M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29206

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29206 71 1.47 Mlig455_050219

Neo: -

Age: Down-Down-Up

 Mlig455_050219 {REF} {Length: 2099} {Pfam: Solute carrier family 3 member 2 N-terminus [PF16028.7, score=74.2]; Alpha amylase, catalytic domain [PF00128.26, score=25.2]} {Dmel: FBgn0037533, CD98hc, CD98 heavy chain, [Score=64.3, Expect=2e-10]} {Celegans: WBGene00000224, atgp-1, Amino acid Transporter GlycoProtein subunit, [Score=104, Expect=4e-23]} {Smed: dd_Smed_v6_2113_0_1, dd_Smed_v6_2113_0_1, [Score=133, Expect=1e-32]} {RNA1509_8670} {RNA1310_5590.2} {RNA815_9554}

Cumulative graph for MligTC455_29206

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.392 1.71 0.99976 1.00000
RegionR2 0.865 1.71 0.51261 0.88959
RegionR3 0.68 1.71 0.51851 1.00000
RegionR4 0.945 1.71 0.49265 0.81928
RegionR5 0.294 1.71 0.64758 0.99953
RegionR6 -2.635 1.71 0.99590 1.00000
RegionR7 3.268 1.71 0.01509 0.22205
RegionR8 -3.026 1.71 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.287 1.71 0.99983 1.00000
RegenerationR2 0.134 1.71 0.88862 1.00000
RegenerationR3 1.349 1.71 0.23233 0.66688
RegenerationR4 0.789 1.71 0.52509 0.88187
RegenerationR5 0.453 1.71 0.68474 0.94535
RegenerationR6 2.292 1.71 0.16250 0.49165
RegenerationBL 2.781 1.71 0.08792 0.34754
RegenerationTP 0.971 1.71 0.62437 0.97434


Genes with expression patterns similar to MligTC455_29206

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29206 71 1.47 Mlig455_050219

Neo: -

Age: Down-Down-Up

 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_050219 {REF} {Length: 2099} {Pfam: Solute carrier family 3 member 2 N-terminus [PF16028.7, score=74.2]; Alpha amylase, catalytic domain [PF00128.26, score=25.2]} {Dmel: FBgn0037533, CD98hc, CD98 heavy chain, [Score=64.3, Expect=2e-10]} {Celegans: WBGene00000224, atgp-1, Amino acid Transporter GlycoProtein subunit, [Score=104, Expect=4e-23]} {Smed: dd_Smed_v6_2113_0_1, dd_Smed_v6_2113_0_1, [Score=133, Expect=1e-32]} {RNA1509_8670} {RNA1310_5590.2} {RNA815_9554}
2. MligTC455_39013 53 1.1 Mlig455_030082

Neo: -

Age: Up-Down-Down

 PLCB1 1.656 - 0.704 - - - 0.952 Mlig455_030082 {REF} {Length: 5740} {Pfam: Phosphatidylinositol-specific phospholipase C, X domain [PF00388.21, score=199.2]; Phosphatidylinositol-specific phospholipase C, Y domain [PF00387.21, score=124.4]; PH domain [PF17787.3, score=120.6]; Phosphoinositide-specific phospholipase C, efhand-like [PF09279.13, score=33.9]} {Human: ENSG00000182621, PLCB1, phospholipase C beta 1, [RH, Score=826, Expect=0.0]; ENSG00000149782, PLCB3, phospholipase C beta 3, [RH, Score=824, Expect=0.0]} {Mouse: ENSMUSG00000051177, Plcb1, phospholipase C, beta 1, [RH, Score=826, Expect=0.0]; ENSMUSG00000024960, Plcb3, phospholipase C, beta 3, [RH, Score=813, Expect=0.0]} {Dmel: FBgn0262738, norpA, no receptor potential A, [Score=670, Expect=0.0]} {Celegans: WBGene00001177, egl-8, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8, [Score=680, Expect=0.0]} {Smed: dd_Smed_v6_3221_0_1, dd_Smed_v6_3221_0_1, [Score=724, Expect=0.0]} {RNA1509_47106} {RNA1310_7555, RNA1509_47106} {RNA1509_47106, RNA815_2033}
3. MligTC455_11766 201 4.18 Mlig455_048732

Neo: -

Age: -

Region-enriched R3: 3.689/0.00006

 1.653 - - - 0.703 - 0.950 Mlig455_048732 {REF} {Length: 376} {NoTransDecoderORF} {RNA1310_75754} {RNA815_50709.2}
4. MligTC455_09818 17 0.35 Mlig455_044853

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.929

 OSR2 0.958 - - - - - 0.958 Mlig455_044853 {REF} {Length: 2319} {Pfam: Zinc-finger double domain [PF13465.8, score=48.4]; Zinc finger, C2H2 type [PF00096.28, score=43.3]; C2H2-type zinc finger [PF13894.8, score=31.9]; C2H2-type zinc finger [PF13912.8, score=19.6]} {Human: ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [Score=141, Expect=1e-40]; ENSG00000143867, OSR1, odd-skipped related transciption factor 1, [Score=140, Expect=2e-40]} {Mouse: ENSMUSG00000022330, Osr2, odd-skipped related 2, [Score=141, Expect=1e-40]; ENSMUSG00000048387, Osr1, odd-skipped related transcription factor 1, [Score=140, Expect=1e-40]} {Dmel: FBgn0004892, sob, sister of odd and bowl, [Score=142, Expect=3e-39]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [Score=150, Expect=8e-45]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [Score=151, Expect=7e-45]} {RNA1509_28642} {RNA1310_40286} {RNA815_48894}
5. MligTC455_52453 127 2.65 Mlig455_034004, Mlig455_060386

Neo: -

Age: -

Region-enriched R3: 3.580/0.00648

 0.953 - - - - - 0.953

Mlig455_034004 {REF} {Length: 453} {NoTransDecoderORF} {RNA1509_42969} {RNA1310_78537} {RNA815_37747}

Mlig455_060386 {REF} {Length: 384} {RNA1509_24113} {RNA1310_4423} {RNA815_37747}
6. MligTC455_36748 489 10.18 Mlig455_004121, Mlig455_060446, Mlig455_060486

Neo: -

Age: -

Region-enriched R2: 2.833/0.03490

 0.951 - 0.951 - - - -

Mlig455_004121 {REF} {Length: 6454} {RNA1509_18765} {RNA1310_2764.1, RNA1509_18765} {RNA1509_18765, RNA815_21061}

Mlig455_060446 {REF} {Length: 4478} {RNA1509_18765} {RNA1310_2764.1} {RNA815_21061}

Mlig455_060486 {REF} {Length: 4920} {RNA1509_18765, RNA1509_53791} {RNA1310_1351.1, RNA1509_53791} {RNA1509_53791, RNA815_21061}
7. MligTC455_15505 21 0.43 Mlig455_021843, Mlig455_021918

Neo: -

Age: Down-Up-Up

 HPCAL1 0.95 - - - - - 0.950

Mlig455_021843 {REF} {Length: 1111} {Pfam: EF-hand domain pair [PF13499.8, score=85.1]; EF hand [PF00036.34, score=80.2]; EF-hand domain [PF13405.8, score=74.2]; EF hand [PF13202.8, score=64.9]; EF-hand domain pair [PF13833.8, score=59.5]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=25.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=22.2]} {Human: ENSG00000115756, HPCAL1, hippocalcin like 1, [RH, Score=300, Expect=7e-105]; ENSG00000104490, NCALD, neurocalcin delta, [RH, Score=299, Expect=2e-104]; ENSG00000121905, HPCA, hippocalcin, [RH, Score=297, Expect=1e-103]} {Mouse: ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [RH, Score=301, Expect=2e-105]; ENSMUSG00000051359, Ncald, neurocalcin delta, [RH, Score=299, Expect=1e-104]; ENSMUSG00000028785, Hpca, hippocalcin, [RH, Score=297, Expect=7e-104]} {Dmel: FBgn0013303, Nca, Neurocalcin, [RH, Score=310, Expect=4e-109]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [RH, Score=231, Expect=5e-78]} {Smed: dd_Smed_v6_2568_0_1, dd_Smed_v6_2568_0_1, [RH, Score=309, Expect=7e-109]} {RNA1509_47806} {RNA1310_32974} {RNA815_22749}

Mlig455_021918 {REF} {Length: 2560} {Pfam: EF-hand domain pair [PF13499.8, score=85.1]; EF hand [PF00036.34, score=80.2]; EF-hand domain [PF13405.8, score=74.2]; EF hand [PF13202.8, score=64.9]; EF-hand domain pair [PF13833.8, score=59.5]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=25.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=22.2]} {Human: ENSG00000115756, HPCAL1, hippocalcin like 1, [RH, Score=300, Expect=7e-105]; ENSG00000104490, NCALD, neurocalcin delta, [RH, Score=299, Expect=2e-104]; ENSG00000121905, HPCA, hippocalcin, [RH, Score=297, Expect=1e-103]} {Mouse: ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [RH, Score=301, Expect=2e-105]; ENSMUSG00000051359, Ncald, neurocalcin delta, [RH, Score=299, Expect=1e-104]; ENSMUSG00000028785, Hpca, hippocalcin, [RH, Score=297, Expect=7e-104]} {Dmel: FBgn0013303, Nca, Neurocalcin, [RH, Score=310, Expect=4e-109]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [RH, Score=231, Expect=5e-78]} {Smed: dd_Smed_v6_2568_0_1, dd_Smed_v6_2568_0_1, [RH, Score=309, Expect=7e-109]} {RNA1509_47806} {RNA1310_32974, RNA1509_47806} {RNA1509_47806, RNA815_22749}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA