MligTC455_47327 240 5 Mlig455_060357

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 - Mlig455_060357 {REF} {Length: 1153} {RNA1509_50932} {RNA1310_40486, RNA1509_50932}
13. MligTC455_03555 28 0.59 Mlig455_009266

Neo: -

Age: Up-Up-Down

 0.952 - - - 0.952 - - Mlig455_009266 {REF} {Length: 1235} {NoTransDecoderORF} {RNA1509_42100} {RNA1310_56786} {RNA815_61979}
14. MligTC455_11959 21 0.44 Mlig455_026336

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_026336 {REF} {Length: 990} {NoTransDecoderORF} {RNA1509_56385} {RNA1310_67879} {RNA815_51996}
15. MligTC455_18456 1096 22.84 Mlig455_025389

Neo: -

Age: Down-Down-Up

Region-enriched R6: 6.958/0.00000
Region-enriched R2: 6.228/0.00011

 0.95 - - - 0.950 - - Mlig455_025389 {REF} {Length: 781} {RNA1509_31308, RNA1509_36358, RNA1509_37939} {RNA1310_53601, RNA1509_31308, RNA1509_36358, RNA1509_37939} {RNA1509_31308, RNA1509_36358, RNA1509_37939, RNA815_21102}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA