TomoSeq data search

Data search

Results for MligTC455_30429

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_30429

563

11.73

Mlig455_019230

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.192

GNPDA2

Mlig455_019230 {REF} {Length: 1251} {TRANSSPLICED} {Pfam: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase [PF01182.22, score=62.6]} {Human: ENSG00000163281, GNPDA2, glucosamine-6-phosphate deaminase 2, [RH, Score=399, Expect=7e-141]; ENSG00000113552, GNPDA1, glucosamine-6-phosphate deaminase 1, [RH, Score=396, Expect=2e-139]} {Mouse: ENSMUSG00000052102, Gnpda1, glucosamine-6-phosphate deaminase 1, [RH, Score=398, Expect=2e-140]; ENSMUSG00000029209, Gnpda2, glucosamine-6-phosphate deaminase 2, [RH, Score=396, Expect=5e-140]} {Dmel: FBgn0031717, Oscillin, [RH, Score=401, Expect=3e-142]} {Celegans: WBGene00011399, T03F6.3, Probable glucosamine-6-phosphate isomerase, [RH, Score=357, Expect=5e-125]} {Smed: dd_Smed_v6_5404_0_1, dd_Smed_v6_5404_0_1, [RH, Score=402, Expect=8e-143]} {RNA1509_2572} {RNA1310_10583.1, RNA1509_2572} {RNA1509_2572, RNA815_10914}

Cumulative graph for MligTC455_30429

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.479	3.754	0.61227	1.00000
RegionR2	0.401	3.754	0.42025	0.81199
RegionR3	0.596	3.754	0.10963	0.57631
RegionR4	-1.073	3.754	0.01064	0.06394
RegionR5	0.824	3.754	0.01008	0.05808
RegionR6	0.572	3.754	0.13767	0.66681
RegionR7	-0.871	3.754	0.16909	0.75720
RegionR8	0.03	3.754	0.96518	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.557	3.754	0.65832	1.00000
RegenerationR2	-0.592	3.754	0.16859	0.60732
RegenerationR3	-0.618	3.754	0.15233	0.58187
RegenerationR4	0.098	3.754	0.82020	0.99416
RegenerationR5	-0.943	3.754	0.01178	0.19164
RegenerationR6	-0.505	3.754	0.23867	0.58609
RegenerationBL	0.058	3.754	0.92162	1.00000
RegenerationTP	0.477	3.754	0.46006	0.87403

Genes with expression patterns similar to MligTC455_30429

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_30429	563	11.73	Mlig455_019230	Neo: - Age: Down-Up-Down, logFC(26M/2M)=0.192	GNPDA2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_019230 {REF} {Length: 1251} {TRANSSPLICED} {Pfam: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase [PF01182.22, score=62.6]} {Human: ENSG00000163281, GNPDA2, glucosamine-6-phosphate deaminase 2, [RH, Score=399, Expect=7e-141]; ENSG00000113552, GNPDA1, glucosamine-6-phosphate deaminase 1, [RH, Score=396, Expect=2e-139]} {Mouse: ENSMUSG00000052102, Gnpda1, glucosamine-6-phosphate deaminase 1, [RH, Score=398, Expect=2e-140]; ENSMUSG00000029209, Gnpda2, glucosamine-6-phosphate deaminase 2, [RH, Score=396, Expect=5e-140]} {Dmel: FBgn0031717, Oscillin, [RH, Score=401, Expect=3e-142]} {Celegans: WBGene00011399, T03F6.3, Probable glucosamine-6-phosphate isomerase, [RH, Score=357, Expect=5e-125]} {Smed: dd_Smed_v6_5404_0_1, dd_Smed_v6_5404_0_1, [RH, Score=402, Expect=8e-143]} {RNA1509_2572} {RNA1310_10583.1, RNA1509_2572} {RNA1509_2572, RNA815_10914}
2.	MligTC455_34347	673	14.03	Mlig455_022881	Neo: - Age: -		1.691	0.735	0.956	-	-	-	-	Mlig455_022881 {REF} {Length: 2658} {TRANSSPLICED} {RNA1509_15487, RNA1509_24873, RNA1509_35304, RNA1509_40775, RNA1509_47924, RNA1509_53278, RNA1509_57914} {RNA1310_44954, RNA1509_15487, RNA1509_24873, RNA1509_35304, RNA1509_40775, RNA1509_47924, RNA1509_53278, RNA1509_57914} {RNA1509_15487, RNA1509_24873, RNA1509_35304, RNA1509_40775, RNA1509_47924, RNA1509_53278, RNA1509_57914, RNA815_22875}
3.	MligTC455_44155	114	2.37	Mlig455_058417	Neo: - Age: - Regeneration-enriched R2: 4.998 Regeneration-enriched R5: 4.653		0.962	-	-	-	-	-	0.962	Mlig455_058417 {REF} {Length: 2240} {Pfam: Anaphase-promoting complex subunit 15 [PF15243.8, score=24.9]} {RNA1509_14608} {RNA1310_3106} {RNA815_39818}
4.	MligTC455_16555	592	12.34	Mlig455_001258, Mlig455_059954	Neo: - Age: Up-Down-Up, logFC(26M/2M)=1.369	ALKBH8	0.952	-	-	-	-	-	0.952	Mlig455_001258 {REF} {Length: 2256} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=54.6]; Methyltransferase domain [PF08241.14, score=45.9]; Methyltransferase domain [PF13649.8, score=41.0]; Methyltransferase domain [PF13489.8, score=22.5]; Methyltransferase domain [PF08242.14, score=22.0]; Methionine biosynthesis protein MetW [PF07021.14, score=19.0]; Protein of unknown function (DUF1698) [PF08003.13, score=17.9]} {Human: ENSG00000137760, ALKBH8, alkB homolog 8, tRNA methyltransferase, [RH, Score=343, Expect=2e-110]} {Mouse: ENSMUSG00000025899, Alkbh8, alkB homolog 8, tRNA methyltransferase, [RH, Score=338, Expect=1e-108]} {Dmel: FBgn0034748, CG17807, [RH, Score=345, Expect=4e-112]} {Celegans: WBGene00007581, alkb-8, ALKylated DNA repair protein AlkB homolog, [RH, Score=276, Expect=1e-85]} {Smed: dd_Smed_v6_13891_0_1, dd_Smed_v6_13891_0_1, [RH, Score=289, Expect=1e-90]} {RNA1509_25622} {RNA1310_12313} {RNA815_12063} Mlig455_059954 {REF} {Length: 989} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=54.6]; Methyltransferase domain [PF08241.14, score=45.9]; Methyltransferase domain [PF13649.8, score=41.0]; Methyltransferase domain [PF13489.8, score=22.5]; Methyltransferase domain [PF08242.14, score=22.0]; Methionine biosynthesis protein MetW [PF07021.14, score=19.0]; Protein of unknown function (DUF1698) [PF08003.13, score=17.9]} {Human: ENSG00000137760, ALKBH8, alkB homolog 8, tRNA methyltransferase, [RH, Score=343, Expect=2e-110]} {Mouse: ENSMUSG00000025899, Alkbh8, alkB homolog 8, tRNA methyltransferase, [RH, Score=338, Expect=1e-108]} {Dmel: FBgn0034748, CG17807, [RH, Score=345, Expect=4e-112]} {Celegans: WBGene00007581, alkb-8, ALKylated DNA repair protein AlkB homolog, [RH, Score=276, Expect=1e-85]} {Smed: dd_Smed_v6_13891_0_1, dd_Smed_v6_13891_0_1, [RH, Score=289, Expect=1e-90]} {RNA1509_25622} {RNA1310_12313} {RNA815_27910}
5.	MligTC455_21563	1621	33.76	Mlig455_060634	Neo: - Age: - Region-enriched R5: 1.229/0.00001	SCAMP1	0.95	-	-	-	-	0.950	-	Mlig455_060634 {REF} {Length: 3952} {Pfam: SCAMP family [PF04144.15, score=200.1]} {Human: ENSG00000085365, SCAMP1, secretory carrier membrane protein 1, [RH, Score=263, Expect=1e-85]; ENSG00000140497, SCAMP2, secretory carrier membrane protein 2, [RH, Score=250, Expect=1e-80]} {Mouse: ENSMUSG00000021687, Scamp1, secretory carrier membrane protein 1, [RH, Score=263, Expect=6e-86]} {Dmel: FBgn0040285, Scamp, [RH, Score=241, Expect=3e-77]} {Celegans: WBGene00004743, scm-1, Secretory carrier-associated membrane protein, [Score=195, Expect=1e-59]} {Smed: dd_Smed_v6_8593_0_1, dd_Smed_v6_8593_0_1, [RH, Score=240, Expect=6e-78]} {RNA1509_19649, RNA1509_23434, RNA1509_25411, RNA1509_31968, RNA1509_52816, RNA1509_56189, RNA1509_58873, RNA1509_6655} {RNA1310_11060.1, RNA1509_19649, RNA1509_23434, RNA1509_25411, RNA1509_31968, RNA1509_52816, RNA1509_56189, RNA1509_58873, RNA1509_6655} {RNA1509_19649, RNA1509_23434, RNA1509_25411, RNA1509_31968, RNA1509_52816, RNA1509_56189, RNA1509_58873, RNA1509_6655, RNA815_1980.1}
6.	MligTC455_32204	753	15.68	Mlig455_051618	Neo: - Age: Down-Up-Up	SURF1	0.95	-	-	-	-	-	0.950	Mlig455_051618 {REF} {Length: 1070} {TRANSSPLICED} {Pfam: SURF1 family [PF02104.17, score=145.7]} {Human: ENSG00000280627, SURF1, SURF1, cytochrome c oxidase assembly factor, [RH, Score=165, Expect=3e-48]; ENSG00000148290, SURF1, SURF1, cytochrome c oxidase assembly factor, [RH, Score=165, Expect=3e-48]} {Mouse: ENSMUSG00000015790, Surf1, surfeit gene 1, [RH, Score=169, Expect=3e-50]} {Dmel: FBgn0029117, Surf1, Surfeit 1, [RH, Score=164, Expect=3e-48]} {Celegans: WBGene00004787, sft-1, SURF1-like protein, [RH, Score=151, Expect=3e-43]} {Smed: dd_Smed_v6_8214_0_1, dd_Smed_v6_8214_0_1, [RH, Score=139, Expect=3e-39]} {RNA1509_23000, RNA1509_43248} {RNA1310_30329, RNA1509_23000, RNA1509_43248} {RNA1509_23000, RNA1509_43248, RNA815_15368.1}

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