TomoSeq data search

Data search

Results for MligTC455_28940

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28940

418

8.71

Mlig455_002547, Mlig455_002591

Neo: -

Age: Up-Down-Down

HTT

Mlig455_002547 {REF} {Length: 10238} {TRANSSPLICED} {Human: ENSG00000197386, HTT, huntingtin, [RH, Score=219, Expect=5e-56]} {Mouse: ENSMUSG00000029104, Htt, huntingtin, [RH, Score=204, Expect=7e-52]} {Smed: dd_Smed_v6_3049_0_1, dd_Smed_v6_3049_0_1, [RH, Score=79.0, Expect=4e-14]} {RNA1509_23695, RNA1509_46447} {RNA1310_626.1, RNA1509_23695, RNA1509_46447} {RNA1509_23695, RNA1509_46447, RNA815_593}

Mlig455_002591 {REF} {Length: 10552} {TRANSSPLICED} {Human: ENSG00000197386, HTT, huntingtin, [RH, Score=216, Expect=4e-55]} {Mouse: ENSMUSG00000029104, Htt, huntingtin, [RH, Score=203, Expect=2e-51]} {Smed: dd_Smed_v6_3049_0_1, dd_Smed_v6_3049_0_1, [RH, Score=78.6, Expect=6e-14]} {RNA1509_4095} {RNA1310_733.1} {RNA815_593}

Cumulative graph for MligTC455_28940

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.913	3.532	0.55670	1.00000
RegionR2	1.025	3.532	0.20310	0.56507
RegionR3	0.751	3.532	0.28049	0.82412
RegionR4	-0.33	3.532	0.69031	0.98199
RegionR5	0.048	3.532	0.93899	1.00000
RegionR6	0.366	3.532	0.56122	1.00000
RegionR7	-0.965	3.532	0.24965	0.87601
RegionR8	-1.807	3.532	0.10435	0.60327

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.506	3.532	0.29608	0.99329
RegenerationR2	1.172	3.532	0.09542	0.49057
RegenerationR3	0.315	3.532	0.69106	0.94465
RegenerationR4	0.56	3.532	0.50045	0.86976
RegenerationR5	1.003	3.532	0.17312	0.60222
RegenerationR6	-0.317	3.532	0.71146	0.93060
RegenerationBL	0.726	3.532	0.48396	0.84942
RegenerationTP	1.501	3.532	0.13685	0.55449

Genes with expression patterns similar to MligTC455_28940

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28940	418	8.71	Mlig455_002547, Mlig455_002591	Neo: - Age: Up-Down-Down	HTT	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_002547 {REF} {Length: 10238} {TRANSSPLICED} {Human: ENSG00000197386, HTT, huntingtin, [RH, Score=219, Expect=5e-56]} {Mouse: ENSMUSG00000029104, Htt, huntingtin, [RH, Score=204, Expect=7e-52]} {Smed: dd_Smed_v6_3049_0_1, dd_Smed_v6_3049_0_1, [RH, Score=79.0, Expect=4e-14]} {RNA1509_23695, RNA1509_46447} {RNA1310_626.1, RNA1509_23695, RNA1509_46447} {RNA1509_23695, RNA1509_46447, RNA815_593} Mlig455_002591 {REF} {Length: 10552} {TRANSSPLICED} {Human: ENSG00000197386, HTT, huntingtin, [RH, Score=216, Expect=4e-55]} {Mouse: ENSMUSG00000029104, Htt, huntingtin, [RH, Score=203, Expect=2e-51]} {Smed: dd_Smed_v6_3049_0_1, dd_Smed_v6_3049_0_1, [RH, Score=78.6, Expect=6e-14]} {RNA1509_4095} {RNA1310_733.1} {RNA815_593}
2.	MligTC455_21363	305	6.36	Mlig455_032478	Neo: - Age: -	NAV2	1.693	0.950	-	-	-	-	0.743	Mlig455_032478 {REF} {Length: 7006} {TRANSSPLICED} {Human: ENSG00000166833, NAV2, neuron navigator 2, [Score=338, Expect=5e-95]; ENSG00000067798, NAV3, neuron navigator 3, [Score=328, Expect=7e-92]} {Mouse: ENSMUSG00000052512, Nav2, neuron navigator 2, [Score=338, Expect=3e-95]; ENSMUSG00000020181, Nav3, neuron navigator 3, [Score=330, Expect=1e-92]} {Dmel: FBgn0263873, sick, sickie, [Score=276, Expect=2e-75]} {Celegans: WBGene00006788, unc-53, Adapter protein unc-53, [Score=141, Expect=1e-33]} {Smed: dd_Smed_v6_2618_0_1, dd_Smed_v6_2618_0_1, [Score=355, Expect=1e-105]} {RNA1509_11366} {RNA1310_2078} {RNA815_6698}
3.	MligTC455_25757	113	2.35	Mlig455_054537	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.630		0.972	-	-	-	0.972	-	-	Mlig455_054537 {REF} {Length: 4261} {RNA1509_26204} {RNA1310_7137, RNA1509_26204} {RNA1509_26204, RNA815_17475}
4.	MligTC455_32729	499	10.39	Mlig455_015659	Neo: - Age: -	KIF6	0.954	0.954	-	-	-	-	-	Mlig455_015659 {REF} {Length: 4782} {TRANSSPLICED} {Pfam: Kinesin motor domain [PF00225.25, score=321.7]; Microtubule binding [PF16796.7, score=90.7]} {Human: ENSG00000164627, KIF6, kinesin family member 6, [RH, Score=744, Expect=0.0]} {Mouse: ENSMUSG00000023999, Kif6, kinesin family member 6, [RH, Score=754, Expect=0.0]} {Dmel: FBgn0004380, Klp64D, Kinesin-like protein at 64D, [Score=242, Expect=2e-67]} {Celegans: WBGene00002230, klp-20, Kinesin-like protein, [Score=233, Expect=8e-65]} {Smed: dd_Smed_v6_11012_0_1, dd_Smed_v6_11012_0_1, [RH, Score=685, Expect=0.0]} {RNA1509_12990} {RNA1310_5256} {RNA815_9688}
5.	MligTC455_32032	70	1.46	Mlig455_017979	Neo: - Age: -		0.951	-	-	0.951	-	-	-	Mlig455_017979 {REF} {Length: 3320} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=59.1]} {RNA1509_44324} {RNA1310_37384} {RNA815_32175}
6.	MligTC455_48093	83	1.73	Mlig455_070622	Neo: - Age: Down-Down-Up	FYN	0.95	-	-	-	0.950	-	-	Mlig455_070622 {REF} {Length: 2880} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=306.1]; Protein kinase domain [PF00069.27, score=156.2]; SH2 domain [PF00017.26, score=72.4]; SH3 domain [PF00018.30, score=40.0]; Variant SH3 domain [PF14604.8, score=36.0]; Haspin like kinase domain [PF12330.10, score=20.9]; ABC1 atypical kinase-like domain [PF03109.18, score=19.0]; Variant SH3 domain [PF07653.19, score=18.7]} {Human: ENSG00000010810, FYN, FYN proto-oncogene, Src family tyrosine kinase, [Score=481, Expect=4e-163]; ENSG00000111816, FRK, fyn related Src family tyrosine kinase, [Score=463, Expect=2e-156]; ENSG00000197122, SRC, SRC proto-oncogene, non-receptor tyrosine kinase, [Score=457, Expect=7e-154]} {Mouse: ENSMUSG00000019843, Fyn, Fyn proto-oncogene, [Score=482, Expect=1e-163]; ENSMUSG00000019779, Frk, fyn-related kinase, [Score=462, Expect=6e-156]} {Dmel: FBgn0264959, Src42A, Src oncogene at 42A, [Score=469, Expect=5e-159]} {Celegans: WBGene00005077, src-1, Tyrosine protein-kinase src-1, [Score=455, Expect=4e-154]} {Smed: dd_Smed_v6_6272_0_1, dd_Smed_v6_6272_0_1, [RH, Score=545, Expect=0.0]} {RNA1509_40287} {RNA1310_11764.1} {RNA815_4295}

Berezikov Lab - 2020-2021 © ERIBA