M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30107

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30107 145 3.01 Mlig455_022547

Neo: -

Age: Down-Up-Down

 Mlig455_022547 {REF} {Length: 8679} {TRANSSPLICED} {RNA1509_3501} {RNA1310_384.1, RNA1509_3501} {RNA1509_3501, RNA815_217.1}

Cumulative graph for MligTC455_30107

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.171 2.255 0.39377 1.00000
RegionR2 1.056 2.255 0.18714 0.54084
RegionR3 0.531 2.255 0.40518 0.93236
RegionR4 -0.481 2.255 0.56550 0.88468
RegionR5 -0.831 2.255 0.31687 0.65726
RegionR6 0.054 2.255 0.93343 1.00000
RegionR7 0.768 2.255 0.41226 1.00000
RegionR8 1.075 2.255 0.34841 0.98217

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.502 2.255 0.91913 1.00000
RegenerationR2 -0.216 2.255 0.69578 0.95507
RegenerationR3 0.092 2.255 0.88163 1.00000
RegenerationR4 0.321 2.255 0.62193 0.92129
RegenerationR5 0.637 2.255 0.29441 0.72217
RegenerationR6 0.517 2.255 0.44976 0.77033
RegenerationBL 0.223 2.255 0.79837 1.00000
RegenerationTP 0.013 2.255 0.99021 1.00000


Genes with expression patterns similar to MligTC455_30107

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30107 145 3.01 Mlig455_022547

Neo: -

Age: Down-Up-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_022547 {REF} {Length: 8679} {TRANSSPLICED} {RNA1509_3501} {RNA1310_384.1, RNA1509_3501} {RNA1509_3501, RNA815_217.1}
2. MligTC455_30108 1243 25.89 Mlig455_023221, Mlig455_025483, Mlig455_035874, Mlig455_060689

Neo: -

Age: -

 2.614 0.959 0.792 - - - 0.863

Mlig455_023221 {REF} {Length: 1610} {TRANSSPLICED} {RNA1509_9107} {RNA1310_13804} {RNA815_857.1}

Mlig455_025483 {REF} {Length: 2124} {TRANSSPLICED} {RNA1509_9107} {RNA1310_12191, RNA1509_9107} {RNA1509_9107, RNA815_10451}

Mlig455_035874 {REF} {Length: 1608} {TRANSSPLICED} {RNA1509_9107} {RNA1310_13804} {RNA815_857.1}

Mlig455_060689 {REF} {Length: 1888} {TRANSSPLICED} {RNA1509_9107} {RNA1310_13804} {RNA815_857.1}
3. MligTC455_30118 613 12.77 Mlig455_015882, Mlig455_070728

Neo: -

Age: logFC(26M/2M)=-0.325

 2.601 0.951 0.794 - - - 0.856

Mlig455_015882 {REF} {Length: 1639} {TRANSSPLICED} {RNA1509_9107} {RNA1310_13804} {RNA815_857.1}

Mlig455_070728 {REF} {Length: 2202} {TRANSSPLICED} {RNA1509_9107} {RNA1310_39363} {RNA815_857.1}
4. MligTC455_30110 326 6.78 Mlig455_048850

Neo: -

Age: -

 2.469 0.950 0.798 - - - 0.721 Mlig455_048850 {REF} {Length: 3264} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=63.1]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=46.6, Expect=1e-06]} {RNA1509_9107} {RNA1310_13804} {RNA815_857.1}
5. MligTC455_45397 2373 49.43 Mlig455_031265, Mlig455_031311

Neo: -

Age: logFC(26M/2M)=-0.486

Region-enriched R2: 1.539/0.00242
Region-enriched R3: 1.339/0.00095

 TEX47 0.96 - - - - 0.960 -

Mlig455_031265 {REF} {Length: 1234} {Human: ENSG00000164645, TEX47, testis expressed 47, [RH, Score=80.5, Expect=3e-17]} {Mouse: ENSMUSG00000040514, Tex47, testis expressed 47, [RH, Score=72.0, Expect=2e-14]} {Smed: dd_Smed_v6_11000_0_1, dd_Smed_v6_11000_0_1, [RH, Score=151, Expect=9e-45]} {RNA1509_19625, RNA1509_5428} {RNA1310_27895, RNA1509_19625, RNA1509_5428} {RNA1509_19625, RNA1509_5428, RNA815_12847}

Mlig455_031311 {REF} {Length: 1268} {Human: ENSG00000164645, TEX47, testis expressed 47, [RH, Score=79.7, Expect=5e-17]} {Mouse: ENSMUSG00000040514, Tex47, testis expressed 47, [RH, Score=71.6, Expect=2e-14]} {Smed: dd_Smed_v6_11000_0_1, dd_Smed_v6_11000_0_1, [RH, Score=151, Expect=1e-44]} {RNA1509_19625} {RNA1310_27895} {RNA815_12847}
6. MligTC455_52691 948 19.76 Mlig455_055895

Neo: -

Age: Down-Up-Down

 0.96 - - - - - 0.960 Mlig455_055895 {REF} {Length: 791} {TRANSSPLICED} {RNA1509_45262} {RNA1310_35478} {RNA815_18234.2}
7. MligTC455_26237 5570 116.04 Mlig455_005447

Neo: -

Age: Up-Down-Down

Region-enriched R4: 1.435/0.00000

 ATP5MC2 0.957 - - - 0.957 - - Mlig455_005447 {REF} {Length: 651} {TRANSSPLICED} {Pfam: ATP synthase subunit C [PF00137.23, score=41.8]} {Human: ENSG00000135390, ATP5MC2, ATP synthase membrane subunit c locus 2, [RH, Score=151, Expect=1e-47]; ENSG00000159199, ATP5MC1, ATP synthase membrane subunit c locus 1, [RH, Score=150, Expect=8e-48]; ENSG00000154518, ATP5MC3, ATP synthase membrane subunit c locus 3, [RH, Score=145, Expect=2e-45]} {Mouse: ENSMUSG00000006057, Atp5g1, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9), [RH, Score=156, Expect=4e-50]; ENSMUSG00000062683, Atp5g2, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9), [RH, Score=149, Expect=5e-47]} {Dmel: FBgn0039830, ATPsynC, ATP synthase, subunit C, [RH, Score=147, Expect=8e-47]} {Celegans: WBGene00022336, Y82E9BR.3, ATP synthase lipid-binding protein, mitochondrial, [RH, Score=150, Expect=3e-48]} {Smed: dd_Smed_v6_401_0_1, dd_Smed_v6_401_0_1, [RH, Score=115, Expect=2e-34]} {RNA1509_45717} {RNA1310_25694} {RNA815_23090.1}
8. MligTC455_33665 566 11.79 Mlig455_018419, Mlig455_018421, Mlig455_019322, Mlig455_048837

Neo: -

Age: logFC(26M/2M)=-1.062

Region-enriched R2: 2.245/0.00138

 0.954 0.954 - - - - -

Mlig455_018419 {REF} {Length: 629} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_23746} {RNA815_16073}

Mlig455_018421 {REF} {Length: 1329} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25254} {RNA1310_31113} {RNA815_16073}

Mlig455_019322 {REF} {Length: 6075} {RNA1509_38197, RNA1509_56039} {RNA1310_15214.1, RNA1509_56039} {RNA1509_56039, RNA815_15612}

Mlig455_048837 {REF} {Length: 2037} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_15574, RNA1509_25254, RNA1509_35176} {RNA1310_31113, RNA1509_15574, RNA1509_25254, RNA1509_35176} {RNA1509_15574, RNA1509_25254, RNA1509_35176, RNA815_16073}
9. MligTC455_21525 290 6.04 Mlig455_052729

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.421

Region-enriched R4: 2.955/0.03057

Regeneration-downregulated BL: -4.129

Regeneration-depleted BL: -4.129

 SLC26A4 0.952 0.952 - - - - - Mlig455_052729 {REF} {Length: 5485} {Pfam: Sulfate permease family [PF00916.22, score=271.4]} {Human: ENSG00000091137, SLC26A4, solute carrier family 26 member 4, [Score=248, Expect=4e-72]} {Mouse: ENSMUSG00000020651, Slc26a4, solute carrier family 26, member 4, [Score=242, Expect=5e-70]; ENSMUSG00000034320, Slc26a2, solute carrier family 26 (sulfate transporter), member 2, [Score=236, Expect=3e-68]} {Dmel: FBgn0036770, Prestin, [Score=193, Expect=1e-52]} {Celegans: WBGene00012259, sulp-7, Anion transporter SULP-7c; SULfate Permease family, [Score=196, Expect=7e-55]} {Smed: dd_Smed_v6_4250_0_1, dd_Smed_v6_4250_0_1, [Score=248, Expect=1e-72]} {RNA1509_26971, RNA1509_42478} {RNA1310_9220.2, RNA1509_26971, RNA1509_42478} {RNA1509_26971, RNA1509_42478, RNA815_1075.1}
10. MligTC455_50155 542 11.29 Mlig455_010493

Neo: -

Age: Down-Down-Up

Regeneration-upregulated BL: 2.962

Regeneration-enriched BL: 2.962

 BEST2 0.95 0.950 - - - - - Mlig455_010493 {REF} {Length: 2707} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=157.0]} {Human: ENSG00000039987, BEST2, bestrophin 2, [Score=102, Expect=2e-22]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=103, Expect=6e-23]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=178, Expect=6e-48]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=146, Expect=2e-37]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=235, Expect=7e-71]} {RNA1509_40942} {RNA1310_14129.1} {RNA815_5240}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA