TomoSeq data search

Data search

Results for MligTC455_28972

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_28972	23	0.49	Mlig455_018056, Mlig455_032868, Mlig455_037705, Mlig455_046367, Mlig455_046397, Mlig455_050001	Neo: - Age: -		Mlig455_018056 {REF} {Length: 1607} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=30.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=101, Expect=3e-22]} {RNA1509_51609} {RNA1310_80414} Mlig455_032868 {REF} {Length: 2402} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=74.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.1]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=159, Expect=2e-41]} {RNA1509_51609} {RNA1310_58380} {RNA815_17471.1} Mlig455_037705 {REF} {Length: 3870} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.8]; Retroviral aspartyl protease [PF00077.22, score=19.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=3e-42]} {RNA1509_51609} {RNA1310_3461} {RNA815_21312.1} Mlig455_046367 {REF} {Length: 1982} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.8]; Retroviral aspartyl protease [PF00077.22, score=19.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=3e-42]} {RNA1509_51609} {RNA1310_3461} Mlig455_046397 {REF} {Length: 2357} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=112.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=105.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=82.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.4]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=249, Expect=3e-73]} {RNA1509_59537} {RNA1310_3461} Mlig455_050001 {REF} {Length: 4526} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.1]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=9e-42]} {RNA1509_16469} {RNA1310_4476.2} {RNA815_11220}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28972

0.49

Mlig455_018056, Mlig455_032868, Mlig455_037705, Mlig455_046367, Mlig455_046397, Mlig455_050001

Neo: -

Age: -

Mlig455_018056 {REF} {Length: 1607} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=30.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=101, Expect=3e-22]} {RNA1509_51609} {RNA1310_80414}

Mlig455_032868 {REF} {Length: 2402} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=74.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.1]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=159, Expect=2e-41]} {RNA1509_51609} {RNA1310_58380} {RNA815_17471.1}

Mlig455_037705 {REF} {Length: 3870} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.8]; Retroviral aspartyl protease [PF00077.22, score=19.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=3e-42]} {RNA1509_51609} {RNA1310_3461} {RNA815_21312.1}

Mlig455_046367 {REF} {Length: 1982} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.8]; Retroviral aspartyl protease [PF00077.22, score=19.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=3e-42]} {RNA1509_51609} {RNA1310_3461}

Mlig455_046397 {REF} {Length: 2357} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=112.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=105.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=82.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.4]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=249, Expect=3e-73]} {RNA1509_59537} {RNA1310_3461}

Mlig455_050001 {REF} {Length: 4526} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.1]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=9e-42]} {RNA1509_16469} {RNA1310_4476.2} {RNA815_11220}

Cumulative graph for MligTC455_28972

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.857	0.756	1.00000	1.00000
RegionR2	1.054	0.756	0.99968	1.00000
RegionR3	0.238	0.756	0.92907	1.00000
RegionR4	-1.147	0.756	0.99014	1.00000
RegionR5	0.122	0.756	0.98408	1.00000
RegionR6	1.878	0.756	0.37861	0.95897
RegionR7	0.114	0.756	1.00000	1.00000
RegionR8	0.599	0.756	0.99988	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.678	0.756	0.99964	1.00000
RegenerationR2	1.105	0.756	0.78507	0.98494
RegenerationR3	1.273	0.756	0.81014	0.98502
RegenerationR4	-1.02	0.756	0.48011	0.85867
RegenerationR5	0.538	0.756	0.96412	1.00000
RegenerationR6	-0.639	0.756	0.48031	0.79195
RegenerationBL	2.838	0.756	0.93695	1.00000
RegenerationTP	2.655	0.756	0.51928	0.91360

Genes with expression patterns similar to MligTC455_28972

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28972	23	0.49	Mlig455_018056, Mlig455_032868, Mlig455_037705, Mlig455_046367, Mlig455_046397, Mlig455_050001	Neo: - Age: -		1	-	-	-	-	1.000	-	Mlig455_018056 {REF} {Length: 1607} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=30.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=101, Expect=3e-22]} {RNA1509_51609} {RNA1310_80414} Mlig455_032868 {REF} {Length: 2402} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=74.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.1]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=159, Expect=2e-41]} {RNA1509_51609} {RNA1310_58380} {RNA815_17471.1} Mlig455_037705 {REF} {Length: 3870} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.8]; Retroviral aspartyl protease [PF00077.22, score=19.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=3e-42]} {RNA1509_51609} {RNA1310_3461} {RNA815_21312.1} Mlig455_046367 {REF} {Length: 1982} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.7]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.8]; Retroviral aspartyl protease [PF00077.22, score=19.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=3e-42]} {RNA1509_51609} {RNA1310_3461} Mlig455_046397 {REF} {Length: 2357} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=112.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=105.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=82.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.4]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=249, Expect=3e-73]} {RNA1509_59537} {RNA1310_3461} Mlig455_050001 {REF} {Length: 4526} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=23.1]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=161, Expect=9e-42]} {RNA1509_16469} {RNA1310_4476.2} {RNA815_11220}
2.	MligTC455_32786	131	2.74	Mlig455_049672	Neo: - Age: - Region-enriched R8: 3.549/0.01587		0.956	-	-	-	-	0.956	-	Mlig455_049672 {REF} {Length: 1559} {RNA1509_2768} {RNA1310_57876} {RNA815_42450.2}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts