M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29673

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29673 5515 114.89 Mlig455_054482

Neo: -

Age: Up-Down-Down

 Mlig455_054482 {REF} {Length: 3044} {TRANSSPLICED} {RNA1509_12120, RNA1509_177} {RNA1310_3640, RNA1509_12120} {RNA1509_12120, RNA815_360.1}

Cumulative graph for MligTC455_29673

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.04 6.967 0.92575 1.00000
RegionR2 -0.345 6.967 0.12907 0.44575
RegionR3 0.468 6.967 0.00882 0.14110
RegionR4 0.512 6.967 0.02119 0.10636
RegionR5 0.264 6.967 0.12506 0.35623
RegionR6 0.114 6.967 0.53589 1.00000
RegionR7 -0.245 6.967 0.26194 0.88948
RegionR8 -0.808 6.967 0.00375 0.10724

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.472 6.967 0.38810 1.00000
RegenerationR2 -0.085 6.967 0.69333 0.95400
RegenerationR3 -0.268 6.967 0.23395 0.66824
RegenerationR4 -0.245 6.967 0.29934 0.74127
RegenerationR5 -0.014 6.967 0.95076 1.00000
RegenerationR6 -0.076 6.967 0.73667 0.94551
RegenerationBL 0.276 6.967 0.24549 0.60021
RegenerationTP 0.039 6.967 0.88870 1.00000


Genes with expression patterns similar to MligTC455_29673

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29673 5515 114.89 Mlig455_054482

Neo: -

Age: Up-Down-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_054482 {REF} {Length: 3044} {TRANSSPLICED} {RNA1509_12120, RNA1509_177} {RNA1310_3640, RNA1509_12120} {RNA1509_12120, RNA815_360.1}
2. MligTC455_50622 4865 101.35 Mlig455_053962, Mlig455_054032

Neo: -

Age: -

 VMA21 2.55 - 0.743 - - 0.951 0.856

Mlig455_053962 {REF} {Length: 2405} {TRANSSPLICED} {Pfam: VMA21-like domain [PF09446.12, score=58.4]} {Human: ENSG00000160131, VMA21, VMA21, vacuolar ATPase assembly factor, [RH, Score=56.6, Expect=2e-09]} {Mouse: ENSMUSG00000073131, Vma21, VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), [RH, Score=56.6, Expect=1e-09]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=54.7, Expect=1e-09]} {Smed: dd_Smed_v6_2976_0_1, dd_Smed_v6_2976_0_1, [RH, Score=51.6, Expect=1e-08]} {RNA1509_10428, RNA1509_54178, RNA1509_57331} {RNA1310_71354, RNA1509_10428, RNA1509_54178, RNA1509_57331} {RNA1509_10428, RNA1509_54178, RNA1509_57331, RNA815_23204}

Mlig455_054032 {REF} {Length: 1747} {TRANSSPLICED} {Pfam: VMA21-like domain [PF09446.12, score=58.4]} {Human: ENSG00000160131, VMA21, VMA21, vacuolar ATPase assembly factor, [RH, Score=56.6, Expect=2e-09]} {Mouse: ENSMUSG00000073131, Vma21, VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), [RH, Score=56.6, Expect=1e-09]} {Celegans: WBGene00011116, pdcd-2, Vacuolar ATPase assembly integral membrane protein VMA21 homolog, [RH, Score=54.7, Expect=1e-09]} {Smed: dd_Smed_v6_2976_0_1, dd_Smed_v6_2976_0_1, [RH, Score=51.6, Expect=1e-08]} {RNA1509_19151, RNA1509_57331} {RNA1310_76074, RNA1509_19151} {RNA1509_19151, RNA815_37276}
3. MligTC455_36756 2477 51.61 Mlig455_055041, Mlig455_055059

Neo: -

Age: -

 SARS 1.781 0.801 - - - 0.980 -

Mlig455_055041 {REF} {Length: 2390} {Human: ENSG00000031698, SARS, seryl-tRNA synthetase, [Score=84.3, Expect=3e-19]} {Mouse: ENSMUSG00000068739, Sars, seryl-aminoacyl-tRNA synthetase, [Score=85.5, Expect=8e-20]} {Dmel: FBgn0031497, SerRS, Seryl-tRNA synthetase, [Score=87.4, Expect=1e-20]} {Celegans: WBGene00005663, sars-1, Probable serine--tRNA ligase, cytoplasmic, [Score=90.5, Expect=6e-22]} {Smed: dd_Smed_v6_2956_0_1, dd_Smed_v6_2956_0_1, [Score=75.5, Expect=8e-17]} {RNA1509_2990} {RNA1310_45178.1} {RNA815_22173}

Mlig455_055059 {REF} {Length: 3131} {Pfam: tRNA synthetase class II core domain (G, H, P, S and T) [PF00587.27, score=125.4]; Seryl-tRNA synthetase N-terminal domain [PF02403.24, score=65.3]} {Human: ENSG00000031698, SARS, seryl-tRNA synthetase, [RH, Score=577, Expect=0.0]} {Mouse: ENSMUSG00000068739, Sars, seryl-aminoacyl-tRNA synthetase, [RH, Score=587, Expect=0.0]} {Dmel: FBgn0031497, SerRS, Seryl-tRNA synthetase, [RH, Score=578, Expect=0.0]} {Celegans: WBGene00005663, sars-1, Probable serine--tRNA ligase, cytoplasmic, [RH, Score=615, Expect=0.0]} {Smed: dd_Smed_v6_2956_0_1, dd_Smed_v6_2956_0_1, [RH, Score=571, Expect=0.0]} {RNA1509_10512, RNA1509_11700, RNA1509_23621, RNA1509_2990, RNA1509_56294, RNA1509_60051} {RNA1310_8506.2, RNA1509_10512, RNA1509_11700, RNA1509_23621, RNA1509_2990, RNA1509_56294, RNA1509_60051} {RNA1509_10512, RNA1509_11700, RNA1509_23621, RNA1509_2990, RNA1509_56294, RNA1509_60051, RNA815_6019.1}
4. MligTC455_36755 2382 49.62 Mlig455_022512

Neo: Int S/G2/M

Age: -

 SARS 1.718 0.755 - - - 0.963 - Mlig455_022512 {REF} {Length: 3369} {Pfam: tRNA synthetase class II core domain (G, H, P, S and T) [PF00587.27, score=125.4]; Seryl-tRNA synthetase N-terminal domain [PF02403.24, score=65.3]} {Human: ENSG00000031698, SARS, seryl-tRNA synthetase, [RH, Score=577, Expect=0.0]} {Mouse: ENSMUSG00000068739, Sars, seryl-aminoacyl-tRNA synthetase, [RH, Score=587, Expect=0.0]} {Dmel: FBgn0031497, SerRS, Seryl-tRNA synthetase, [RH, Score=578, Expect=0.0]} {Celegans: WBGene00005663, sars-1, Probable serine--tRNA ligase, cytoplasmic, [RH, Score=615, Expect=0.0]} {Smed: dd_Smed_v6_2956_0_1, dd_Smed_v6_2956_0_1, [RH, Score=571, Expect=0.0]} {RNA1509_2990} {RNA1310_8506.2} {RNA815_6019.1}
5. MligTC455_34296 1279 26.64 Mlig455_065115

Neo: -

Age: -

 EIF5B 1.69 - - - - 0.954 0.736 Mlig455_065115 {REF} {Length: 3496} {TRANSSPLICED} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=116.1]; Translation-initiation factor 2 [PF11987.10, score=71.4]; Elongation factor Tu domain 2 [PF03144.27, score=51.3]; Elongation factor Tu domain 4 [PF14578.8, score=46.9]; 50S ribosome-binding GTPase [PF01926.25, score=33.5]; Conserved hypothetical ATP binding protein [PF03029.19, score=24.7]; Cwf15/Cwc15 cell cycle control protein [PF04889.14, score=23.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=19.8]} {Human: ENSG00000158417, EIF5B, eukaryotic translation initiation factor 5B, [RH, Score=840, Expect=0.0]} {Mouse: ENSMUSG00000026083, Eif5b, eukaryotic translation initiation factor 5B, [Score=837, Expect=0.0]} {Dmel: FBgn0026259, eIF5B, eukaryotic translation initiation factor 5B, [RH, Score=808, Expect=0.0]} {Celegans: WBGene00021857, iffb-1, Eukaryotic translation initiation factor eIF5B; Initiation Factor Five B (eIF5B), [RH, Score=770, Expect=0.0]} {Smed: dd_Smed_v6_1274_1_1, dd_Smed_v6_1274_1_1, [RH, Score=673, Expect=0.0]} {RNA1509_5855, RNA1509_7171} {RNA1310_3913.1, RNA1509_5855, RNA1509_7171} {RNA1509_5855, RNA1509_7171, RNA815_1112}
6. MligTC455_17868 396 8.25 Mlig455_000153

Neo: Int S/G2/M

Age: -

 1.658 - - - - 0.950 0.708 Mlig455_000153 {REF} {Length: 1917} {TRANSSPLICED} {RNA1509_51335} {RNA1310_20317} {RNA815_19485}
7. MligTC455_42766 623 12.97 Mlig455_055089, Mlig455_064029

Neo: Int S/G2/M

Age: -

 AHNAK2 0.979 - - - - 0.979 -

Mlig455_055089 {REF} {Length: 6503} {TRANSSPLICED} {Human: ENSG00000185567, AHNAK2, AHNAK nucleoprotein 2, [Score=67.0, Expect=3e-10]} {Mouse: ENSMUSG00000116477, MF597757.2, [Score=55.8, Expect=6e-07]; ENSMUSG00000072812, Ahnak2, AHNAK nucleoprotein 2, [Score=53.1, Expect=4e-06]} {RNA1509_23810, RNA1509_28913, RNA1509_54659} {RNA1310_9986, RNA1509_28913, RNA1509_54659} {RNA1509_28913, RNA1509_54659, RNA815_12447.1}

Mlig455_064029 {REF} {Length: 6122} {TRANSSPLICED} {Mouse: ENSMUSG00000051747, Ttn, titin, [Score=53.1, Expect=4e-06]} {RNA1509_23810, RNA1509_54093} {RNA1310_9986, RNA1509_54093} {RNA1509_54093, RNA815_12447.1}
8. MligTC455_20190 2853 59.45 Mlig455_022622

Neo: -

Age: -

 PPM1A 0.968 - - - - 0.968 - Mlig455_022622 {REF} {Length: 3942} {TRANSSPLICED} {Pfam: Protein phosphatase 2C [PF00481.23, score=269.6]; Protein serine/threonine phosphatase 2C, C-terminal domain [PF07830.15, score=65.1]; Protein phosphatase 2C [PF13672.8, score=19.7]} {Human: ENSG00000100614, PPM1A, protein phosphatase, Mg2+/Mn2+ dependent 1A, [RH, Score=440, Expect=6e-153]; ENSG00000138032, PPM1B, protein phosphatase, Mg2+/Mn2+ dependent 1B, [RH, Score=434, Expect=2e-150]; ENSG00000285542, AC013717.1, novel protein, PPM1B-SLC3A1 readthrough, [RH, Score=431, Expect=9e-151]} {Mouse: ENSMUSG00000061130, Ppm1b, protein phosphatase 1B, magnesium dependent, beta isoform, [RH, Score=438, Expect=4e-152]; ENSMUSG00000021096, Ppm1a, protein phosphatase 1A, magnesium dependent, alpha isoform, [RH, Score=437, Expect=2e-153]} {Dmel: FBgn0086361, alph, alphabet, [RH, Score=399, Expect=2e-138]} {Celegans: WBGene00006460, ppm-1, Protein phosphatase ppm-1, [RH, Score=300, Expect=2e-98]} {Smed: dd_Smed_v6_286_0_1, dd_Smed_v6_286_0_1, [RH, Score=484, Expect=4e-172]} {RNA1509_20749, RNA1509_24196, RNA1509_29066, RNA1509_4052, RNA1509_56338, RNA1509_59138} {RNA1310_2942, RNA1509_20749, RNA1509_24196, RNA1509_29066, RNA1509_4052, RNA1509_56338, RNA1509_59138} {RNA1509_20749, RNA1509_24196, RNA1509_29066, RNA1509_4052, RNA1509_56338, RNA1509_59138, RNA815_4737}
9. MligTC455_21011 30 0.63 Mlig455_043892

Neo: -

Age: -

 KREMEN1 0.964 - - - - 0.964 - Mlig455_043892 {REF} {Length: 1488} {Pfam: WSC domain [PF01822.21, score=102.2]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=53.5, Expect=1e-07]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=66.2, Expect=6e-12]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=56.2, Expect=9e-09]} {RNA1509_22214} {RNA1310_95335} {RNA815_43018}
10. MligTC455_35855 36 0.74 Mlig455_057980

Neo: Irradiation

Age: -

 0.96 - - - - 0.960 - Mlig455_057980 {REF} {Length: 3238} {TRANSSPLICED} {RNA1509_13251} {RNA1310_8663, RNA1509_13251} {RNA1509_13251, RNA815_11077}
11. MligTC455_35856 35 0.72 Mlig455_070752

Neo: -

Age: Up-Down-Down

 0.96 - - - - 0.960 - Mlig455_070752 {REF} {Length: 5912} {TRANSSPLICED} {RNA1509_13251} {RNA1310_4626} {RNA815_11077}
12. MligTC455_27742 216 4.49 Mlig455_020706

Neo: Irradiation

Age: -

Region-enriched R2: 4.070/0.03422
Region-enriched R5: 2.875/0.00106

 TMED3 0.959 - - - - 0.959 - Mlig455_020706 {REF} {Length: 1854} {TRANSSPLICED} {Pfam: emp24/gp25L/p24 family/GOLD [PF01105.26, score=82.1]} {Human: ENSG00000166557, TMED3, transmembrane p24 trafficking protein 3, [Score=75.9, Expect=4e-15]; ENSG00000117500, TMED5, transmembrane p24 trafficking protein 5, [Score=73.9, Expect=2e-14]} {Mouse: ENSMUSG00000063406, Tmed5, transmembrane p24 trafficking protein 5, [Score=74.7, Expect=7e-15]; ENSMUSG00000032353, Tmed3, transmembrane p24 trafficking protein 3, [Score=73.9, Expect=1e-14]} {Dmel: FBgn0051787, CG31787, [Score=73.9, Expect=9e-15]} {Celegans: WBGene00010670, K08E4.6, [Score=79.0, Expect=2e-16]} {Smed: dd_Smed_v6_3127_0_1, dd_Smed_v6_3127_0_1, [Score=84.7, Expect=4e-18]} {RNA1509_20798} {RNA1310_17461} {RNA815_5363}
13. MligTC455_20710 600 12.51 Mlig455_032523

Neo: -

Age: Up-Down-Down

 EPG5 0.958 - - - - 0.958 - Mlig455_032523 {REF} {Length: 10511} {TRANSSPLICED} {Human: ENSG00000152223, EPG5, ectopic P-granules autophagy protein 5 homolog, [Score=278, Expect=1e-76]} {Mouse: ENSMUSG00000039840, Epg5, ectopic P-granules autophagy protein 5 homolog (C. elegans), [Score=271, Expect=2e-74]; ENSMUSG00000116023, Epg5, ectopic P-granules autophagy protein 5 homolog (C. elegans), [Score=271, Expect=2e-74]} {Smed: dd_Smed_v6_3273_0_1, dd_Smed_v6_3273_0_1, [Score=193, Expect=5e-50]} {RNA1509_3973} {RNA1310_276.1} {RNA815_491}
14. MligTC455_03811 137 2.86 Mlig455_059752

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.549

Region-enriched R5: 2.817/0.03538

Regeneration-upregulated BL: 5.746

Regeneration-enriched BL: 5.746

 0.952 - - - - 0.952 - Mlig455_059752 {REF} {Length: 1765} {TRANSSPLICED} {Pfam: Basic region leucine zipper [PF07716.17, score=20.9]} {RNA1509_23883} {RNA1310_27272} {RNA815_26918}
15. MligTC455_36306 451 9.4 Mlig455_007247

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_007247 {REF} {Length: 213} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_27462, RNA1509_32488, RNA1509_42228} {RNA1310_102473.2, RNA1509_27462, RNA1509_32488, RNA1509_42228} {RNA1509_27462, RNA1509_32488, RNA1509_42228, RNA815_62840}
16. MligTC455_36717 35 0.73 Mlig455_059936

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_059936 {REF} {Length: 2335} {RNA1509_30606} {RNA1310_30834}
17. MligTC455_51670 423 8.81 Mlig455_054981

Neo: Int S/G2/M

Age: Down-Up-Up

Region-enriched R5: 1.650/0.04341

 0.95 - - - - 0.950 - Mlig455_054981 {REF} {Length: 2869} {TRANSSPLICED} {Pfam: PEST, proteolytic signal-containing nuclear protein family [PF15473.8, score=59.2]} {RNA1509_55181, RNA1509_7874} {RNA1310_7292.1, RNA1509_55181} {RNA1509_55181, RNA815_7029.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA