M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29280

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29280 2804 58.42 Mlig455_014837

Neo: -

Age: Down-Down-Up

Region-enriched R4: 1.130/0.04217

 CYP3A5 Mlig455_014837 {REF} {Length: 2326} {Pfam: Cytochrome P450 [PF00067.24, score=340.8]} {Human: ENSG00000106258, CYP3A5, cytochrome P450 family 3 subfamily A member 5, [RH, Score=300, Expect=1e-95]; ENSG00000160870, CYP3A7, cytochrome P450 family 3 subfamily A member 7, [RH, Score=298, Expect=6e-95]; ENSG00000282301, CYP3A7-CYP3A51P, CYP3A7-CYP3A51P readthrough, [RH, Score=297, Expect=3e-94]; ENSG00000160868, CYP3A4, cytochrome P450 family 3 subfamily A member 4, [RH, Score=295, Expect=6e-94]} {Mouse: ENSMUSG00000056035, Cyp3a11, cytochrome P450, family 3, subfamily a, polypeptide 11, [RH, Score=310, Expect=7e-100]; ENSMUSG00000029727, Cyp3a13, cytochrome P450, family 3, subfamily a, polypeptide 13, [RH, Score=309, Expect=2e-99]; ENSMUSG00000075551, Cyp3a41a, cytochrome P450, family 3, subfamily a, polypeptide 41A, [RH, Score=306, Expect=3e-98]; ENSMUSG00000075552, Cyp3a41b, cytochrome P450, family 3, subfamily a, polypeptide 41B, [RH, Score=306, Expect=3e-98]; ENSMUSG00000029630, Cyp3a25, cytochrome P450, family 3, subfamily a, polypeptide 25, [RH, Score=298, Expect=5e-95]; ENSMUSG00000061292, Cyp3a59, cytochrome P450, family 3, subfamily a, polypeptide 59, [RH, Score=298, Expect=3e-95]; ENSMUSG00000038656, Cyp3a16, cytochrome P450, family 3, subfamily a, polypeptide 16, [RH, Score=296, Expect=2e-94]; ENSMUSG00000054417, Cyp3a44, cytochrome P450, family 3, subfamily a, polypeptide 44, [RH, Score=296, Expect=4e-94]} {Dmel: FBgn0033302, Cyp6a14, [RH, Score=254, Expect=2e-78]} {Celegans: WBGene00000372, cyp-13A7, Putative cytochrome P450 CYP13A7, [RH, Score=211, Expect=6e-62]} {Smed: dd_Smed_v6_2257_0_1, dd_Smed_v6_2257_0_1, [RH, Score=342, Expect=5e-112]} {RNA1509_1194, RNA1509_30025} {RNA1310_2351.1, RNA1509_1194, RNA1509_30025} {RNA1509_1194, RNA1509_30025, RNA815_732}

Cumulative graph for MligTC455_29280

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.254 5.992 0.70176 1.00000
RegionR2 -1.445 5.992 0.00227 0.03828
RegionR3 0.358 5.992 0.32159 0.85919
RegionR4 1.13 5.992 0.00605 0.04217
RegionR5 0.788 5.992 0.02056 0.09899
RegionR6 0.668 5.992 0.06246 0.46817
RegionR7 -1.131 5.992 0.02096 0.26952
RegionR8 -0.623 5.992 0.27072 0.89402

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.383 5.992 0.65149 1.00000
RegenerationR2 0.662 5.992 0.14299 0.57402
RegenerationR3 0.155 5.992 0.73115 0.95816
RegenerationR4 -0.133 5.992 0.76922 0.97656
RegenerationR5 0.081 5.992 0.85133 1.00000
RegenerationR6 -0.012 5.992 0.97926 1.00000
RegenerationBL -0.018 5.992 0.97047 1.00000
RegenerationTP 1.061 5.992 0.03609 0.31729


Genes with expression patterns similar to MligTC455_29280

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29280 2804 58.42 Mlig455_014837

Neo: -

Age: Down-Down-Up

Region-enriched R4: 1.130/0.04217

 CYP3A5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_014837 {REF} {Length: 2326} {Pfam: Cytochrome P450 [PF00067.24, score=340.8]} {Human: ENSG00000106258, CYP3A5, cytochrome P450 family 3 subfamily A member 5, [RH, Score=300, Expect=1e-95]; ENSG00000160870, CYP3A7, cytochrome P450 family 3 subfamily A member 7, [RH, Score=298, Expect=6e-95]; ENSG00000282301, CYP3A7-CYP3A51P, CYP3A7-CYP3A51P readthrough, [RH, Score=297, Expect=3e-94]; ENSG00000160868, CYP3A4, cytochrome P450 family 3 subfamily A member 4, [RH, Score=295, Expect=6e-94]} {Mouse: ENSMUSG00000056035, Cyp3a11, cytochrome P450, family 3, subfamily a, polypeptide 11, [RH, Score=310, Expect=7e-100]; ENSMUSG00000029727, Cyp3a13, cytochrome P450, family 3, subfamily a, polypeptide 13, [RH, Score=309, Expect=2e-99]; ENSMUSG00000075551, Cyp3a41a, cytochrome P450, family 3, subfamily a, polypeptide 41A, [RH, Score=306, Expect=3e-98]; ENSMUSG00000075552, Cyp3a41b, cytochrome P450, family 3, subfamily a, polypeptide 41B, [RH, Score=306, Expect=3e-98]; ENSMUSG00000029630, Cyp3a25, cytochrome P450, family 3, subfamily a, polypeptide 25, [RH, Score=298, Expect=5e-95]; ENSMUSG00000061292, Cyp3a59, cytochrome P450, family 3, subfamily a, polypeptide 59, [RH, Score=298, Expect=3e-95]; ENSMUSG00000038656, Cyp3a16, cytochrome P450, family 3, subfamily a, polypeptide 16, [RH, Score=296, Expect=2e-94]; ENSMUSG00000054417, Cyp3a44, cytochrome P450, family 3, subfamily a, polypeptide 44, [RH, Score=296, Expect=4e-94]} {Dmel: FBgn0033302, Cyp6a14, [RH, Score=254, Expect=2e-78]} {Celegans: WBGene00000372, cyp-13A7, Putative cytochrome P450 CYP13A7, [RH, Score=211, Expect=6e-62]} {Smed: dd_Smed_v6_2257_0_1, dd_Smed_v6_2257_0_1, [RH, Score=342, Expect=5e-112]} {RNA1509_1194, RNA1509_30025} {RNA1310_2351.1, RNA1509_1194, RNA1509_30025} {RNA1509_1194, RNA1509_30025, RNA815_732}
2. MligTC455_30934 89 1.86 Mlig455_044573

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.509

 BCHE 0.955 - - - - - 0.955 Mlig455_044573 {REF} {Length: 2858} {Pfam: Carboxylesterase family [PF00135.30, score=252.0]} {Human: ENSG00000114200, BCHE, butyrylcholinesterase, [Score=155, Expect=1e-40]; ENSG00000087085, ACHE, acetylcholinesterase (Cartwright blood group), [Score=155, Expect=7e-41]} {Mouse: ENSMUSG00000023328, Ache, acetylcholinesterase, [Score=156, Expect=3e-41]} {Dmel: FBgn0083975, Nlg4, Neuroligin 4, [Score=123, Expect=2e-29]} {Celegans: WBGene00000035, ace-1, Acetylcholinesterase 1, [Score=123, Expect=9e-30]} {Smed: dd_Smed_v6_4800_0_2, dd_Smed_v6_4800_0_2, [Score=118, Expect=5e-28]} {RNA1509_58431} {RNA1310_12691} {RNA815_28725}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA