TomoSeq data search

Data search

Results for MligTC455_30576

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_30576	33	0.68	Mlig455_023787, Mlig455_066353	Neo: - Age: -	PCDH1	Mlig455_023787 {REF} {Length: 5733} {Pfam: Cadherin domain [PF00028.19, score=272.7]; Cadherin-like [PF08266.14, score=38.5]; Bacterial cadherin-like domain [PF17803.3, score=26.9]; Cadherin-like [PF16184.7, score=22.7]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=269, Expect=3e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=264, Expect=4e-72]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=261, Expect=9e-71]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=4e-70]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=272, Expect=2e-75]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=263, Expect=7e-72]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=259, Expect=3e-70]} {Dmel: FBgn0024836, stan, starry night, [Score=211, Expect=5e-55]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=183, Expect=2e-46]} {Smed: dd_Smed_v6_16629_0_1, dd_Smed_v6_16629_0_1, [RH, Score=287, Expect=7e-81]} {RNA1509_25618} {RNA1310_5650.1, RNA1509_25618} {RNA1509_25618, RNA815_14466} Mlig455_066353 {REF} {Length: 4208} {Pfam: Cadherin domain [PF00028.19, score=273.6]; Cadherin-like [PF08266.14, score=40.1]; Bacterial cadherin-like domain [PF17803.3, score=23.9]; Cadherin-like [PF16184.7, score=23.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=265, Expect=8e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=262, Expect=5e-73]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=261, Expect=1e-72]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=6e-72]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=268, Expect=4e-75]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=261, Expect=1e-73]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=258, Expect=1e-71]} {Dmel: FBgn0024836, stan, starry night, [Score=213, Expect=2e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=185, Expect=1e-47]} {Smed: dd_Smed_v6_16629_0_1, dd_Smed_v6_16629_0_1, [RH, Score=283, Expect=5e-81]} {RNA1509_25618} {RNA1310_5650.1} {RNA815_14466}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_30576

0.68

Mlig455_023787, Mlig455_066353

Neo: -

Age: -

PCDH1

Mlig455_023787 {REF} {Length: 5733} {Pfam: Cadherin domain [PF00028.19, score=272.7]; Cadherin-like [PF08266.14, score=38.5]; Bacterial cadherin-like domain [PF17803.3, score=26.9]; Cadherin-like [PF16184.7, score=22.7]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=269, Expect=3e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=264, Expect=4e-72]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=261, Expect=9e-71]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=4e-70]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=272, Expect=2e-75]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=263, Expect=7e-72]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=259, Expect=3e-70]} {Dmel: FBgn0024836, stan, starry night, [Score=211, Expect=5e-55]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=183, Expect=2e-46]} {Smed: dd_Smed_v6_16629_0_1, dd_Smed_v6_16629_0_1, [RH, Score=287, Expect=7e-81]} {RNA1509_25618} {RNA1310_5650.1, RNA1509_25618} {RNA1509_25618, RNA815_14466}

Mlig455_066353 {REF} {Length: 4208} {Pfam: Cadherin domain [PF00028.19, score=273.6]; Cadherin-like [PF08266.14, score=40.1]; Bacterial cadherin-like domain [PF17803.3, score=23.9]; Cadherin-like [PF16184.7, score=23.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=265, Expect=8e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=262, Expect=5e-73]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=261, Expect=1e-72]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=6e-72]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=268, Expect=4e-75]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=261, Expect=1e-73]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=258, Expect=1e-71]} {Dmel: FBgn0024836, stan, starry night, [Score=213, Expect=2e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=185, Expect=1e-47]} {Smed: dd_Smed_v6_16629_0_1, dd_Smed_v6_16629_0_1, [RH, Score=283, Expect=5e-81]} {RNA1509_25618} {RNA1310_5650.1} {RNA815_14466}

Cumulative graph for MligTC455_30576

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-4.581	1.102	0.99964	1.00000
RegionR2	3.444	1.102	0.04962	0.26544
RegionR3	1.379	1.102	0.24863	0.79228
RegionR4	-1.657	1.102	0.99320	1.00000
RegionR5	-1.805	1.102	0.98903	1.00000
RegionR6	0.534	1.102	0.64390	1.00000
RegionR7	-1.244	1.102	1.00000	1.00000
RegionR8	3.93	1.102	0.04863	0.43254

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	5.316	1.102	0.99965	1.00000
RegenerationR2	3.415	1.102	0.00324	0.08710
RegenerationR3	2.441	1.102	0.04419	0.36726
RegenerationR4	2.899	1.102	0.04926	0.35782
RegenerationR5	3.521	1.102	0.00688	0.15108
RegenerationR6	2.613	1.102	0.07526	0.34290
RegenerationBL	4.12	1.102	0.01797	0.14365
RegenerationTP	3.415	1.102	0.06922	0.42275

Genes with expression patterns similar to MligTC455_30576

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_30576	33	0.68	Mlig455_023787, Mlig455_066353	Neo: - Age: -	PCDH1	4	1.000	1.000	-	-	1.000	1.000	Mlig455_023787 {REF} {Length: 5733} {Pfam: Cadherin domain [PF00028.19, score=272.7]; Cadherin-like [PF08266.14, score=38.5]; Bacterial cadherin-like domain [PF17803.3, score=26.9]; Cadherin-like [PF16184.7, score=22.7]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=269, Expect=3e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=264, Expect=4e-72]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=261, Expect=9e-71]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=4e-70]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=272, Expect=2e-75]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=263, Expect=7e-72]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=259, Expect=3e-70]} {Dmel: FBgn0024836, stan, starry night, [Score=211, Expect=5e-55]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=183, Expect=2e-46]} {Smed: dd_Smed_v6_16629_0_1, dd_Smed_v6_16629_0_1, [RH, Score=287, Expect=7e-81]} {RNA1509_25618} {RNA1310_5650.1, RNA1509_25618} {RNA1509_25618, RNA815_14466} Mlig455_066353 {REF} {Length: 4208} {Pfam: Cadherin domain [PF00028.19, score=273.6]; Cadherin-like [PF08266.14, score=40.1]; Bacterial cadherin-like domain [PF17803.3, score=23.9]; Cadherin-like [PF16184.7, score=23.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=265, Expect=8e-74]; ENSG00000184226, PCDH9, protocadherin 9, [Score=262, Expect=5e-73]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=261, Expect=1e-72]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=259, Expect=6e-72]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=268, Expect=4e-75]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=261, Expect=1e-73]; ENSMUSG00000034755, Pcdh11x, protocadherin 11 X-linked, [Score=258, Expect=1e-71]} {Dmel: FBgn0024836, stan, starry night, [Score=213, Expect=2e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=185, Expect=1e-47]} {Smed: dd_Smed_v6_16629_0_1, dd_Smed_v6_16629_0_1, [RH, Score=283, Expect=5e-81]} {RNA1509_25618} {RNA1310_5650.1} {RNA815_14466}
2.	MligTC455_52093	200	4.17	Mlig455_026940, Mlig455_027028, Mlig455_027091	Neo: - Age: -		1.745	0.786	-	-	-	-	0.959	Mlig455_026940 {REF} {Length: 2010} {RNA1310_29141} {RNA815_58200} Mlig455_027028 {REF} {Length: 1107} {NoTransDecoderORF} {RNA1310_29141} {RNA815_58200} Mlig455_027091 {REF} {Length: 1224} {RNA1310_29141} {RNA815_58200}
3.	MligTC455_28598	102	2.13	Mlig455_057552	Neo: - Age: -		0.975	-	-	-	-	0.975	-	Mlig455_057552 {REF} {Length: 3851} {TRANSSPLICED} {RNA1509_60109} {RNA1310_21727} {RNA815_11299}
4.	MligTC455_21779	274	5.71	Mlig455_027616	Neo: - Age: Down-Up-Up		0.967	-	-	-	-	-	0.967	Mlig455_027616 {REF} {Length: 1003} {Pfam: WSC domain [PF01822.21, score=44.2]; PAN domain [PF00024.28, score=18.6]} {RNA1310_34968.1} {RNA815_9084.1}
5.	MligTC455_09368	14	0.3	Mlig455_055483	Neo: - Age: -		0.965	-	-	-	-	0.965	-	Mlig455_055483 {REF} {Length: 459} {NoTransDecoderORF} {RNA1310_63892}
6.	MligTC455_15025	155	3.23	Mlig455_015827	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.406		0.959	-	-	-	-	-	0.959	Mlig455_015827 {REF} {Length: 2168} {RNA1509_16623} {RNA1310_11801.1, RNA1509_16623} {RNA1509_16623, RNA815_6419.1}
7.	MligTC455_15519	101	2.1	Mlig455_034476, Mlig455_066229	Neo: - Age: -		0.959	-	-	-	-	-	0.959	Mlig455_034476 {REF} {Length: 999} {NoTransDecoderORF} {RNA1310_84226} Mlig455_066229 {REF} {Length: 1166} {NoTransDecoderORF} {RNA1310_84218} {RNA815_34411}
8.	MligTC455_10176	433	9.02	Mlig455_054069, Mlig455_063288	Neo: - Age: logFC(26M/2M)=-0.395	CALM2	0.956	-	-	-	-	-	0.956	Mlig455_054069 {REF} {Length: 1924} {Pfam: EF hand [PF00036.34, score=102.7]; EF-hand domain pair [PF13499.8, score=88.5]; EF-hand domain [PF13405.8, score=86.2]; EF-hand domain pair [PF13833.8, score=70.2]; EF hand [PF13202.8, score=68.0]; EF-hand domain [PF14658.8, score=40.5]; Caleosin related protein [PF05042.15, score=28.3]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=26.0]; Dockerin type I domain [PF00404.20, score=24.5]; Tellurite resistance protein TerB [PF05099.15, score=23.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=22.7]; Uncharacterised protein family (UPF0154) [PF03672.15, score=22.0]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=171, Expect=5e-55]; ENSG00000198668, CALM1, calmodulin 1, [Score=170, Expect=5e-55]; ENSG00000160014, CALM3, calmodulin 3, [Score=170, Expect=5e-55]} {Mouse: ENSMUSG00000019370, Calm3, calmodulin 3, [Score=170, Expect=4e-55]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=170, Expect=4e-55]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=170, Expect=4e-55]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=171, Expect=1e-55]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=171, Expect=9e-56]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=171, Expect=7e-56]} {RNA1509_41645} {RNA1310_38513} {RNA815_20818} Mlig455_063288 {REF} {Length: 3677} {RNA1509_41645} {RNA1310_24217} {RNA815_20818}
9.	MligTC455_41577	226	4.7	Mlig455_056190	Neo: - Age: -	CPA2	0.956	-	-	-	-	-	0.956	Mlig455_056190 {REF} {Length: 2220} {Pfam: Zinc carboxypeptidase [PF00246.26, score=244.5]; Carboxypeptidase activation peptide [PF02244.18, score=24.0]} {Human: ENSG00000158516, CPA2, carboxypeptidase A2, [Score=181, Expect=2e-51]; ENSG00000165078, CPA6, carboxypeptidase A6, [Score=179, Expect=2e-50]; ENSG00000144410, CPO, carboxypeptidase O, [Score=179, Expect=3e-51]; ENSG00000128510, CPA4, carboxypeptidase A4, [Score=174, Expect=1e-48]} {Mouse: ENSMUSG00000071553, Cpa2, carboxypeptidase A2, pancreatic, [Score=189, Expect=1e-54]; ENSMUSG00000042501, Cpa6, carboxypeptidase A6, [Score=187, Expect=1e-53]} {Dmel: FBgn0029804, CG3097, [RH, Score=215, Expect=2e-64]} {Celegans: WBGene00020281, T06A4.1, [RH, Score=223, Expect=3e-66]} {Smed: dd_Smed_v6_5999_0_1, dd_Smed_v6_5999_0_1, [RH, Score=248, Expect=2e-77]} {RNA1509_12605} {RNA1310_10687.1, RNA1509_12605} {RNA1509_12605, RNA815_3959.1}
10.	MligTC455_26259	76	1.59	Mlig455_026466	Neo: - Age: -	SSUH2	0.955	-	-	-	-	-	0.955	Mlig455_026466 {REF} {Length: 2558} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=211, Expect=9e-64]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=168, Expect=6e-48]} {Celegans: WBGene00013455, ssu-2, Suppressor of Stomatin mutant Uncoordination, [Score=67.8, Expect=3e-12]} {RNA1509_35931} {RNA1310_33249} {RNA815_15534}
11.	MligTC455_40818	639	13.3	Mlig455_052157, Mlig455_054166, Mlig455_060705	Neo: - Age: - Region-enriched R2: 3.411/0.00218 Region-enriched R7: 2.728/0.03044 Regeneration-downregulated BL: -7.120 Regeneration-depleted BL: -7.120		0.955	-	-	-	-	-	0.955	Mlig455_052157 {REF} {Length: 1229} {RNA1310_27543} {RNA815_14190} Mlig455_054166 {REF} {Length: 1295} {RNA1310_27543} {RNA815_14190} Mlig455_060705 {REF} {Length: 1292} {RNA1310_27543} {RNA815_14190}
12.	MligTC455_49296	69	1.44	Mlig455_034352, Mlig455_034414	Neo: - Age: -		0.953	-	-	-	-	-	0.953	Mlig455_034352 {REF} {Length: 912} {TRANSSPLICED} Mlig455_034414 {REF} {Length: 919} {TRANSSPLICED}
13.	MligTC455_18501	200	4.16	Mlig455_031954	Neo: - Age: Down-Up-Up		0.952	-	-	-	-	-	0.952	Mlig455_031954 {REF} {Length: 1030} {RNA1509_49054} {RNA1310_32906} {RNA815_15169}
14.	MligTC455_14292	30	0.62	Mlig455_051884	Neo: - Age: logFC(26M/2M)=0.485	UNG	0.95	-	-	-	-	-	0.950	Mlig455_051884 {REF} {Length: 4016} {TRANSSPLICED} {Pfam: Uracil DNA glycosylase superfamily [PF03167.21, score=63.1]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=56.0]} {Human: ENSG00000076248, UNG, uracil DNA glycosylase, [Score=236, Expect=1e-69]} {Mouse: ENSMUSG00000029591, Ung, uracil DNA glycosylase, [Score=234, Expect=8e-69]} {Celegans: WBGene00013241, ung-1, Uracil-DNA glycosylase, [Score=155, Expect=2e-42]} {Smed: dd_Smed_v6_1568_0_1, dd_Smed_v6_1568_0_1, [Score=211, Expect=6e-62]} {RNA1509_1178} {RNA1310_13731} {RNA815_4445}