M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29143

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29143 1700 35.41 Mlig455_001383, Mlig455_008521, Mlig455_008522, Mlig455_012765, Mlig455_023869, Mlig455_027188, Mlig455_028936, Mlig455_043487, Mlig455_045183

Neo: -

Age: -

Regeneration-enriched TP: 2.606
Regeneration-enriched BL: 2.151

Mlig455_001383 {REF} {Length: 3263} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_17419}

Mlig455_008521 {REF} {Length: 4608} {RNA1509_13072} {RNA1310_989.1} {RNA815_1327.1}

Mlig455_008522 {REF} {Length: 3311} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_17419}

Mlig455_012765 {REF} {Length: 4664} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=21.3]} {RNA1509_13072} {RNA1310_3487} {RNA815_17419}

Mlig455_023869 {REF} {Length: 2050} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_1327.1}

Mlig455_027188 {REF} {Length: 2031} {NoTransDecoderORF} {RNA1509_29353} {RNA1310_3487} {RNA815_10062.1}

Mlig455_028936 {REF} {Length: 3550} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_3487} {RNA815_17419}

Mlig455_043487 {REF} {Length: 3388} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_17419}

Mlig455_045183 {REF} {Length: 1220} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_989.1} {RNA815_1327.1}

Cumulative graph for MligTC455_29143

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.327 5.3 0.81735 1.00000
RegionR2 0.958 5.3 0.13378 0.45407
RegionR3 -0.146 5.3 0.79920 1.00000
RegionR4 0.525 5.3 0.40854 0.73546
RegionR5 -0.416 5.3 0.45293 0.81472
RegionR6 -0.733 5.3 0.21692 0.79537
RegionR7 -0.443 5.3 0.55516 1.00000
RegionR8 0.581 5.3 0.45953 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.941 5.3 0.18633 0.92717
RegenerationR2 1.304 5.3 0.02334 0.25103
RegenerationR3 1.489 5.3 0.01926 0.25451
RegenerationR4 0.606 5.3 0.37060 0.79439
RegenerationR5 1.875 5.3 0.00333 0.10211
RegenerationR6 2.351 5.3 0.00040 0.02064
RegenerationBL 2.151 5.3 0.00027 0.00920
RegenerationTP 2.606 5.3 0.00007 0.00902


Genes with expression patterns similar to MligTC455_29143

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29143 1700 35.41 Mlig455_001383, Mlig455_008521, Mlig455_008522, Mlig455_012765, Mlig455_023869, Mlig455_027188, Mlig455_028936, Mlig455_043487, Mlig455_045183

Neo: -

Age: -

Regeneration-enriched TP: 2.606
Regeneration-enriched BL: 2.151

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_001383 {REF} {Length: 3263} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_17419}

Mlig455_008521 {REF} {Length: 4608} {RNA1509_13072} {RNA1310_989.1} {RNA815_1327.1}

Mlig455_008522 {REF} {Length: 3311} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_17419}

Mlig455_012765 {REF} {Length: 4664} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=21.3]} {RNA1509_13072} {RNA1310_3487} {RNA815_17419}

Mlig455_023869 {REF} {Length: 2050} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_1327.1}

Mlig455_027188 {REF} {Length: 2031} {NoTransDecoderORF} {RNA1509_29353} {RNA1310_3487} {RNA815_10062.1}

Mlig455_028936 {REF} {Length: 3550} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_3487} {RNA815_17419}

Mlig455_043487 {REF} {Length: 3388} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_4523} {RNA815_17419}

Mlig455_045183 {REF} {Length: 1220} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_989.1} {RNA815_1327.1}
2. MligTC455_29095 291 6.07 Mlig455_008520, Mlig455_062905, Mlig455_064803

Neo: -

Age: -

 3.471 - - 0.881 0.906 0.721 0.963

Mlig455_008520 {REF} {Length: 5586} {RNA1509_55508} {RNA1310_19597} {RNA815_1327.1}

Mlig455_062905 {REF} {Length: 2632} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072, RNA1509_29940} {RNA1310_4523, RNA1509_29940} {RNA1509_29940, RNA815_17419}

Mlig455_064803 {REF} {Length: 1273} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.7]; Endonuclease-reverse transcriptase [PF14529.8, score=48.8]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=105, Expect=8e-24]} {RNA1509_13072} {RNA1310_989.1} {RNA815_1327.1}
3. MligTC455_31902 293 6.11 Mlig455_022360

Neo: -

Age: -

Region-enriched R2: 3.717/0.04491

 WSCD2 2.567 - - 0.966 - 0.855 0.746 Mlig455_022360 {REF} {Length: 5720} {Pfam: WSC domain [PF01822.21, score=54.8]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=48.1, Expect=5e-06]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=48.5, Expect=2e-06]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=51.6, Expect=1e-07]} {RNA1509_31473} {RNA1310_51110.1} {RNA815_20842.1}
4. MligTC455_31904 110 2.3 Mlig455_045507

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.927

 2.442 - - 0.966 - 0.735 0.741 Mlig455_045507 {REF} {Length: 5997} {Pfam: PAS domain [PF13188.9, score=18.9]} {RNA1509_21038} {RNA1310_11597.1} {RNA815_20842.1}
5. MligTC455_28979 388 8.09 Mlig455_053605

Neo: -

Age: Down-Up-Up

 EIF2B5 1.753 - - - 0.786 - 0.967 Mlig455_053605 {REF} {Length: 5360} {TRANSSPLICED} {Pfam: eIF4-gamma/eIF5/eIF2-epsilon [PF02020.20, score=55.3]; Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=35.6]; Nucleotidyl transferase [PF00483.25, score=28.9]; MobA-like NTP transferase domain [PF12804.9, score=25.1]} {Human: ENSG00000145191, EIF2B5, eukaryotic translation initiation factor 2B subunit epsilon, [RH, Score=288, Expect=2e-86]} {Mouse: ENSMUSG00000003235, Eif2b5, eukaryotic translation initiation factor 2B, subunit 5 epsilon, [RH, Score=300, Expect=4e-91]} {Dmel: FBgn0023512, eIF2Bepsilon, eukaryotic translation initiation factor 2B subunit epsilon, [RH, Score=229, Expect=1e-65]} {Smed: dd_Smed_v6_4470_0_1, dd_Smed_v6_4470_0_1, [Score=111, Expect=2e-25]} {RNA1509_6322} {RNA1310_5215} {RNA815_2200.1}
6. MligTC455_22562 62 1.28 Mlig455_004519

Neo: -

Age: -

 1.745 - - 0.964 0.781 - - Mlig455_004519 {REF} {Length: 131} {NoTransDecoderORF} {RNA1310_25912.1} {RNA815_57017}
7. MligTC455_13875 92 1.92 Mlig455_025418

Neo: -

Age: -

 1.71 - - - - 0.748 0.962 Mlig455_025418 {REF} {Length: 631} {NoTransDecoderORF}
8. MligTC455_15587 41 0.86 Mlig455_061123

Neo: -

Age: Down-Up-Down

 0.975 - - 0.975 - - - Mlig455_061123 {REF} {Length: 1254} {NoTransDecoderORF} {RNA1509_36803} {RNA1310_43494} {RNA815_8499}
9. MligTC455_25226 35 0.72 Mlig455_023978

Neo: -

Age: Up-Down-Down

 0.969 - - - - - 0.969 Mlig455_023978 {REF} {Length: 5232} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=23.1]} {RNA1509_49686} {RNA1310_5450.1} {RNA815_16253.2}
10. MligTC455_23617 4708 98.09 Mlig455_008651, Mlig455_069417

Neo: -

Age: -

 C5orf49 0.959 - - - - 0.959 -

Mlig455_008651 {REF} {Length: 762} {Pfam: Domain of unknown function (DUF4541) [PF15074.8, score=117.5]} {Human: ENSG00000215217, C5orf49, chromosome 5 open reading frame 49, [RH, Score=97.4, Expect=9e-26]} {Mouse: ENSMUSG00000021534, 1700001L19Rik, RIKEN cDNA 1700001L19 gene, [RH, Score=103, Expect=5e-28]} {Smed: dd_Smed_v6_6211_0_1, dd_Smed_v6_6211_0_1, [RH, Score=136, Expect=1e-41]} {RNA1509_14600} {RNA1310_49397} {RNA815_23943.1}

Mlig455_069417 {REF} {Length: 762} {Pfam: Domain of unknown function (DUF4541) [PF15074.8, score=117.5]} {Human: ENSG00000215217, C5orf49, chromosome 5 open reading frame 49, [RH, Score=97.4, Expect=9e-26]} {Mouse: ENSMUSG00000021534, 1700001L19Rik, RIKEN cDNA 1700001L19 gene, [RH, Score=103, Expect=5e-28]} {Smed: dd_Smed_v6_6211_0_1, dd_Smed_v6_6211_0_1, [RH, Score=136, Expect=1e-41]} {RNA1509_14600, RNA1509_24973} {RNA1310_49397, RNA1509_14600, RNA1509_24973} {RNA1509_14600, RNA1509_24973, RNA815_23943.1}
11. MligTC455_24034 143 2.98 Mlig455_019757

Neo: -

Age: logFC(26M/2M)=0.955

 DSCAML1 0.958 - - 0.958 - - - Mlig455_019757 {REF} {Length: 4868} {Pfam: Fibronectin type III domain [PF00041.23, score=129.6]; Immunoglobulin domain [PF13927.8, score=41.2]; Immunoglobulin I-set domain [PF07679.18, score=35.7]; Immunoglobulin domain [PF13895.8, score=30.3]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=28.8]} {Human: ENSG00000177103, DSCAML1, DS cell adhesion molecule like 1, [Score=119, Expect=3e-26]} {Mouse: ENSMUSG00000032087, Dscaml1, DS cell adhesion molecule like 1, [Score=119, Expect=2e-26]} {Dmel: FBgn0263219, Dscam4, Down syndrome cell adhesion molecule 4, [Score=151, Expect=2e-36]} {Celegans: WBGene00004371, rig-4, Protein sidekick homolog, [Score=79.3, Expect=2e-14]} {Smed: dd_Smed_v6_3024_0_2, dd_Smed_v6_3024_0_2, [Score=184, Expect=9e-47]} {RNA1509_9070} {RNA1310_454.1} {RNA815_227}
12. MligTC455_28586 32 0.66 Mlig455_032084

Neo: -

Age: Up-Down-Down

 0.953 - - 0.953 - - - Mlig455_032084 {REF} {Length: 7595} {RNA1509_42521, RNA1509_44223, RNA1509_46209} {RNA1310_31499, RNA1509_42521, RNA1509_46209} {RNA1509_42521, RNA1509_46209, RNA815_19070}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA