M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30503

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30503 905 18.85 Mlig455_023476

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.310

Region-enriched R3: 1.685/0.00016

 ANK1 Mlig455_023476 {REF} {Length: 3816} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=76.6]; Ankyrin repeats (many copies) [PF13637.8, score=62.4]; Ankyrin repeat [PF13606.8, score=50.0]; Ankyrin repeats (many copies) [PF13857.8, score=44.1]; Ankyrin repeat [PF00023.32, score=34.7]; Transposase (partial DDE domain) [PF01359.20, score=19.5]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=76.3, Expect=2e-13]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=75.9, Expect=1e-13]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=65.9, Expect=8e-11]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=62.8, Expect=9e-10]} {Smed: dd_Smed_v6_11663_0_3, dd_Smed_v6_11663_0_3, [Score=76.3, Expect=4e-15]} {RNA1509_34520} {RNA1310_3327} {RNA815_7131}

Cumulative graph for MligTC455_30503

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.471 4.424 0.57030 1.00000
RegionR2 -0.529 4.424 0.28157 0.66821
RegionR3 1.685 4.424 0.00000 0.00016
RegionR4 0.54 4.424 0.20214 0.48255
RegionR5 -0.955 4.424 0.01275 0.06903
RegionR6 -0.566 4.424 0.16361 0.71793
RegionR7 -0.322 4.424 0.49786 1.00000
RegionR8 -0.324 4.424 0.56105 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.165 4.424 0.40167 1.00000
RegenerationR2 -0.642 4.424 0.19357 0.63831
RegenerationR3 -1.305 4.424 0.00458 0.12197
RegenerationR4 -1.641 4.424 0.00059 0.02435
RegenerationR5 -0.523 4.424 0.28599 0.71441
RegenerationR6 -0.679 4.424 0.20504 0.54705
RegenerationBL -0.53 4.424 0.38388 0.75242
RegenerationTP 0.272 4.424 0.64383 0.98531


Genes with expression patterns similar to MligTC455_30503

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30503 905 18.85 Mlig455_023476

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.310

Region-enriched R3: 1.685/0.00016

 ANK1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_023476 {REF} {Length: 3816} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=76.6]; Ankyrin repeats (many copies) [PF13637.8, score=62.4]; Ankyrin repeat [PF13606.8, score=50.0]; Ankyrin repeats (many copies) [PF13857.8, score=44.1]; Ankyrin repeat [PF00023.32, score=34.7]; Transposase (partial DDE domain) [PF01359.20, score=19.5]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=76.3, Expect=2e-13]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=75.9, Expect=1e-13]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=65.9, Expect=8e-11]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=62.8, Expect=9e-10]} {Smed: dd_Smed_v6_11663_0_3, dd_Smed_v6_11663_0_3, [Score=76.3, Expect=4e-15]} {RNA1509_34520} {RNA1310_3327} {RNA815_7131}
2. MligTC455_12332 267 5.56 Mlig455_064095

Neo: -

Age: Down-Up-Up

Region-enriched R3: 3.779/0.00003
Region-enriched R4: 2.506/0.03584

 AMY2B 2.592 0.817 - 0.817 - - 0.958 Mlig455_064095 {REF} {Length: 2627} {Pfam: Alpha amylase, catalytic domain [PF00128.26, score=50.1]} {Human: ENSG00000240038, AMY2B, amylase, alpha 2B (pancreatic), [Score=449, Expect=2e-150]; ENSG00000243480, AMY2A, amylase, alpha 2A (pancreatic), [Score=446, Expect=2e-149]; ENSG00000237763, AMY1A, amylase, alpha 1A (salivary), [Score=443, Expect=3e-148]; ENSG00000174876, AMY1B, amylase, alpha 1B (salivary), [Score=443, Expect=3e-148]; ENSG00000187733, AMY1C, amylase, alpha 1C (salivary), [Score=443, Expect=3e-148]} {Mouse: ENSMUSG00000096569, Amy2a2, amylase 2a2, [Score=456, Expect=2e-153]; ENSMUSG00000093931, Amy2a3, amylase 2a3, [Score=456, Expect=2e-153]; ENSMUSG00000074268, Amy2a5, amylase 2a5, [Score=456, Expect=2e-153]; ENSMUSG00000096770, Amy2a4, amylase 2a4, [Score=456, Expect=2e-153]; ENSMUSG00000074264, Amy1, amylase 1, salivary, [Score=449, Expect=2e-150]} {Dmel: FBgn0000078, Amy-d, Amylase distal, [Score=444, Expect=5e-149]} {Celegans: WBGene00008220, C50B6.7, Alpha-amylase, [RH, Score=498, Expect=4e-167]} {RNA1509_23356} {RNA1310_9685.1, RNA1509_23356} {RNA1509_23356, RNA815_3291}
3. MligTC455_26828 498 10.38 Mlig455_008823, Mlig455_039310

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.736

Region-enriched R3: 5.815/0.00000
Region-enriched R4: 2.806/0.02173

Regeneration-downregulated R3: -4.188

Regeneration-depleted R3: -4.188

 1.69 0.736 - - - - 0.954

Mlig455_008823 {REF} {Length: 442} {RNA1509_45911, RNA1509_4597} {RNA1310_97486, RNA1509_4597} {RNA1509_4597, RNA815_6057.6}

Mlig455_039310 {REF} {Length: 215} {RNA1509_50726} {RNA1310_97486} {RNA815_6057.3}
4. MligTC455_26831 233 4.85 Mlig455_059991

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_059991 {REF} {Length: 589} {NoTransDecoderORF} {RNA1509_27797} {RNA1310_12471} {RNA815_4638}
5. MligTC455_23093 345 7.19 Mlig455_021893

Neo: -

Age: Down-Up-Up

Region-enriched R3: 3.624/0.00000

 0.963 - - - - - 0.963 Mlig455_021893 {REF} {Length: 1735} {RNA1509_30322, RNA1509_50391} {RNA1310_32503, RNA1509_50391} {RNA1509_50391, RNA815_39630}
6. MligTC455_41167 374 7.78 Mlig455_040967

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=3.566

Region-enriched R3: 2.641/0.00416

 NCAN 0.952 - - - - - 0.952 Mlig455_040967 {REF} {Length: 1003} {Pfam: Lectin C-type domain [PF00059.23, score=32.4]} {Human: ENSG00000130287, NCAN, neurocan, [Score=67.0, Expect=4e-13]} {Mouse: ENSMUSG00000002341, Ncan, neurocan, [Score=66.2, Expect=5e-13]} {Celegans: WBGene00020585, clec-178, C-type LECtin, [Score=64.3, Expect=2e-13]} {Smed: dd_Smed_v6_1489_0_1, dd_Smed_v6_1489_0_1, [Score=56.6, Expect=4e-10]} {RNA1509_4111} {RNA1310_16505.2} {RNA815_8835}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA