M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29053

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29053 521 10.86 Mlig455_027056

Neo: -

Age: -

 PKM Mlig455_027056 {REF} {Length: 4221} {TRANSSPLICED} {Pfam: Pyruvate kinase, barrel domain [PF00224.23, score=301.8]; Pyruvate kinase, alpha/beta domain [PF02887.18, score=108.0]} {Human: ENSG00000067225, PKM, pyruvate kinase M1/2, [Score=384, Expect=2e-126]} {Mouse: ENSMUSG00000032294, Pkm, pyruvate kinase, muscle, [Score=382, Expect=8e-126]} {Dmel: FBgn0267385, PyK, Pyruvate kinase, [Score=416, Expect=4e-139]} {Celegans: WBGene00014001, pyk-2, Pyruvate kinase, [Score=381, Expect=1e-125]} {Smed: dd_Smed_v6_1511_0_1, dd_Smed_v6_1511_0_1, [RH, Score=535, Expect=0.0]} {RNA1509_3400} {RNA1310_12334.1} {RNA815_4151.1}

Cumulative graph for MligTC455_29053

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.075 3.801 0.95843 1.00000
RegionR2 0.187 3.801 0.75515 1.00000
RegionR3 -0.159 3.801 0.76050 1.00000
RegionR4 0.955 3.801 0.11988 0.34683
RegionR5 0.4 3.801 0.39824 0.75485
RegionR6 -0.153 3.801 0.77559 1.00000
RegionR7 -0.185 3.801 0.78683 1.00000
RegionR8 -0.968 3.801 0.30761 0.94018

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.126 3.801 0.95347 1.00000
RegenerationR2 0.393 3.801 0.41637 0.82468
RegenerationR3 0.706 3.801 0.21674 0.65308
RegenerationR4 0.194 3.801 0.74003 0.96747
RegenerationR5 0.699 3.801 0.17865 0.60720
RegenerationR6 0.571 3.801 0.33015 0.67665
RegenerationBL 0.617 3.801 0.36160 0.73074
RegenerationTP 1.55 3.801 0.02890 0.28587


Genes with expression patterns similar to MligTC455_29053

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29053 521 10.86 Mlig455_027056

Neo: -

Age: -

 PKM 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_027056 {REF} {Length: 4221} {TRANSSPLICED} {Pfam: Pyruvate kinase, barrel domain [PF00224.23, score=301.8]; Pyruvate kinase, alpha/beta domain [PF02887.18, score=108.0]} {Human: ENSG00000067225, PKM, pyruvate kinase M1/2, [Score=384, Expect=2e-126]} {Mouse: ENSMUSG00000032294, Pkm, pyruvate kinase, muscle, [Score=382, Expect=8e-126]} {Dmel: FBgn0267385, PyK, Pyruvate kinase, [Score=416, Expect=4e-139]} {Celegans: WBGene00014001, pyk-2, Pyruvate kinase, [Score=381, Expect=1e-125]} {Smed: dd_Smed_v6_1511_0_1, dd_Smed_v6_1511_0_1, [RH, Score=535, Expect=0.0]} {RNA1509_3400} {RNA1310_12334.1} {RNA815_4151.1}
2. MligTC455_29052 594 12.38 Mlig455_009595

Neo: -

Age: -

 PKM 5.643 0.963 0.964 0.982 0.968 0.786 0.980 Mlig455_009595 {REF} {Length: 3210} {TRANSSPLICED} {Pfam: Pyruvate kinase, barrel domain [PF00224.23, score=302.0]; Pyruvate kinase, alpha/beta domain [PF02887.18, score=107.9]} {Human: ENSG00000067225, PKM, pyruvate kinase M1/2, [Score=385, Expect=1e-126]} {Mouse: ENSMUSG00000032294, Pkm, pyruvate kinase, muscle, [Score=383, Expect=4e-126]} {Dmel: FBgn0267385, PyK, Pyruvate kinase, [Score=415, Expect=8e-139]} {Celegans: WBGene00014001, pyk-2, Pyruvate kinase, [Score=380, Expect=3e-125]} {Smed: dd_Smed_v6_1511_0_1, dd_Smed_v6_1511_0_1, [RH, Score=535, Expect=0.0]} {RNA1509_10484} {RNA1310_12334.1} {RNA815_4151.1}
3. MligTC455_40662 520 10.84 Mlig455_050390

Neo: -

Age: -

Region-enriched R4: 1.266/0.02674

 0.98 - - - - - 0.980 Mlig455_050390 {REF} {Length: 1035} {TRANSSPLICED} {RNA1509_28209} {RNA1310_36562} {RNA815_14595}
4. MligTC455_15588 223 4.64 Mlig455_018016, Mlig455_018021

Neo: -

Age: -

 0.957 - - - - - 0.957

Mlig455_018016 {REF} {Length: 3621} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=57.1]} {Celegans: WBGene00007064, 2RSSE.1, [RH, Score=129, Expect=4e-33]} {Smed: dd_Smed_v6_6099_0_1, dd_Smed_v6_6099_0_1, [RH, Score=260, Expect=4e-79]} {RNA1509_47974, RNA1509_60122, RNA1509_9501} {RNA1310_8454, RNA1509_47974, RNA1509_60122} {RNA1509_47974, RNA1509_60122, RNA815_6408}

Mlig455_018021 {REF} {Length: 2077} {Mouse: ENSMUSG00000025272, Tro, trophinin, [Score=45.1, Expect=8e-06]} {RNA1509_9501} {RNA1310_8454} {RNA815_14573}
5. MligTC455_43920 98 2.03 Mlig455_010730

Neo: -

Age: -

 KATNA1 0.955 - - - - - 0.955 Mlig455_010730 {REF} {Length: 4654} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=128.7]; AAA+ lid domain [PF17862.3, score=44.9]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=29.4]; Vps4 C terminal oligomerisation domain [PF09336.12, score=28.9]; AAA ATPase domain [PF13191.8, score=23.8]; AAA domain [PF13671.8, score=22.4]; AAA domain [PF13238.8, score=20.2]; AAA domain [PF13479.8, score=20.2]; AAA domain (dynein-related subfamily) [PF07728.16, score=18.8]} {Human: ENSG00000186625, KATNA1, katanin catalytic subunit A1, [RH, Score=479, Expect=5e-166]; ENSG00000102781, KATNAL1, katanin catalytic subunit A1 like 1, [RH, Score=473, Expect=1e-163]} {Mouse: ENSMUSG00000115937, Katna1, katanin p60 (ATPase-containing) subunit A1, [RH, Score=476, Expect=1e-164]; ENSMUSG00000019794, Katna1, katanin p60 (ATPase-containing) subunit A1, [RH, Score=476, Expect=1e-164]; ENSMUSG00000041298, Katnal1, katanin p60 subunit A-like 1, [RH, Score=466, Expect=1e-160]} {Dmel: FBgn0040208, Kat60, Katanin 60, [RH, Score=460, Expect=6e-157]} {Celegans: WBGene00003183, mei-1, Meiotic spindle formation protein mei-1, [RH, Score=280, Expect=1e-88]} {Smed: dd_Smed_v6_5163_0_1, dd_Smed_v6_5163_0_1, [RH, Score=441, Expect=7e-152]} {RNA1509_20183, RNA1509_36249} {RNA1310_9174.1, RNA1509_36249} {RNA1509_36249, RNA815_4035}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA