M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29158

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29158 113 2.35 Mlig455_070229

Neo: -

Age: -

 Mlig455_070229 {REF} {Length: 3511} {tRNA: Ile(GAT), score=81.2} {RNA1509_34060} {RNA1310_43061} {RNA815_5301.1}

Cumulative graph for MligTC455_29158

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.745 2.04 0.99960 1.00000
RegionR2 2.424 2.04 0.06565 0.31062
RegionR3 -0.387 2.04 0.86703 1.00000
RegionR4 2.207 2.04 0.06680 0.23448
RegionR5 1.09 2.04 0.34908 0.69844
RegionR6 -0.11 2.04 0.79350 1.00000
RegionR7 -1.577 2.04 0.98799 1.00000
RegionR8 -1.9 2.04 0.99977 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.479 2.04 0.42290 1.00000
RegenerationR2 0.239 2.04 0.73987 0.96975
RegenerationR3 2.039 2.04 0.07597 0.45806
RegenerationR4 0.648 2.04 0.42226 0.82647
RegenerationR5 1.216 2.04 0.12606 0.52981
RegenerationR6 2.638 2.04 0.01229 0.13627
RegenerationBL 3.652 2.04 0.02516 0.17465
RegenerationTP 4.549 2.04 0.03006 0.29136


Genes with expression patterns similar to MligTC455_29158

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29158 113 2.35 Mlig455_070229

Neo: -

Age: -

 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_070229 {REF} {Length: 3511} {tRNA: Ile(GAT), score=81.2} {RNA1509_34060} {RNA1310_43061} {RNA815_5301.1}
2. MligTC455_49957 119 2.47 Mlig455_005610, Mlig455_014448

Neo: -

Age: -

 1.8 0.971 - - 0.829 - -

Mlig455_005610 {REF} {Length: 1455} {Smed: dd_Smed_v6_32483_0_1, dd_Smed_v6_32483_0_1, [Score=66.2, Expect=4e-13]} {RNA1310_45206} {RNA815_28788}

Mlig455_014448 {REF} {Length: 1455} {Smed: dd_Smed_v6_32483_0_1, dd_Smed_v6_32483_0_1, [Score=63.2, Expect=6e-12]} {RNA1310_45206} {RNA815_28788}
3. MligTC455_50253 44 0.92 Mlig455_031495

Neo: -

Age: -

 GABRB2 1.756 0.952 - - 0.804 - - Mlig455_031495 {REF} {Length: 2129} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=58.3]} {Human: ENSG00000145864, GABRB2, gamma-aminobutyric acid type A receptor beta2 subunit, [Score=71.2, Expect=6e-14]} {Mouse: ENSMUSG00000007653, Gabrb2, gamma-aminobutyric acid (GABA) A receptor, subunit beta 2, [Score=67.8, Expect=1e-12]; ENSMUSG00000029212, Gabrb1, gamma-aminobutyric acid (GABA) A receptor, subunit beta 1, [Score=67.4, Expect=1e-12]} {Dmel: FBgn0024963, GluClalpha, [Score=54.3, Expect=3e-08]} {Celegans: WBGene00001594, glc-4, Glutamate-gated ChLoride channel, [Score=66.6, Expect=2e-12]} {Smed: dd_Smed_v6_15331_0_1, dd_Smed_v6_15331_0_1, [Score=70.1, Expect=9e-14]} {RNA1310_46931} {RNA815_25428}
4. MligTC455_53150 224 4.67 Mlig455_036588

Neo: Int S/G2/M

Age: -

 1.749 - - 0.789 - - 0.960 Mlig455_036588 {REF} {Length: 1437} {RNA1509_20954} {RNA1310_9776.1} {RNA815_6133.1}
5. MligTC455_16974 15 0.32 Mlig455_052824

Neo: -

Age: -

 1.71 0.952 - - 0.758 - - Mlig455_052824 {REF} {Length: 306} {NoTransDecoderORF} {RNA1310_65069} {RNA815_35708.2}
6. MligTC455_12183 53 1.11 Mlig455_004166, Mlig455_004190

Neo: -

Age: -

Region-enriched R2: 4.930/0.01881

 1.683 0.966 - - 0.717 - -

Mlig455_004166 {REF} {Length: 2818} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=57.4]; Serpentine type 7TM GPCR chemoreceptor Srbc [PF10316.11, score=29.1]} {Celegans: WBGene00019019, frpr-10, FMRFamide Peptide Receptor family, [Score=55.5, Expect=1e-08]} {Smed: dd_Smed_v6_70862_0_1, dd_Smed_v6_70862_0_1, [Score=60.8, Expect=8e-12]} {RNA1310_64973} {RNA815_58453}

Mlig455_004190 {REF} {Length: 2742} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=56.7]; Serpentine type 7TM GPCR chemoreceptor Srbc [PF10316.11, score=28.6]} {Celegans: WBGene00019019, frpr-10, FMRFamide Peptide Receptor family, [Score=56.2, Expect=1e-08]} {Smed: dd_Smed_v6_70862_0_1, dd_Smed_v6_70862_0_1, [Score=60.8, Expect=1e-11]} {RNA1310_62602} {RNA815_58453}
7. MligTC455_42485 159 3.31 Mlig455_046457

Neo: -

Age: -

 1.669 0.951 - - 0.718 - - Mlig455_046457 {REF} {Length: 846} {RNA1310_40237.1} {RNA815_18246}
8. MligTC455_42040 180 3.76 Mlig455_014679

Neo: -

Age: -

Region-enriched R5: 2.283/0.03075

 PRKX 0.987 - - - 0.987 - - Mlig455_014679 {REF} {Length: 2533} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=230.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=121.5]; Kinase-like [PF14531.8, score=33.0]} {Human: ENSG00000183943, PRKX, protein kinase X-linked, [RH, Score=405, Expect=3e-141]} {Mouse: ENSMUSG00000035725, Prkx, protein kinase, X-linked, [RH, Score=406, Expect=8e-142]} {Dmel: FBgn0000489, Pka-C3, Protein kinase, cAMP-dependent, catalytic subunit 3, [RH, Score=421, Expect=3e-144]} {Celegans: WBGene00018569, F47F2.1, cAMP-dependent protein kinase, catalytic subunit-like, [RH, Score=341, Expect=1e-115]} {Smed: dd_Smed_v6_3838_0_1, dd_Smed_v6_3838_0_1, [RH, Score=491, Expect=8e-176]} {RNA1509_34757, RNA1509_48852} {RNA1310_25898, RNA1509_34757, RNA1509_48852} {RNA1509_34757, RNA1509_48852, RNA815_5443.2}
9. MligTC455_40152 71 1.48 Mlig455_044652

Neo: -

Age: -

 CALML3 0.975 0.975 - - - - - Mlig455_044652 {REF} {Length: 973} {Pfam: EF hand [PF00036.34, score=85.2]; EF-hand domain pair [PF13499.8, score=84.3]; EF-hand domain [PF13405.8, score=70.9]; EF-hand domain pair [PF13833.8, score=61.0]; EF hand [PF13202.8, score=51.9]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=36.6]; EF-hand domain [PF14658.8, score=21.5]} {Human: ENSG00000178363, CALML3, calmodulin like 3, [Score=94.0, Expect=2e-24]} {Mouse: ENSMUSG00000033765, Calm4, calmodulin 4, [Score=86.3, Expect=1e-21]} {Dmel: FBgn0033238, azot, ahuizotl, [Score=76.3, Expect=7e-18]} {Celegans: WBGene00006583, tnc-2, Troponin C, isoform 2, [Score=63.5, Expect=4e-13]} {Smed: dd_Smed_v6_11942_0_1, dd_Smed_v6_11942_0_1, [Score=96.3, Expect=1e-25]} {RNA1310_41156} {RNA815_20058}
10. MligTC455_30839 19 0.39 Mlig455_027444

Neo: -

Age: -

 0.967 0.967 - - - - - Mlig455_027444 {REF} {Length: 516} {NoTransDecoderORF} {RNA1310_123335}
11. MligTC455_41279 31 0.64 Mlig455_026767

Neo: -

Age: Down-Up-Down

Region-enriched R2: 7.794/0.03546
Region-enriched R3: 5.635/0.00727
Region-enriched R5: 3.415/0.03614

 RCVRN 0.965 0.965 - - - - - Mlig455_026767 {REF} {Length: 1327} {Pfam: EF hand [PF00036.34, score=40.2]; EF-hand domain [PF13405.8, score=37.2]; EF-hand domain pair [PF13499.8, score=36.6]; EF hand [PF13202.8, score=23.2]} {Human: ENSG00000109047, RCVRN, recoverin, [Score=51.2, Expect=2e-07]} {Mouse: ENSMUSG00000020907, Rcvrn, recoverin, [Score=48.5, Expect=1e-06]} {Smed: dd_Smed_v6_5266_0_1, dd_Smed_v6_5266_0_1, [Score=47.4, Expect=1e-06]} {RNA1310_48929} {RNA815_16789}
12. MligTC455_15022 16 0.33 Mlig455_040949

Neo: -

Age: -

 PRKAR2B 0.964 0.964 - - - - - Mlig455_040949 {REF} {Length: 1526} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=128.5]} {Human: ENSG00000005249, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=191, Expect=3e-57]; ENSG00000284096, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=191, Expect=3e-57]; ENSG00000114302, PRKAR2A, protein kinase cAMP-dependent type II regulatory subunit alpha, [Score=190, Expect=5e-57]} {Mouse: ENSMUSG00000002997, Prkar2b, protein kinase, cAMP dependent regulatory, type II beta, [Score=189, Expect=1e-56]; ENSMUSG00000032601, Prkar2a, protein kinase, cAMP dependent regulatory, type II alpha, [Score=188, Expect=2e-56]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=217, Expect=5e-68]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=130, Expect=3e-35]} {Smed: dd_Smed_v6_2902_0_1, dd_Smed_v6_2902_0_1, [Score=187, Expect=8e-57]} {RNA1310_91044} {RNA815_60658}
13. MligTC455_28455 35 0.74 Mlig455_035827

Neo: -

Age: -

 ERG 0.963 0.963 - - - - - Mlig455_035827 {REF} {Length: 3020} {Pfam: Ets-domain [PF00178.24, score=117.6]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=20.6]} {Human: ENSG00000157554, ERG, ERG, ETS transcription factor, [Score=192, Expect=1e-56]; ENSG00000151702, FLI1, Fli-1 proto-oncogene, ETS transcription factor, [Score=189, Expect=7e-58]} {Mouse: ENSMUSG00000040732, Erg, ETS transcription factor, [Score=192, Expect=7e-57]; ENSMUSG00000016087, Fli1, Friend leukemia integration 1, [Score=189, Expect=8e-56]} {Dmel: FBgn0005658, Ets65A, Ets at 65A, [Score=187, Expect=3e-57]} {Celegans: WBGene00020368, ast-1, Axon STeering defect, [RH, Score=188, Expect=2e-56]} {Smed: dd_Smed_v6_11113_0_1, dd_Smed_v6_11113_0_1, [Score=176, Expect=8e-52]} {RNA1509_45348} {RNA1310_139406} {RNA815_32211}
14. MligTC455_42650 33 0.69 Mlig455_027379

Neo: -

Age: -

 0.957 0.957 - - - - - Mlig455_027379 {REF} {Length: 661} {RNA1310_47424} {RNA815_44231}
15. MligTC455_23600 9 0.19 Mlig455_039858

Neo: -

Age: -

 NKX2-4 0.956 0.956 - - - - - Mlig455_039858 {REF} {Length: 4395} {Pfam: Homeodomain [PF00046.31, score=70.7]} {Human: ENSG00000125816, NKX2-4, NK2 homeobox 4, [Score=126, Expect=2e-32]; ENSG00000136352, NKX2-1, NK2 homeobox 1, [Score=125, Expect=5e-32]} {Mouse: ENSMUSG00000054160, Nkx2-4, NK2 homeobox 4, [Score=127, Expect=6e-33]; ENSMUSG00000001496, Nkx2-1, NK2 homeobox 1, [Score=125, Expect=5e-32]} {Dmel: FBgn0028993, scro, scarecrow, [Score=159, Expect=6e-44]} {Celegans: WBGene00000447, ceh-24, Homeobox protein ceh-24, [Score=124, Expect=2e-32]} {Smed: dd_Smed_v6_6729_0_1, dd_Smed_v6_6729_0_1, [Score=172, Expect=5e-50]} {RNA1310_77830} {RNA815_63657}
16. MligTC455_11497 60 1.24 Mlig455_038567

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_038567 {REF} {Length: 443} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_23145} {RNA815_41033.2}
17. MligTC455_52593 109 2.26 Mlig455_028322

Neo: -

Age: Down-Up-Down

 DLG5 0.954 - - - 0.954 - - Mlig455_028322 {REF} {Length: 3032} {Pfam: PDZ domain [PF17820.3, score=38.4]; PDZ domain [PF00595.26, score=36.0]; PDZ domain [PF13180.8, score=19.8]} {Human: ENSG00000151208, DLG5, discs large MAGUK scaffold protein 5, [Score=60.8, Expect=6e-09]; ENSG00000274429, DLG5, discs large MAGUK scaffold protein 5, [Score=60.8, Expect=6e-09]} {Mouse: ENSMUSG00000021782, Dlg5, discs large MAGUK scaffold protein 5, [Score=62.0, Expect=2e-09]} {RNA1310_22171} {RNA815_9664}
18. MligTC455_46712 29 0.6 Mlig455_034008

Neo: -

Age: -

 0.953 0.953 - - - - - Mlig455_034008 {REF} {Length: 413} {RNA1509_3272} {RNA1310_44997} {RNA815_30824}
19. MligTC455_46720 10 0.21 Mlig455_053856

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.036

 NPR1 0.953 0.953 - - - - - Mlig455_053856 {REF} {Length: 2671} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=99.0]; Nitrate and nitrite sensing [PF08376.12, score=81.9]} {Human: ENSG00000169418, NPR1, natriuretic peptide receptor 1, [Score=154, Expect=2e-38]; ENSG00000159899, NPR2, natriuretic peptide receptor 2, [Score=151, Expect=2e-37]} {Mouse: ENSMUSG00000027931, Npr1, natriuretic peptide receptor 1, [Score=153, Expect=3e-38]; ENSMUSG00000028469, Npr2, natriuretic peptide receptor 2, [Score=151, Expect=2e-38]; ENSMUSG00000055523, Gucy2g, guanylate cyclase 2g, [Score=150, Expect=3e-37]; ENSMUSG00000020890, Gucy2e, guanylate cyclase 2e, [Score=149, Expect=5e-37]} {Dmel: FBgn0053958, CG33958, [Score=211, Expect=1e-58]} {Celegans: WBGene00001547, gcy-22, Receptor-type guanylate cyclase gcy-22, [Score=152, Expect=4e-38]} {Smed: dd_Smed_v6_9453_0_1, dd_Smed_v6_9453_0_1, [Score=158, Expect=4e-40]} {RNA1310_55195}
20. MligTC455_46721 8 0.16 Mlig455_053871

Neo: -

Age: -

 NPR1 0.952 0.952 - - - - - Mlig455_053871 {REF} {Length: 2774} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=100.4]; Nitrate and nitrite sensing [PF08376.12, score=82.7]} {Human: ENSG00000169418, NPR1, natriuretic peptide receptor 1, [Score=156, Expect=5e-39]; ENSG00000159899, NPR2, natriuretic peptide receptor 2, [Score=152, Expect=7e-38]} {Mouse: ENSMUSG00000027931, Npr1, natriuretic peptide receptor 1, [Score=155, Expect=7e-39]; ENSMUSG00000028469, Npr2, natriuretic peptide receptor 2, [Score=152, Expect=9e-39]; ENSMUSG00000020890, Gucy2e, guanylate cyclase 2e, [Score=151, Expect=1e-37]; ENSMUSG00000055523, Gucy2g, guanylate cyclase 2g, [Score=149, Expect=5e-37]} {Dmel: FBgn0053958, CG33958, [Score=212, Expect=2e-59]} {Celegans: WBGene00001547, gcy-22, Receptor-type guanylate cyclase gcy-22, [Score=154, Expect=9e-39]} {Smed: dd_Smed_v6_9453_0_1, dd_Smed_v6_9453_0_1, [Score=159, Expect=2e-40]} {RNA1310_55195}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA