M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30261

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30261 475 9.90 Mlig455_007566

Neo: -

Age: -

 MYLIP Mlig455_007566 {REF} {Length: 3429} {Pfam: FERM N-terminal domain [PF09379.12, score=53.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.8]; Prokaryotic RING finger family 4 [PF14447.8, score=33.2]; FERM C-terminal PH-like domain [PF09380.12, score=27.7]; FERM central domain [PF00373.20, score=25.2]} {Human: ENSG00000007944, MYLIP, myosin regulatory light chain interacting protein, [RH, Score=324, Expect=3e-105]} {Mouse: ENSMUSG00000038175, Mylip, myosin regulatory light chain interacting protein, [RH, Score=317, Expect=6e-103]} {Dmel: FBgn0260866, dnr1, defense repressor 1, [RH, Score=144, Expect=2e-36]} {Celegans: WBGene00001489, frm-2, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=92.4, Expect=1e-19]} {Smed: dd_Smed_v6_5600_0_1, dd_Smed_v6_5600_0_1, [Score=88.2, Expect=4e-18]} {RNA1509_5168} {RNA1310_3655} {RNA815_2773}

Cumulative graph for MligTC455_30261

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.367 3.742 0.32275 0.97242
RegionR2 1.099 3.742 0.04800 0.26013
RegionR3 0.644 3.742 0.13815 0.63509
RegionR4 -0.572 3.742 0.29682 0.60881
RegionR5 0.124 3.742 0.76267 1.00000
RegionR6 -0.056 3.742 0.90457 1.00000
RegionR7 0.394 3.742 0.47959 1.00000
RegionR8 -0.268 3.742 0.73803 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.557 3.742 0.29424 0.99180
RegenerationR2 -0.476 3.742 0.28841 0.73126
RegenerationR3 -0.372 3.742 0.46032 0.83771
RegenerationR4 -0.895 3.742 0.10788 0.50611
RegenerationR5 -0.54 3.742 0.25432 0.68724
RegenerationR6 -0.758 3.742 0.16775 0.49828
RegenerationBL -0.399 3.742 0.54515 0.90314
RegenerationTP 0.322 3.742 0.63202 0.97857


Genes with expression patterns similar to MligTC455_30261

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30261 475 9.9 Mlig455_007566

Neo: -

Age: -

 MYLIP 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_007566 {REF} {Length: 3429} {Pfam: FERM N-terminal domain [PF09379.12, score=53.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.8]; Prokaryotic RING finger family 4 [PF14447.8, score=33.2]; FERM C-terminal PH-like domain [PF09380.12, score=27.7]; FERM central domain [PF00373.20, score=25.2]} {Human: ENSG00000007944, MYLIP, myosin regulatory light chain interacting protein, [RH, Score=324, Expect=3e-105]} {Mouse: ENSMUSG00000038175, Mylip, myosin regulatory light chain interacting protein, [RH, Score=317, Expect=6e-103]} {Dmel: FBgn0260866, dnr1, defense repressor 1, [RH, Score=144, Expect=2e-36]} {Celegans: WBGene00001489, frm-2, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=92.4, Expect=1e-19]} {Smed: dd_Smed_v6_5600_0_1, dd_Smed_v6_5600_0_1, [Score=88.2, Expect=4e-18]} {RNA1509_5168} {RNA1310_3655} {RNA815_2773}
2. MligTC455_30262 810 16.87 Mlig455_030545, Mlig455_070736

Neo: -

Age: logFC(26M/2M)=-0.245

 MYLIP 4.672 0.900 0.921 - 0.965 0.951 0.935

Mlig455_030545 {REF} {Length: 4300} {Pfam: FERM N-terminal domain [PF09379.12, score=53.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.8]; Prokaryotic RING finger family 4 [PF14447.8, score=33.2]; FERM C-terminal PH-like domain [PF09380.12, score=27.8]; FERM central domain [PF00373.20, score=26.9]} {Human: ENSG00000007944, MYLIP, myosin regulatory light chain interacting protein, [RH, Score=325, Expect=1e-105]} {Mouse: ENSMUSG00000038175, Mylip, myosin regulatory light chain interacting protein, [RH, Score=319, Expect=1e-103]} {Dmel: FBgn0260866, dnr1, defense repressor 1, [RH, Score=144, Expect=2e-36]} {Celegans: WBGene00001489, frm-2, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=93.6, Expect=5e-20]} {Smed: dd_Smed_v6_5600_0_1, dd_Smed_v6_5600_0_1, [Score=90.1, Expect=1e-18]} {RNA1509_5168} {RNA1310_3655, RNA1509_5168} {RNA1509_5168, RNA815_2773}

Mlig455_070736 {REF} {Length: 3400} {Pfam: FERM N-terminal domain [PF09379.12, score=53.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=45.8]; Prokaryotic RING finger family 4 [PF14447.8, score=33.2]; FERM C-terminal PH-like domain [PF09380.12, score=27.7]; FERM central domain [PF00373.20, score=25.2]} {Human: ENSG00000007944, MYLIP, myosin regulatory light chain interacting protein, [RH, Score=324, Expect=3e-105]} {Mouse: ENSMUSG00000038175, Mylip, myosin regulatory light chain interacting protein, [RH, Score=317, Expect=6e-103]} {Dmel: FBgn0260866, dnr1, defense repressor 1, [RH, Score=144, Expect=2e-36]} {Celegans: WBGene00001489, frm-2, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=92.4, Expect=1e-19]} {Smed: dd_Smed_v6_5600_0_1, dd_Smed_v6_5600_0_1, [Score=88.2, Expect=4e-18]} {RNA1509_5168} {RNA1310_3655} {RNA815_2773}
3. MligTC455_46082 2016 41.99 Mlig455_032092

Neo: -

Age: Down-Up-Up

 MVP 0.955 - - - - 0.955 - Mlig455_032092 {REF} {Length: 3806} {Pfam: Major Vault Protein repeat domain [PF01505.20, score=216.1]; Shoulder domain [PF11978.10, score=163.9]; Major Vault Protein repeat domain [PF17794.3, score=121.3]; Major Vault Protein Repeat domain [PF17795.3, score=116.0]; Major Vault Protein repeat domain [PF17796.3, score=101.2]} {Human: ENSG00000013364, MVP, major vault protein, [RH, Score=1073, Expect=0.0]} {Mouse: ENSMUSG00000030681, Mvp, major vault protein, [RH, Score=1067, Expect=0.0]} {Smed: dd_Smed_v6_1098_0_1, dd_Smed_v6_1098_0_1, [Score=1073, Expect=0.0]} {RNA1509_12771, RNA1509_6349} {RNA1310_3408.1, RNA1509_12771} {RNA1509_12771, RNA815_968.1}
4. MligTC455_29144 403 8.4 Mlig455_060779

Neo: -

Age: -

 TNFAIP8L3 0.953 - - - 0.953 - - Mlig455_060779 {REF} {Length: 6512} {Pfam: Domain of unknown function (DUF758) [PF05527.13, score=109.4]} {Human: ENSG00000183578, TNFAIP8L3, TNF alpha induced protein 8 like 3, [Score=75.5, Expect=1e-16]} {Mouse: ENSMUSG00000074345, Tnfaip8l3, tumor necrosis factor, alpha-induced protein 8-like 3, [Score=80.5, Expect=9e-19]} {Dmel: FBgn0034894, sigmar, salivary glands marred, [Score=60.8, Expect=2e-11]} {Smed: dd_Smed_v6_2386_0_1, dd_Smed_v6_2386_0_1, [RH, Score=76.6, Expect=9e-18]} {RNA1509_33010} {RNA1310_16485} {RNA815_8440.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA