M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30652

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30652 30 0.62 Mlig455_060583, Mlig455_063330

Neo: -

Age: Up-Down-Down

Mlig455_060583 {REF} {Length: 3121} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=51.1]} {Dmel: FBgn0031617, CG15635, [RH, Score=78.6, Expect=3e-16]} {RNA1509_44743} {RNA1310_5450.1} {RNA815_16253.1}

Mlig455_063330 {REF} {Length: 2918} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=51.1]} {Dmel: FBgn0031617, CG15635, [RH, Score=78.6, Expect=3e-16]} {RNA1509_13981} {RNA1310_616.2} {RNA815_2054.1}

Cumulative graph for MligTC455_30652

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.106 0.885 0.99993 1.00000
RegionR2 4.92 0.885 1.00000 1.00000
RegionR3 0.559 0.885 0.99995 1.00000
RegionR4 -1.917 0.885 0.99964 1.00000
RegionR5 -0.853 0.885 0.99986 1.00000
RegionR6 -1.06 0.885 0.99985 1.00000
RegionR7 -0.113 0.885 0.99987 1.00000
RegionR8 0.571 0.885 0.99993 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.946 0.885 0.99996 1.00000
RegenerationR2 -1.561 0.885 0.01299 0.18525
RegenerationR3 0.848 0.885 0.99987 1.00000
RegenerationR4 0.769 0.885 0.72250 0.96222
RegenerationR5 -0.633 0.885 0.99964 1.00000
RegenerationR6 1.819 0.885 1.00000 1.00000
RegenerationBL -0.475 0.885 0.99988 1.00000
RegenerationTP 2.374 0.885 0.99997 1.00000


Genes with expression patterns similar to MligTC455_30652

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30652 30 0.62 Mlig455_060583, Mlig455_063330

Neo: -

Age: Up-Down-Down

 1 - - - - 1.000 -

Mlig455_060583 {REF} {Length: 3121} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=51.1]} {Dmel: FBgn0031617, CG15635, [RH, Score=78.6, Expect=3e-16]} {RNA1509_44743} {RNA1310_5450.1} {RNA815_16253.1}

Mlig455_063330 {REF} {Length: 2918} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=51.1]} {Dmel: FBgn0031617, CG15635, [RH, Score=78.6, Expect=3e-16]} {RNA1509_13981} {RNA1310_616.2} {RNA815_2054.1}
2. MligTC455_17180 53 1.11 Mlig455_013848

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.617

 0.988 - - - - 0.988 - Mlig455_013848 {REF} {Length: 1527} {RNA1509_35425} {RNA1310_50881} {RNA815_40733}
3. MligTC455_20254 351 7.31 Mlig455_029558

Neo: -

Age: logFC(26M/2M)=-0.727

 0.981 - - - - 0.981 - Mlig455_029558 {REF} {Length: 442} {RNA1509_31276} {RNA1310_93944, RNA1509_31276} {RNA1509_31276, RNA815_51607}
4. MligTC455_27836 130 2.7 Mlig455_006287

Neo: -

Age: -

 ANKRD42 0.977 - - - - 0.977 - Mlig455_006287 {REF} {Length: 9672} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=112.7]; Ankyrin repeats (many copies) [PF13637.8, score=87.9]; Ankyrin repeats (many copies) [PF13857.8, score=60.1]; Ankyrin repeat [PF13606.8, score=44.5]; Ankyrin repeat [PF00023.32, score=36.6]} {Human: ENSG00000137494, ANKRD42, ankyrin repeat domain 42, [Score=58.2, Expect=6e-09]; ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [Score=57.0, Expect=1e-08]} {Mouse: ENSMUSG00000041343, Ankrd42, ankyrin repeat domain 42, [Score=63.9, Expect=4e-11]} {Dmel: FBgn0263601, mib1, mind bomb 1, [Score=62.0, Expect=2e-10]} {Smed: dd_Smed_v6_13251_0_1, dd_Smed_v6_13251_0_1, [Score=57.8, Expect=2e-09]} {RNA1509_20493} {RNA1310_131.1} {RNA815_52.1}
5. MligTC455_34571 52 1.08 Mlig455_070552

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.675

 SPEM3 0.974 - - - - 0.974 - Mlig455_070552 {REF} {Length: 1412} {Pfam: Cornifin (SPRR) family [PF02389.17, score=38.5]} {Human: ENSG00000284090, SPEM3, SPEM family member 3, [Score=57.4, Expect=3e-08]; ENSG00000283439, SPEM3, SPEM family member 3, [Score=57.4, Expect=3e-08]} {RNA1509_3061} {RNA1310_189.1} {RNA815_86.1}
6. MligTC455_30270 406 8.46 Mlig455_012719, Mlig455_044289

Neo: Int S/G2/M

Age: -

Regeneration-upregulated BL: 4.823

Regeneration-enriched BL: 4.823

 0.972 - - - - 0.972 -

Mlig455_012719 {REF} {Length: 392} {RNA1509_16349} {RNA1310_2575}

Mlig455_044289 {REF} {Length: 4784} {RNA1509_16349} {RNA1310_2575} {RNA815_3500.1}
7. MligTC455_39886 130 2.71 Mlig455_018360

Neo: -

Age: -

Region-enriched R2: 4.560/0.00239

 0.967 - - - - 0.967 - Mlig455_018360 {REF} {Length: 2293} {Pfam: NAD dependent epimerase/dehydratase family [PF01370.23, score=79.2]; GDP-mannose 4,6 dehydratase [PF16363.7, score=55.7]; RmlD substrate binding domain [PF04321.19, score=35.8]; Male sterility protein [PF07993.14, score=33.5]; 3-beta hydroxysteroid dehydrogenase/isomerase family [PF01073.21, score=25.1]; Polysaccharide biosynthesis protein [PF02719.17, score=21.6]} {Mouse: ENSMUSG00000021953, Tdh, L-threonine dehydrogenase, [RH, Score=414, Expect=1e-143]} {Dmel: FBgn0036997, CG5955, [RH, Score=444, Expect=5e-156]} {Celegans: WBGene00017262, F08F3.4, [RH, Score=340, Expect=3e-115]} {Smed: dd_Smed_v6_12075_0_1, dd_Smed_v6_12075_0_1, [RH, Score=444, Expect=7e-157]} {RNA1509_44687} {RNA1310_15323} {RNA815_7207.1}
8. MligTC455_28066 54 1.13 Mlig455_046514

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_046514 {REF} {Length: 2208} {NoTransDecoderORF} {RNA1509_60018} {RNA1310_100111} {RNA815_22045}
9. MligTC455_30228 51 1.07 Mlig455_006181, Mlig455_030077, Mlig455_036075, Mlig455_036097, Mlig455_049726, Mlig455_070542

Neo: -

Age: -

Region-enriched R5: 3.456/0.03276

 PIF1 0.966 - - - - 0.966 -

Mlig455_006181 {REF} {Length: 5128} {Pfam: PIF1-like helicase [PF05970.16, score=232.2]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.6]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=52.4, Expect=5e-06]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=52.0, Expect=5e-06]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=59.7, Expect=1e-08]} {Celegans: WBGene00019136, F59H6.5, [Score=565, Expect=2e-178]} {Smed: dd_Smed_v6_91935_0_1, dd_Smed_v6_91935_0_1, [Score=68.2, Expect=2e-13]} {RNA1509_5036} {RNA1310_4048.1} {RNA815_356.1}

Mlig455_030077 {REF} {Length: 6580} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=175.5]} {Celegans: WBGene00019136, F59H6.5, [Score=412, Expect=6e-125]} {Smed: dd_Smed_v6_5211_0_1, dd_Smed_v6_5211_0_1, [Score=72.4, Expect=4e-14]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_036075 {REF} {Length: 5097} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=332.7]; Helitron helicase-like domain at N-terminus [PF14214.8, score=170.5]; AAA domain [PF13604.8, score=44.2]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.3]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=124, Expect=3e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=118, Expect=2e-26]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=121, Expect=1e-27]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=783, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=114, Expect=1e-25]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_036097 {REF} {Length: 5327} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=332.5]; Helitron helicase-like domain at N-terminus [PF14214.8, score=170.4]; AAA domain [PF13604.8, score=44.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.2]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=124, Expect=3e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=118, Expect=1e-26]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=120, Expect=2e-27]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=770, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=114, Expect=1e-25]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_049726 {REF} {Length: 5322} {Pfam: PIF1-like helicase [PF05970.16, score=328.1]; Helitron helicase-like domain at N-terminus [PF14214.8, score=171.9]; AAA domain [PF13604.8, score=44.8]; UvrD-like helicase C-terminal domain [PF13538.8, score=24.3]; Helicase [PF02689.16, score=17.1]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=122, Expect=9e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=118, Expect=2e-26]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=118, Expect=9e-27]} {Celegans: WBGene00021194, Y16E11A.2, [Score=723, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=114, Expect=1e-25]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_070542 {REF} {Length: 5678} {Pfam: PIF1-like helicase [PF05970.16, score=334.4]; Helitron helicase-like domain at N-terminus [PF14214.8, score=173.4]; AAA domain [PF13604.8, score=46.0]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.3]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=125, Expect=2e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=120, Expect=4e-27]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=120, Expect=2e-27]} {Celegans: WBGene00019136, F59H6.5, [Score=765, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=116, Expect=2e-26]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}
10. MligTC455_31904 110 2.3 Mlig455_045507

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.927

 0.966 - - - - 0.966 - Mlig455_045507 {REF} {Length: 5997} {Pfam: PAS domain [PF13188.9, score=18.9]} {RNA1509_21038} {RNA1310_11597.1} {RNA815_20842.1}
11. MligTC455_43608 32 0.68 Mlig455_022119

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_022119 {REF} {Length: 1506} {NoTransDecoderORF} {RNA1509_46209} {RNA1310_74551} {RNA815_20255}
12. MligTC455_08206 21 0.45 Mlig455_048013

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_048013 {REF} {Length: 3986} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=47.2]} {RNA1509_44743} {RNA1310_5450.1} {RNA815_7717.1}
13. MligTC455_26268 55 1.15 Mlig455_048366

Neo: -

Age: -

 CDR1 0.964 - - - - 0.964 - Mlig455_048366 {REF} {Length: 1818} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=47.8]} {Human: ENSG00000184258, CDR1, cerebellar degeneration related protein 1, [RH, Score=54.3, Expect=2e-08]} {RNA1509_12420} {RNA1310_46323} {RNA815_13104.1}
14. MligTC455_29066 215 4.47 Mlig455_043845

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_043845 {REF} {Length: 3707} {TRANSSPLICED} {RNA1509_13168} {RNA1310_4523} {RNA815_5087}
15. MligTC455_32505 33 0.69 Mlig455_030857

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_030857 {REF} {Length: 3123} {RNA1509_52584} {RNA1310_46531} {RNA815_28242}
16. MligTC455_50370 7310 152.29 Mlig455_009385, Mlig455_009674, Mlig455_036935

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_009385 {REF} {Length: 1783} {RNA1509_9135} {RNA1310_18269.1} {RNA815_7221.1}

Mlig455_009674 {REF} {Length: 1962} {RNA1509_9135} {RNA1310_18269.1} {RNA815_7221.1}

Mlig455_036935 {REF} {Length: 1647} {RNA1509_9135} {RNA1310_18269.1} {RNA815_7221.1}
17. MligTC455_20963 45 0.95 Mlig455_003762

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_003762 {REF} {Length: 1917} {NoTransDecoderORF} {RNA1509_15862} {RNA1310_73168} {RNA815_32666}
18. MligTC455_31877 43 0.89 Mlig455_024064

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_024064 {REF} {Length: 2516} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=30.6]} {RNA1509_41356, RNA1509_42331} {RNA1310_5450.1, RNA1509_42331} {RNA1509_42331, RNA815_8149.1}
19. MligTC455_09787 67 1.4 Mlig455_016378

Neo: Germline

Age: Up-Down-Down

Regeneration-enriched R2: 6.955
Regeneration-enriched R3: 5.098
Regeneration-enriched R5: 4.063

 PRKACB 0.958 - - - - 0.958 - Mlig455_016378 {REF} {Length: 2455} {Pfam: Protein kinase domain [PF00069.27, score=206.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=132.6]} {Human: ENSG00000142875, PRKACB, protein kinase cAMP-activated catalytic subunit beta, [Score=191, Expect=3e-57]; ENSG00000072062, PRKACA, protein kinase cAMP-activated catalytic subunit alpha, [Score=189, Expect=1e-56]} {Mouse: ENSMUSG00000005034, Prkacb, protein kinase, cAMP dependent, catalytic, beta, [Score=193, Expect=1e-57]; ENSMUSG00000005469, Prkaca, protein kinase, cAMP dependent, catalytic, alpha, [Score=189, Expect=1e-56]} {Dmel: FBgn0000273, Pka-C1, Protein kinase, cAMP-dependent, catalytic subunit 1, [Score=184, Expect=1e-54]} {Celegans: WBGene00002189, kin-1, cAMP-dependent protein kinase catalytic subunit, [Score=189, Expect=7e-57]} {Smed: dd_Smed_v6_911_0_1, dd_Smed_v6_911_0_1, [Score=187, Expect=4e-56]} {RNA1509_38104} {RNA1310_6772} {RNA815_44609}
20. MligTC455_26590 35 0.73 Mlig455_066492

Neo: -

Age: -

 ALKBH3 0.958 - - - - 0.958 - Mlig455_066492 {REF} {Length: 4844} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=94.3]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=117, Expect=1e-28]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=116, Expect=2e-28]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=112, Expect=3e-27]} {RNA1509_29984} {RNA1310_8204} {RNA815_9313}
21. MligTC455_38832 316 6.58 Mlig455_052280

Neo: -

Age: logFC(26M/2M)=-1.281

 0.958 - - - - 0.958 - Mlig455_052280 {REF} {Length: 2424} {Pfam: PHD-finger [PF00628.31, score=39.2]} {RNA1509_44038} {RNA1310_30980} {RNA815_17109}
22. MligTC455_54988 22 0.46 Mlig455_008981

Neo: -

Age: -

 TENT5C 0.958 - - - - 0.958 - Mlig455_008981 {REF} {Length: 428} {Pfam: Nucleotidyltransferase [PF07984.14, score=29.9]} {Human: ENSG00000183508, TENT5C, terminal nucleotidyltransferase 5C, [Score=52.4, Expect=3e-08]} {Mouse: ENSMUSG00000044468, Tent5c, terminal nucleotidyltransferase 5C, [Score=48.5, Expect=5e-07]} {RNA1509_49894} {RNA1310_116080} {RNA815_2488.1}
23. MligTC455_00408 55 1.15 Mlig455_045515

Neo: -

Age: -

Regeneration-upregulated R2: 5.953

Regeneration-enriched R2: 5.953

 0.956 - - - - 0.956 - Mlig455_045515 {REF} {Length: 707} {NoTransDecoderORF}
24. MligTC455_28998 88 1.83 Mlig455_007313

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_007313 {REF} {Length: 2647} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=63.3]} {Smed: dd_Smed_v6_13734_0_20, dd_Smed_v6_13734_0_20, [Score=51.6, Expect=2e-07]} {RNA1509_13072} {RNA1310_4523} {RNA815_17419}
25. MligTC455_31903 292 6.08 Mlig455_064011, Mlig455_070707

Neo: -

Age: -

 0.956 - - - - 0.956 -

Mlig455_064011 {REF} {Length: 5320} {Pfam: PAS domain [PF13188.9, score=21.4]} {RNA1509_35931} {RNA1310_11597.1} {RNA815_20842.1}

Mlig455_070707 {REF} {Length: 3967} {Pfam: PAS domain [PF13188.9, score=21.2]; Lines N-terminus [PF14694.8, score=18.8]} {RNA1509_31473} {RNA1310_51110.1} {RNA815_20842.1}
26. MligTC455_27834 437 9.11 Mlig455_003625, Mlig455_044671

Neo: -

Age: logFC(26M/2M)=1.954

 0.955 - - - - 0.955 -

Mlig455_003625 {REF} {Length: 8904} {TRANSSPLICED} {Pfam: Integrase zinc binding domain [PF17921.3, score=71.1]; Integrase core domain [PF00665.28, score=51.2]; DDE superfamily endonuclease [PF13358.8, score=21.8]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=205, Expect=2e-60]} {RNA1509_6137} {RNA1310_131.1} {RNA815_52.1}

Mlig455_044671 {REF} {Length: 10362} {Pfam: Zinc knuckle [PF00098.25, score=20.8]} {RNA1509_6137} {RNA1310_131.1} {RNA815_52.1}
27. MligTC455_36641 77 1.6 Mlig455_003189, Mlig455_051811

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_003189 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_41508} {RNA1310_108926} {RNA815_45877.2}

Mlig455_051811 {REF} {Length: 2394} {RNA1509_20157} {RNA1310_1800.1} {RNA815_318.1}
28. MligTC455_31898 84 1.76 Mlig455_030705

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_030705 {REF} {Length: 6466} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=28.6]} {RNA1509_5045} {RNA1310_667.3} {RNA815_350}
29. MligTC455_39356 15 0.3 Mlig455_027654

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_027654 {REF} {Length: 4822} {Celegans: WBGene00019192, H12I13.3, [Score=78.2, Expect=7e-18]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=46.6, Expect=6e-07]} {RNA1509_4722} {RNA1310_655.1} {RNA815_335.1}
30. MligTC455_28593 775 16.14 Mlig455_003148, Mlig455_003154, Mlig455_006839, Mlig455_008205, Mlig455_032426, Mlig455_034912, Mlig455_039851, Mlig455_051606, Mlig455_070582

Neo: -

Age: Up-Down-Down

 0.951 - - - - 0.951 -

Mlig455_003148 {REF} {Length: 1515} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17062} {RNA815_22796.1}

Mlig455_003154 {REF} {Length: 1543} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17062} {RNA815_22796.1}

Mlig455_006839 {REF} {Length: 1674} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17062} {RNA815_22796.1}

Mlig455_008205 {REF} {Length: 2497} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17062} {RNA815_22796.1}

Mlig455_032426 {REF} {Length: 768} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.3} {RNA815_22796.1}

Mlig455_034912 {REF} {Length: 2965} {NoTransDecoderORF} {RNA1509_20409, RNA1509_43211} {RNA1310_17062, RNA1509_43211} {RNA1509_43211, RNA815_22796.1}

Mlig455_039851 {REF} {Length: 4859} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17062} {RNA815_22796.1}

Mlig455_051606 {REF} {Length: 1496} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17062} {RNA815_22796.1}

Mlig455_070582 {REF} {Length: 1319} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17062} {RNA815_22796.1}
31. MligTC455_36065 889 18.53 Mlig455_014334, Mlig455_020356, Mlig455_031898, Mlig455_036772, Mlig455_060660

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_014334 {REF} {Length: 1229} {Pfam: Integrase core domain [PF00665.28, score=28.6]} {Smed: dd_Smed_v6_11155_0_5, dd_Smed_v6_11155_0_5, [Score=59.3, Expect=7e-11]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_020356 {REF} {Length: 6131} {Celegans: WBGene00016348, C33E10.6, [RH, Score=286, Expect=1e-84]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=300, Expect=3e-90]} {RNA1509_28643} {RNA1310_576.1} {RNA815_1671.1}

Mlig455_031898 {REF} {Length: 1129} {Pfam: Integrase core domain [PF00665.28, score=21.1]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=54.3, Expect=2e-10]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_036772 {REF} {Length: 1339} {Pfam: Integrase core domain [PF00665.28, score=34.8]} {Smed: dd_Smed_v6_11155_0_1, dd_Smed_v6_11155_0_1, [Score=57.4, Expect=4e-10]} {RNA1509_21400} {RNA1310_576.1} {RNA815_2733.1}

Mlig455_060660 {REF} {Length: 921} {Pfam: Integrase core domain [PF00665.28, score=33.9]} {Smed: dd_Smed_v6_11155_0_6, dd_Smed_v6_11155_0_6, [Score=56.6, Expect=6e-10]} {RNA1509_21400} {RNA1310_6101.1} {RNA815_23595}
32. MligTC455_54002 39320 819.17 Mlig455_062577

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.908

Region-enriched R2: 1.076/0.02199

 HPGDS 0.951 - - - - 0.951 - Mlig455_062577 {REF} {Length: 1344} {TRANSSPLICED} {Pfam: Glutathione S-transferase, C-terminal domain [PF14497.8, score=60.6]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=30.5]; Glutathione S-transferase, C-terminal domain [PF00043.27, score=22.7]} {Human: ENSG00000163106, HPGDS, hematopoietic prostaglandin D synthase, [RH, Score=104, Expect=2e-27]} {Mouse: ENSMUSG00000029919, Hpgds, hematopoietic prostaglandin D synthase, [RH, Score=90.5, Expect=2e-22]} {Celegans: WBGene00001759, gst-11, Glutathione S-Transferase, [Score=98.2, Expect=1e-25]} {Smed: dd_Smed_v6_20_0_1, dd_Smed_v6_20_0_1, [Score=176, Expect=4e-56]} {RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612} {RNA1310_24762, RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612} {RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612, RNA815_10524}
33. MligTC455_35351 57 1.19 Mlig455_065460

Neo: -

Age: -

 AF241726.2 0.95 - - - - 0.950 - Mlig455_065460 {REF} {Length: 1961} {Pfam: Tetraspanin family [PF00335.22, score=78.8]} {Human: ENSG00000250349, AF241726.2, novel proline rich Gla (G-carboxyglutamic acid) 1 (PRRG1) and tetraspanin 7 (TSPAN7) protein, [Score=54.7, Expect=8e-08]; ENSG00000156298, TSPAN7, tetraspanin 7, [Score=52.4, Expect=3e-07]} {Mouse: ENSMUSG00000067377, Tspan6, tetraspanin 6, [Score=58.9, Expect=1e-09]} {Smed: dd_Smed_v6_3116_0_1, dd_Smed_v6_3116_0_1, [Score=87.8, Expect=1e-19]} {RNA1509_60052} {RNA1310_15363} {RNA815_5523}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA