M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29616

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29616 1812 37.75 Mlig455_066312

Neo: -

Age: -

 Mlig455_066312 {REF} {Length: 2140} {TRANSSPLICED} {Smed: dd_Smed_v6_2552_0_1, dd_Smed_v6_2552_0_1, [RH, Score=116, Expect=5e-34]} {RNA1509_10121, RNA1509_18400} {RNA1310_39041, RNA1509_10121, RNA1509_18400} {RNA1509_10121, RNA1509_18400, RNA815_12632.1}

Cumulative graph for MligTC455_29616

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.823 5.449 0.26233 0.91172
RegionR2 -0.748 5.449 0.01265 0.11677
RegionR3 0.274 5.449 0.23502 0.77670
RegionR4 0.815 5.449 0.00425 0.03205
RegionR5 0.053 5.449 0.81467 1.00000
RegionR6 0.473 5.449 0.04401 0.39259
RegionR7 -0.017 5.449 0.95500 1.00000
RegionR8 -0.028 5.449 0.93631 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.834 5.449 0.09891 0.81498
RegenerationR2 -0.047 5.449 0.85675 1.00000
RegenerationR3 -0.378 5.449 0.16039 0.59326
RegenerationR4 -0.326 5.449 0.24208 0.69055
RegenerationR5 0.012 5.449 0.96327 1.00000
RegenerationR6 -0.557 5.449 0.04047 0.25180
RegenerationBL 0.169 5.449 0.56630 0.92093
RegenerationTP -0.399 5.449 0.24858 0.69571


Genes with expression patterns similar to MligTC455_29616

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29616 1812 37.75 Mlig455_066312

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_066312 {REF} {Length: 2140} {TRANSSPLICED} {Smed: dd_Smed_v6_2552_0_1, dd_Smed_v6_2552_0_1, [RH, Score=116, Expect=5e-34]} {RNA1509_10121, RNA1509_18400} {RNA1310_39041, RNA1509_10121, RNA1509_18400} {RNA1509_10121, RNA1509_18400, RNA815_12632.1}
2. MligTC455_29615 1889 39.36 Mlig455_043372

Neo: -

Age: -

 4.489 0.967 0.973 - 0.942 0.729 0.878 Mlig455_043372 {REF} {Length: 2207} {TRANSSPLICED} {Smed: dd_Smed_v6_2552_0_1, dd_Smed_v6_2552_0_1, [RH, Score=116, Expect=5e-34]} {RNA1509_14932, RNA1509_24887, RNA1509_47414} {RNA1310_34528.1, RNA1509_14932, RNA1509_24887, RNA1509_47414} {RNA1509_14932, RNA1509_24887, RNA1509_47414, RNA815_12632.1}
3. MligTC455_30219 2171 45.24 Mlig455_024942, Mlig455_036959, Mlig455_051025

Neo: -

Age: Down-Up-Down

 1.879 - - - 0.904 - 0.975

Mlig455_024942 {REF} {Length: 834} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_58464} {RNA1310_7844.1} {RNA815_2198.1}

Mlig455_036959 {REF} {Length: 1398} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=76.9]} {RNA1509_58464} {RNA1310_7844.1} {RNA815_2198.1}

Mlig455_051025 {REF} {Length: 681} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_58464} {RNA1310_34211} {RNA815_2198.1}
4. MligTC455_18984 610 12.7 Mlig455_002868

Neo: Int S/G2/M

Age: -

Regeneration-upregulated BL: 2.175

Regeneration-enriched BL: 2.175

 1.818 - - - - 0.968 0.850 Mlig455_002868 {REF} {Length: 7266} {TRANSSPLICED} {Pfam: beta-propeller of ELYS nucleoporin [PF16687.7, score=74.2]; Nuclear pore complex assembly [PF13934.8, score=57.3]} {Mouse: ENSMUSG00000026491, Ahctf1, AT hook containing transcription factor 1, [RH, Score=150, Expect=2e-35]} {Dmel: FBgn0031052, CG14215, [RH, Score=70.1, Expect=3e-11]} {RNA1509_41709, RNA1509_4237} {RNA1310_389.1, RNA1509_41709} {RNA1509_41709, RNA815_8171.1}
5. MligTC455_42823 4866 101.37 Mlig455_069734

Neo: -

Age: logFC(26M/2M)=0.194

 RAB14 1.714 - - - 0.982 0.732 - Mlig455_069734 {REF} {Length: 2321} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=200.4]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.0]; ADP-ribosylation factor family [PF00025.23, score=48.7]; 50S ribosome-binding GTPase [PF01926.25, score=23.0]; RsgA GTPase [PF03193.18, score=21.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=20.9]} {Human: ENSG00000119396, RAB14, RAB14, member RAS oncogene family, [RH, Score=366, Expect=4e-130]} {Mouse: ENSMUSG00000026878, Rab14, RAB14, member RAS oncogene family, [RH, Score=366, Expect=3e-130]} {Dmel: FBgn0015791, Rab14, [RH, Score=348, Expect=1e-123]} {Celegans: WBGene00004276, rab-14, RAB family, [RH, Score=360, Expect=1e-128]} {Smed: dd_Smed_v6_2241_0_1, dd_Smed_v6_2241_0_1, [RH, Score=348, Expect=8e-124]} {RNA1509_18438, RNA1509_18873, RNA1509_24951, RNA1509_2746, RNA1509_33172, RNA1509_56906} {RNA1310_28933.2, RNA1509_18438, RNA1509_18873, RNA1509_24951, RNA1509_2746, RNA1509_33172, RNA1509_56906} {RNA1509_18438, RNA1509_18873, RNA1509_24951, RNA1509_2746, RNA1509_33172, RNA1509_56906, RNA815_3498.1}
6. MligTC455_41779 1714 35.71 Mlig455_047512

Neo: Neoblast, stringent

Age: Up-Down-Up

Region-enriched R5: 1.190/0.00563

 DKC1 0.955 - - - - 0.955 - Mlig455_047512 {REF} {Length: 2101} {TRANSSPLICED} {Pfam: DKCLD (NUC011) domain [PF08068.14, score=108.8]; TruB family pseudouridylate synthase (N terminal domain) [PF01509.20, score=74.9]; tRNA pseudouridylate synthase B C-terminal domain [PF16198.7, score=60.8]; PUA domain [PF01472.22, score=56.9]} {Human: ENSG00000130826, DKC1, dyskerin pseudouridine synthase 1, [Score=542, Expect=0.0]} {Mouse: ENSMUSG00000031403, Dkc1, dyskeratosis congenita 1, dyskerin, [Score=543, Expect=0.0]} {Dmel: FBgn0259937, Nop60B, Nucleolar protein at 60B, [Score=571, Expect=0.0]} {Celegans: WBGene00010478, K01G5.5, Putative H/ACA ribonucleoprotein complex subunit 4, [Score=514, Expect=0.0]} {Smed: dd_Smed_v6_4087_0_1, dd_Smed_v6_4087_0_1, [Score=440, Expect=7e-153]} {RNA1509_2479} {RNA1310_14344.1} {RNA815_5205}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA