Data search


search
Exact
Search

Results for MligTC455_29810

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29810 44 0.91 Mlig455_027614

Neo: -

Age: logFC(26M/2M)=1.625

Mlig455_027614 {REF} {Length: 532} {NoTransDecoderORF} {RNA1509_58257} {RNA1310_20780.1} {RNA815_13375.1}

Cumulative graph for MligTC455_29810

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.737 1.275 1.00000 1.00000
RegionR2 3.387 1.275 0.24752 0.62515
RegionR3 3.132 1.275 0.06540 0.45141
RegionR4 -3.183 1.275 0.99780 1.00000
RegionR5 0.16 1.275 0.83974 1.00000
RegionR6 1.849 1.275 0.34466 0.93117
RegionR7 -0.233 1.275 1.00000 1.00000
RegionR8 0.625 1.275 0.99970 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.317 1.275 0.37748 1.00000
RegenerationR2 0.467 1.275 0.99375 1.00000
RegenerationR3 0.289 1.275 0.93673 1.00000
RegenerationR4 0.42 1.275 0.82192 0.99479
RegenerationR5 -0.336 1.275 0.53120 0.87566
RegenerationR6 0.017 1.275 0.68741 0.91755
RegenerationBL -2.653 1.275 0.98625 1.00000
RegenerationTP 2.585 1.275 0.46283 0.87614


Genes with expression patterns similar to MligTC455_29810

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29810 44 0.91 Mlig455_027614

Neo: -

Age: logFC(26M/2M)=1.625

3 1.000 1.000 - - 1.000 - Mlig455_027614 {REF} {Length: 532} {NoTransDecoderORF} {RNA1509_58257} {RNA1310_20780.1} {RNA815_13375.1}
2. MligTC455_25924 43 0.91 Mlig455_010197

Neo: -

Age: logFC(26M/2M)=-0.512

2.764 0.954 0.984 - - 0.826 - Mlig455_010197 {REF} {Length: 635} {NoTransDecoderORF} {RNA1509_36724} {RNA1310_20647} {RNA815_8771}
3. MligTC455_25923 58 1.21 Mlig455_006702

Neo: -

Age: -

2.691 0.963 0.870 - - 0.858 - Mlig455_006702 {REF} {Length: 1537} {RNA1509_12380} {RNA1310_21840.1} {RNA815_19957}
4. MligTC455_44102 5169 107.69 Mlig455_011991

Neo: -

Age: logFC(26M/2M)=0.278

Region-enriched R3: 1.948/0.00360
Region-enriched R4: 1.688/0.02863

HPGDS 1.693 0.739 0.954 - - - - Mlig455_011991 {REF} {Length: 1746} {Pfam: Glutathione S-transferase, C-terminal domain [PF14497.8, score=43.5]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=42.8]; Glutathione S-transferase, N-terminal domain [PF13417.8, score=22.6]; Glutathione S-transferase, C-terminal domain [PF00043.27, score=20.1]; Glutathione S-transferase, N-terminal domain [PF13409.8, score=19.1]} {Human: ENSG00000163106, HPGDS, hematopoietic prostaglandin D synthase, [Score=67.8, Expect=2e-13]} {Mouse: ENSMUSG00000025934, Gsta3, glutathione S-transferase, alpha 3, [Score=62.4, Expect=1e-11]; ENSMUSG00000032348, Gsta4, glutathione S-transferase, alpha 4, [Score=60.5, Expect=6e-11]; ENSMUSG00000029919, Hpgds, hematopoietic prostaglandin D synthase, [Score=60.5, Expect=5e-11]} {Celegans: WBGene00001756, gst-8, Probable glutathione S-transferase 8, [Score=84.0, Expect=5e-20]} {Smed: dd_Smed_v6_20_0_1, dd_Smed_v6_20_0_1, [Score=115, Expect=4e-32]} {RNA1509_2160, RNA1509_26612, RNA1509_28516, RNA1509_5091, RNA1509_6359} {RNA1310_14959.1, RNA1509_2160, RNA1509_26612, RNA1509_28516, RNA1509_5091, RNA1509_6359} {RNA1509_2160, RNA1509_26612, RNA1509_28516, RNA1509_5091, RNA1509_6359, RNA815_7403}
5. MligTC455_16709 1302 27.12 Mlig455_029518

Neo: -

Age: -

Region-enriched R3: 1.855/0.00908

SLC13A3 0.963 - 0.963 - - - - Mlig455_029518 {REF} {Length: 2726} {Pfam: Sodium:sulfate symporter transmembrane region [PF00939.21, score=302.1]; Citrate transporter [PF03600.18, score=114.3]} {Human: ENSG00000158296, SLC13A3, solute carrier family 13 member 3, [Score=406, Expect=7e-134]} {Mouse: ENSMUSG00000018459, Slc13a3, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3, [Score=384, Expect=3e-125]; ENSMUSG00000029700, Slc13a1, solute carrier family 13 (sodium/sulfate symporters), member 1, [Score=367, Expect=8e-119]; ENSMUSG00000020805, Slc13a5, solute carrier family 13 (sodium-dependent citrate transporter), member 5, [Score=366, Expect=1e-118]; ENSMUSG00000001095, Slc13a2, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, [Score=366, Expect=1e-118]; ENSMUSG00000029843, Slc13a4, solute carrier family 13 (sodium/sulfate symporters), member 4, [Score=365, Expect=5e-118]} {Dmel: FBgn0036816, Indy, I'm not dead yet, [Score=281, Expect=1e-86]} {Celegans: WBGene00003517, nac-1, Sodium-dependent low-affinity dicarboxylate transporter 1, [Score=317, Expect=7e-100]} {Smed: dd_Smed_v6_12964_0_8, dd_Smed_v6_12964_0_8, [Score=360, Expect=6e-117]} {RNA1509_9551} {RNA1310_8761.2} {RNA815_3645}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA