TomoSeq data search

Data search

Results for MligTC455_29093

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_29093

135

2.80

Mlig455_024226, Mlig455_045478, Mlig455_054179, Mlig455_060728

Neo: -

Age: -

Mlig455_024226 {REF} {Length: 306} {NoTransDecoderORF} {RNA1509_13072} {RNA1310_989.1} {RNA815_1327.1}

Mlig455_045478 {REF} {Length: 515} {NoTransDecoderORF} {RNA1509_13072} {RNA1310_77126} {RNA815_21592.1}

Mlig455_054179 {REF} {Length: 239} {NoTransDecoderORF} {RNA1509_46649} {RNA1310_12003.3} {RNA815_25773.1}

Mlig455_060728 {REF} {Length: 2580} {NoTransDecoderORF} {RNA1509_52931} {RNA1310_61993} {RNA815_38253.2}

Cumulative graph for MligTC455_29093

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.447	2.33	0.38567	1.00000
RegionR2	1.293	2.33	0.24611	0.62291
RegionR3	0.052	2.33	0.83930	1.00000
RegionR4	1.238	2.33	0.24447	0.54280
RegionR5	0.303	2.33	0.71899	1.00000
RegionR6	0.429	2.33	0.66411	1.00000
RegionR7	1.407	2.33	0.22988	0.85288
RegionR8	-0.275	2.33	0.93153	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.419	2.33	0.99994	1.00000
RegenerationR2	1.089	2.33	0.06317	0.41221
RegenerationR3	1.583	2.33	0.04161	0.35771
RegenerationR4	-0.426	2.33	0.58861	0.90830
RegenerationR5	1.233	2.33	0.06413	0.39990
RegenerationR6	0.449	2.33	0.58136	0.85832
RegenerationBL	0.824	2.33	0.44877	0.81562
RegenerationTP	1.133	2.33	0.30252	0.74815

Genes with expression patterns similar to MligTC455_29093

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_29093	135	2.8	Mlig455_024226, Mlig455_045478, Mlig455_054179, Mlig455_060728	Neo: - Age: -		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_024226 {REF} {Length: 306} {NoTransDecoderORF} {RNA1509_13072} {RNA1310_989.1} {RNA815_1327.1} Mlig455_045478 {REF} {Length: 515} {NoTransDecoderORF} {RNA1509_13072} {RNA1310_77126} {RNA815_21592.1} Mlig455_054179 {REF} {Length: 239} {NoTransDecoderORF} {RNA1509_46649} {RNA1310_12003.3} {RNA815_25773.1} Mlig455_060728 {REF} {Length: 2580} {NoTransDecoderORF} {RNA1509_52931} {RNA1310_61993} {RNA815_38253.2}
2.	MligTC455_41509	625	13.02	Mlig455_051523, Mlig455_051559	Neo: - Age: -	CDK14	0.965	-	-	-	0.965	-	-	Mlig455_051523 {REF} {Length: 5006} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=227.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=112.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [RH, Score=423, Expect=5e-141]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [RH, Score=412, Expect=2e-137]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [RH, Score=424, Expect=5e-141]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [RH, Score=405, Expect=3e-134]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [RH, Score=441, Expect=5e-147]} {Celegans: WBGene00022519, ZC123.4, [RH, Score=348, Expect=6e-111]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [RH, Score=460, Expect=5e-152]} {RNA1509_30378} {RNA1310_6181} {RNA815_15743} Mlig455_051559 {REF} {Length: 4223} {Pfam: Protein kinase domain [PF00069.27, score=227.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=112.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [RH, Score=423, Expect=5e-141]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [RH, Score=412, Expect=2e-137]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [RH, Score=424, Expect=5e-141]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [RH, Score=405, Expect=3e-134]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [RH, Score=441, Expect=5e-147]} {Celegans: WBGene00022519, ZC123.4, [RH, Score=348, Expect=6e-111]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [RH, Score=460, Expect=5e-152]} {RNA1509_30378} {RNA1310_6181} {RNA815_15743}
3.	MligTC455_26261	214	4.45	Mlig455_008295	Neo: - Age: logFC(26M/2M)=-0.864	NR1I3	0.964	-	-	-	0.964	-	-	Mlig455_008295 {REF} {Length: 4225} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=73.2]} {Human: ENSG00000143257, NR1I3, nuclear receptor subfamily 1 group I member 3, [Score=104, Expect=2e-23]} {Mouse: ENSMUSG00000005677, Nr1i3, nuclear receptor subfamily 1, group I, member 3, [Score=99.8, Expect=4e-22]; ENSMUSG00000022809, Nr1i2, nuclear receptor subfamily 1, group I, member 2, [Score=99.4, Expect=1e-21]; ENSMUSG00000022479, Vdr, vitamin D (1,25-dihydroxyvitamin D3) receptor, [Score=95.9, Expect=2e-20]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [Score=98.2, Expect=7e-21]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=108, Expect=2e-24]} {Smed: dd_Smed_v6_5200_0_1, dd_Smed_v6_5200_0_1, [Score=290, Expect=7e-90]} {RNA1509_15212} {RNA1310_9731.1} {RNA815_11206}
4.	MligTC455_53955	385	8.01	Mlig455_016192	Neo: - Age: - Region-enriched R2: 2.185/0.00203	TMEM216	0.962	-	-	-	0.962	-	-	Mlig455_016192 {REF} {Length: 1165} {TRANSSPLICED} {Pfam: Predicted membrane protein [PF09799.11, score=85.0]} {Human: ENSG00000187049, TMEM216, transmembrane protein 216, [RH, Score=61.2, Expect=7e-12]} {Mouse: ENSMUSG00000024667, Tmem216, transmembrane protein 216, [RH, Score=63.9, Expect=3e-13]} {Dmel: FBgn0037615, CG11760, [RH, Score=63.2, Expect=6e-13]} {Smed: dd_Smed_v6_14636_0_1, dd_Smed_v6_14636_0_1, [RH, Score=82.4, Expect=1e-20]} {RNA1509_39699, RNA1509_53860} {RNA1310_30237, RNA1509_39699, RNA1509_53860} {RNA1509_39699, RNA1509_53860, RNA815_653}
5.	MligTC455_48191	183	3.82	Mlig455_007668, Mlig455_020903	Neo: - Age: logFC(26M/2M)=0.417	DLG1	0.959	-	-	0.959	-	-	-	Mlig455_007668 {REF} {Length: 3126} {Pfam: Guanylate kinase [PF00625.23, score=176.3]; PDZ domain [PF00595.26, score=49.8]; Variant SH3 domain [PF07653.19, score=34.9]; SH3 domain [PF00018.30, score=30.2]; PDZ domain [PF17820.3, score=19.7]; Variant SH3 domain [PF14604.8, score=18.5]} {Human: ENSG00000075711, DLG1, discs large MAGUK scaffold protein 1, [Score=435, Expect=1e-140]; ENSG00000150672, DLG2, discs large MAGUK scaffold protein 2, [Score=431, Expect=6e-138]} {Mouse: ENSMUSG00000052572, Dlg2, discs large MAGUK scaffold protein 2, [RH, Score=434, Expect=8e-146]} {Dmel: FBgn0001624, dlg1, discs large 1, [RH, Score=436, Expect=6e-141]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [Score=346, Expect=1e-106]} {Smed: dd_Smed_v6_8511_0_1, dd_Smed_v6_8511_0_1, [Score=298, Expect=8e-93]} {RNA1509_59616} {RNA1310_7336} {RNA815_28073} Mlig455_020903 {REF} {Length: 1523} {Pfam: Guanylate kinase [PF00625.23, score=164.6]; PDZ domain [PF00595.26, score=50.8]; PDZ domain [PF17820.3, score=20.2]} {Human: ENSG00000075711, DLG1, discs large MAGUK scaffold protein 1, [Score=298, Expect=2e-91]; ENSG00000082458, DLG3, discs large MAGUK scaffold protein 3, [Score=292, Expect=4e-93]; ENSG00000150672, DLG2, discs large MAGUK scaffold protein 2, [Score=291, Expect=4e-88]} {Mouse: ENSMUSG00000022770, Dlg1, discs large MAGUK scaffold protein 1, [Score=297, Expect=3e-91]; ENSMUSG00000052572, Dlg2, discs large MAGUK scaffold protein 2, [Score=295, Expect=9e-95]; ENSMUSG00000000881, Dlg3, discs large MAGUK scaffold protein 3, [Score=294, Expect=5e-94]} {Dmel: FBgn0001624, dlg1, discs large 1, [Score=304, Expect=6e-94]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [Score=254, Expect=2e-75]} {Smed: dd_Smed_v6_8511_0_1, dd_Smed_v6_8511_0_1, [Score=189, Expect=7e-54]} {RNA1509_59616} {RNA1310_7336} {RNA815_36982}
6.	MligTC455_48190	92	1.92	Mlig455_020859	Neo: - Age: -		0.958	-	-	0.958	-	-	-	Mlig455_020859 {REF} {Length: 761} {NoTransDecoderORF} {RNA1509_59616} {RNA1310_7336} {RNA815_28073}
7.	MligTC455_16735	31	0.64	Mlig455_010958, Mlig455_033088	Neo: - Age: -		0.956	-	-	0.956	-	-	-	Mlig455_010958 {REF} {Length: 959} {RNA1509_35668} {RNA1310_30833} {RNA815_18824.1} Mlig455_033088 {REF} {Length: 912} {RNA1509_35668} {RNA1310_30833} {RNA815_18824.1}
8.	MligTC455_36196	40	0.84	Mlig455_043230	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.348	TNS1	0.953	-	-	-	-	-	0.953	Mlig455_043230 {REF} {Length: 3190} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=46.7]; SH2 domain [PF00017.26, score=40.2]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=170, Expect=9e-43]; ENSG00000136205, TNS3, tensin 3, [Score=163, Expect=2e-40]; ENSG00000111077, TNS2, tensin 2, [Score=162, Expect=4e-40]; ENSG00000131746, TNS4, tensin 4, [Score=162, Expect=9e-41]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=169, Expect=1e-42]; ENSMUSG00000020422, Tns3, tensin 3, [Score=166, Expect=1e-41]; ENSMUSG00000017607, Tns4, tensin 4, [Score=162, Expect=3e-41]} {Dmel: FBgn0000244, by, blistery, [Score=163, Expect=2e-41]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=181, Expect=1e-50]} {Smed: dd_Smed_v6_4494_0_2, dd_Smed_v6_4494_0_2, [Score=179, Expect=6e-47]} {RNA1509_28824, RNA1509_59734} {RNA1310_7318, RNA1509_59734} {RNA1509_59734, RNA815_6926}

Berezikov Lab - 2020-2021 © ERIBA