M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30955

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30955 72 1.50 Mlig455_014337

Neo: -

Age: -

 Mlig455_014337 {REF} {Length: 1382} {NoTransDecoderORF} {RNA1509_10178} {RNA1310_10801.1} {RNA815_25177}

Cumulative graph for MligTC455_30955

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.875 1.686 0.49244 1.00000
RegionR2 1.744 1.686 0.13610 0.45803
RegionR3 0.449 1.686 0.63100 1.00000
RegionR4 -1.07 1.686 0.30344 0.61660
RegionR5 0.086 1.686 0.91197 1.00000
RegionR6 0.893 1.686 0.34330 0.93052
RegionR7 0.258 1.686 0.83821 1.00000
RegionR8 -0.484 1.686 0.78000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.848 1.686 0.67461 1.00000
RegenerationR2 0.409 1.686 0.59481 0.91319
RegenerationR3 1.636 1.686 0.07667 0.45890
RegenerationR4 1.476 1.686 0.14943 0.57737
RegenerationR5 1.786 1.686 0.02949 0.28867
RegenerationR6 -0.31 1.686 0.77704 0.96606
RegenerationBL 0.806 1.686 0.54472 0.90283
RegenerationTP -0.131 1.686 0.93408 1.00000


Genes with expression patterns similar to MligTC455_30955

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30955 72 1.5 Mlig455_014337

Neo: -

Age: -

 4 - 1.000 1.000 - 1.000 1.000 Mlig455_014337 {REF} {Length: 1382} {NoTransDecoderORF} {RNA1509_10178} {RNA1310_10801.1} {RNA815_25177}
2. MligTC455_17565 85 1.77 Mlig455_054318

Neo: -

Age: -

Region-enriched R2: 6.111/0.00708

 1.765 - - 0.795 - - 0.970 Mlig455_054318 {REF} {Length: 550} {RNA1310_73705} {RNA815_38857}
3. MligTC455_46276 55 1.14 Mlig455_023064, Mlig455_023066

Neo: -

Age: logFC(26M/2M)=-0.507

 1.731 - - - - 0.771 0.960

Mlig455_023064 {REF} {Length: 3069} {TRANSSPLICED} {Pfam: SH3 domain [PF00018.30, score=22.7]} {RNA1509_53700} {RNA1310_6669} {RNA815_37465}

Mlig455_023066 {REF} {Length: 4408} {Pfam: SH3 domain [PF00018.30, score=22.7]} {RNA1509_53700} {RNA1310_6669} {RNA815_37465}
4. MligTC455_17566 28 0.58 Mlig455_054331

Neo: -

Age: -

 1.726 - - 0.753 - - 0.973 Mlig455_054331 {REF} {Length: 549} {RNA1310_73705} {RNA815_38857}
5. MligTC455_30238 78 1.62 Mlig455_066962

Neo: -

Age: Down-Up-Down

 1.699 - 0.745 - - - 0.954 Mlig455_066962 {REF} {Length: 3427} {Pfam: BTB/POZ domain [PF00651.33, score=25.4]} {RNA1509_57512} {RNA1310_22731, RNA1509_57512} {RNA1509_57512, RNA815_18902}
6. MligTC455_42583 148 3.09 Mlig455_006623

Neo: -

Age: Up-Down-Down

 MOSPD1 0.982 - - - - - 0.982 Mlig455_006623 {REF} {Length: 2507} {TRANSSPLICED} {Pfam: MSP (Major sperm protein) domain [PF00635.28, score=49.6]} {Human: ENSG00000101928, MOSPD1, motile sperm domain containing 1, [RH, Score=93.6, Expect=1e-22]} {Mouse: ENSMUSG00000023074, Mospd1, motile sperm domain containing 1, [RH, Score=95.5, Expect=2e-23]} {RNA1509_17503} {RNA1310_37601, RNA1509_17503} {RNA1509_17503, RNA815_17755}
7. MligTC455_30954 175 3.64 Mlig455_014321

Neo: -

Age: -

 PIK3R1 0.98 - - - - - 0.980 Mlig455_014321 {REF} {Length: 6805} {TRANSSPLICED} {Pfam: SH2 domain [PF00017.26, score=72.2]; RhoGAP domain [PF00620.29, score=57.8]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=39.4]; KIAA1045 RING finger [PF16744.7, score=22.3]} {Human: ENSG00000145675, PIK3R1, phosphoinositide-3-kinase regulatory subunit 1, [RH, Score=150, Expect=1e-36]} {Mouse: ENSMUSG00000028698, Pik3r3, phosphoinositide-3-kinase regulatory subunit 3, [RH, Score=140, Expect=9e-35]; ENSMUSG00000111410, Gm49337, predicted gene, 49337, [RH, Score=140, Expect=2e-34]; ENSMUSG00000041417, Pik3r1, phosphoinositide-3-kinase regulatory subunit 1, [RH, Score=136, Expect=2e-32]; ENSMUSG00000111826, Pik3r2, phosphoinositide-3-kinase regulatory subunit 2, [RH, Score=133, Expect=2e-31]; ENSMUSG00000031834, Pik3r2, phosphoinositide-3-kinase regulatory subunit 2, [RH, Score=133, Expect=2e-31]} {Dmel: FBgn0020622, Pi3K21B, [RH, Score=98.6, Expect=5e-21]} {Celegans: WBGene00000001, aap-1, Phosphoinositide 3-kinase adapter subunit; Phosphoinositide kinase AdAPter subunit, [RH, Score=85.5, Expect=6e-17]} {Smed: dd_Smed_v6_4794_0_2, dd_Smed_v6_4794_0_2, [RH, Score=191, Expect=1e-49]} {RNA1509_10178} {RNA1310_3553} {RNA815_1465}
8. MligTC455_18839 226 4.71 Mlig455_069860

Neo: -

Age: -

 0.978 - - 0.978 - - - Mlig455_069860 {REF} {Length: 674} {NoTransDecoderORF} {RNA1509_7609} {RNA1310_61947} {RNA815_31790}
9. MligTC455_28668 287 5.98 Mlig455_037141, Mlig455_050059

Neo: -

Age: -

 0.974 - - - - - 0.974

Mlig455_037141 {REF} {Length: 176} {NoTransDecoderORF} {RNA1509_39416} {RNA1310_14401} {RNA815_5545.5}

Mlig455_050059 {REF} {Length: 1695} {NoTransDecoderORF} {RNA1509_34615} {RNA1310_70158} {RNA815_35660}
10. MligTC455_13157 25 0.51 Mlig455_040736

Neo: -

Age: -

 0.973 - - - - - 0.973 Mlig455_040736 {REF} {Length: 2276} {Pfam: Cysteine rich repeat [PF02363.21, score=20.5]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=90.5, Expect=3e-19]} {Celegans: WBGene00008559, F07H5.8, [Score=65.5, Expect=3e-11]} {RNA1310_28745} {RNA815_44906}
11. MligTC455_40540 101 2.1 Mlig455_049420

Neo: -

Age: -

 0.968 - - - - - 0.968 Mlig455_049420 {REF} {Length: 1518} {RNA1509_51442, RNA1509_56446} {RNA1310_39000.1, RNA1509_51442, RNA1509_56446} {RNA1509_51442, RNA1509_56446, RNA815_20434.1}
12. MligTC455_54262 215 4.48 Mlig455_017618

Neo: Int S/G2/M

Age: -

 WRAP73 0.968 - - - - - 0.968 Mlig455_017618 {REF} {Length: 2138} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=41.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=35.7]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=21.0]} {Human: ENSG00000116213, WRAP73, WD repeat containing, antisense to TP73, [RH, Score=422, Expect=1e-144]} {Mouse: ENSMUSG00000029029, Wrap73, WD repeat containing, antisense to Trp73, [RH, Score=410, Expect=5e-140]} {Smed: dd_Smed_v6_14024_0_1, dd_Smed_v6_14024_0_1, [RH, Score=295, Expect=6e-96]} {RNA1509_16472} {RNA1310_14155.1, RNA1509_16472} {RNA1509_16472, RNA815_5466.1}
13. MligTC455_24665 140 2.92 Mlig455_005982

Neo: Int S/G2/M

Age: Up-Down-Up

 MSTO1 0.965 - - - - - 0.965 Mlig455_005982 {REF} {Length: 3047} {TRANSSPLICED} {Pfam: Misato Segment II tubulin-like domain [PF10644.11, score=73.7]; Tubulin domain [PF14881.8, score=34.9]} {Human: ENSG00000125459, MSTO1, misato 1, mitochondrial distribution and morphology regulator, [Score=108, Expect=1e-24]} {Mouse: ENSMUSG00000068922, Msto1, misato 1, mitochondrial distribution and morphology regulator, [Score=104, Expect=3e-23]} {Dmel: FBgn0020272, mst, misato, [RH, Score=121, Expect=5e-29]} {Smed: dd_Smed_v6_11439_0_1, dd_Smed_v6_11439_0_1, [Score=105, Expect=3e-24]} {RNA1509_26413} {RNA1310_14007.1, RNA1509_26413} {RNA1509_26413, RNA815_5955.1}
14. MligTC455_30076 144 3 Mlig455_013735

Neo: -

Age: -

Region-enriched R2: 4.479/0.01848

 ANKRD50 0.963 - - - - - 0.963 Mlig455_013735 {REF} {Length: 5253} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=152.8]; Ankyrin repeats (many copies) [PF13637.8, score=120.2]; Ankyrin repeats (many copies) [PF13857.8, score=113.6]; Ankyrin repeat [PF13606.8, score=105.9]; Ankyrin repeat [PF00023.32, score=105.3]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=74.7, Expect=1e-12]; ENSG00000029534, ANK1, ankyrin 1, [Score=72.0, Expect=6e-12]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=75.9, Expect=3e-13]; ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=75.1, Expect=5e-13]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=77.8, Expect=5e-14]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=72.8, Expect=1e-12]} {Smed: dd_Smed_v6_21003_0_1, dd_Smed_v6_21003_0_1, [Score=77.8, Expect=3e-14]} {RNA1509_10766, RNA1509_39916, RNA1509_50383} {RNA1310_2826, RNA1509_10766, RNA1509_39916, RNA1509_50383} {RNA1509_10766, RNA1509_39916, RNA1509_50383, RNA815_2448}
15. MligTC455_37764 368 7.66 Mlig455_039134, Mlig455_039210

Neo: -

Age: Down-Up-Up

Region-enriched R2: 2.538/0.01687

 C16orf70 0.961 - - - - - 0.961

Mlig455_039134 {REF} {Length: 2711} {TRANSSPLICED} {Pfam: Uncharacterised protein family (UPF0183) [PF03676.16, score=386.9]} {Human: ENSG00000125149, C16orf70, chromosome 16 open reading frame 70, [RH, Score=327, Expect=4e-108]} {Mouse: ENSMUSG00000031889, D230025D16Rik, RIKEN cDNA D230025D16 gene, [RH, Score=324, Expect=3e-107]} {Dmel: FBgn0035877, CG7083, [RH, Score=325, Expect=1e-107]} {Celegans: WBGene00011344, T01G9.2, UPF0183 protein T01G9.2, [RH, Score=193, Expect=7e-57]} {Smed: dd_Smed_v6_4868_0_1, dd_Smed_v6_4868_0_1, [RH, Score=250, Expect=1e-78]} {RNA1509_25863} {RNA1310_11937.2, RNA1509_25863} {RNA1509_25863, RNA815_4955}

Mlig455_039210 {REF} {Length: 6319} {TRANSSPLICED} {Pfam: Uncharacterised protein family (UPF0183) [PF03676.16, score=336.6]} {Human: ENSG00000125149, C16orf70, chromosome 16 open reading frame 70, [Score=286, Expect=1e-92]} {Mouse: ENSMUSG00000031889, D230025D16Rik, RIKEN cDNA D230025D16 gene, [Score=285, Expect=2e-92]} {Dmel: FBgn0035877, CG7083, [Score=292, Expect=4e-95]} {Celegans: WBGene00011344, T01G9.2, UPF0183 protein T01G9.2, [Score=168, Expect=7e-48]} {Smed: dd_Smed_v6_4868_0_1, dd_Smed_v6_4868_0_1, [Score=213, Expect=1e-64]} {RNA1509_25863} {RNA1310_11937.2} {RNA815_4955}
16. MligTC455_11869 19 0.4 Mlig455_035289

Neo: -

Age: -

 RBM28 0.958 - - - - - 0.958 Mlig455_035289 {REF} {Length: 2091} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=75.2]; Universal stress protein family [PF00582.28, score=71.7]} {Human: ENSG00000106344, RBM28, RNA binding motif protein 28, [RH, Score=170, Expect=2e-44]} {Mouse: ENSMUSG00000029701, Rbm28, RNA binding motif protein 28, [RH, Score=174, Expect=1e-45]} {Dmel: FBgn0260456, CG4806, [RH, Score=113, Expect=7e-26]} {Celegans: WBGene00011043, rbm-28, RNA Binding Motif protein homolog, [RH, Score=135, Expect=3e-33]} {Smed: dd_Smed_v6_3502_0_1, dd_Smed_v6_3502_0_1, [RH, Score=111, Expect=1e-28]} {RNA1509_7413} {RNA1310_20132} {RNA815_19622}
17. MligTC455_26193 305 6.36 Mlig455_024085

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.449

 PEF1 0.955 - - - - - 0.955 Mlig455_024085 {REF} {Length: 2400} {Pfam: EF-hand domain [PF13405.8, score=57.7]; EF hand [PF00036.34, score=54.7]; EF-hand domain pair [PF13499.8, score=52.8]; EF hand [PF13202.8, score=43.0]; EF-hand domain pair [PF13833.8, score=35.0]} {Human: ENSG00000162517, PEF1, penta-EF-hand domain containing 1, [Score=93.6, Expect=7e-22]} {Mouse: ENSMUSG00000028779, Pef1, penta-EF hand domain containing 1, [Score=94.4, Expect=2e-22]} {Dmel: FBgn0033529, CG17765, [Score=97.8, Expect=2e-24]} {Celegans: WBGene00019770, M04F3.4, [Score=84.0, Expect=9e-20]} {Smed: dd_Smed_v6_6190_0_1, dd_Smed_v6_6190_0_1, [Score=96.7, Expect=1e-24]} {RNA1509_8928} {RNA1310_11493} {RNA815_7652.1}
18. MligTC455_36217 9 0.19 Mlig455_062358

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.320

 0.955 - - - - - 0.955 Mlig455_062358 {REF} {Length: 1913} {RNA1509_16981} {RNA1310_7515} {RNA815_26530}
19. MligTC455_40084 79 1.65 Mlig455_046693

Neo: Int S/G2/M

Age: -

 SNAPC3 0.954 - - - - - 0.954 Mlig455_046693 {REF} {Length: 3322} {TRANSSPLICED} {Pfam: snRNA-activating protein complex (SNAPc), subunit 3 [PF12251.10, score=123.0]} {Human: ENSG00000164975, SNAPC3, small nuclear RNA activating complex polypeptide 3, [RH, Score=84.7, Expect=3e-17]} {Mouse: ENSMUSG00000028483, Snapc3, small nuclear RNA activating complex, polypeptide 3, [RH, Score=89.7, Expect=4e-19]} {Celegans: WBGene00021667, snpc-3.2, SNAPc (Small Nuclear RNA Activating Complex) homolog, [RH, Score=70.9, Expect=4e-13]} {Smed: dd_Smed_v6_9421_0_1, dd_Smed_v6_9421_0_1, [RH, Score=120, Expect=2e-30]} {RNA1509_41696} {RNA1310_22781.3, RNA1509_41696} {RNA1509_41696, RNA815_25555}
20. MligTC455_24663 144 3 Mlig455_003946

Neo: Irradiation

Age: -

 MSTO1 0.953 - - - - - 0.953 Mlig455_003946 {REF} {Length: 2430} {TRANSSPLICED} {Pfam: Misato Segment II tubulin-like domain [PF10644.11, score=75.0]; Tubulin domain [PF14881.8, score=35.8]} {Human: ENSG00000125459, MSTO1, misato 1, mitochondrial distribution and morphology regulator, [RH, Score=110, Expect=3e-25]} {Mouse: ENSMUSG00000068922, Msto1, misato 1, mitochondrial distribution and morphology regulator, [RH, Score=106, Expect=8e-24]} {Dmel: FBgn0020272, mst, misato, [RH, Score=122, Expect=3e-29]} {Smed: dd_Smed_v6_11439_0_1, dd_Smed_v6_11439_0_1, [RH, Score=107, Expect=2e-24]} {RNA1509_44476} {RNA1310_14007.2, RNA1509_44476} {RNA1509_44476, RNA815_5955.1}
21. MligTC455_41440 90 1.88 Mlig455_020627

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_020627 {REF} {Length: 1788} {TRANSSPLICED} {Pfam: Centrosomal spindle body, CEP44 [PF15007.8, score=109.1]} {Mouse: ENSMUSG00000038215, Cep44, centrosomal protein 44, [RH, Score=80.1, Expect=6e-16]} {RNA1509_24640} {RNA1310_14511} {RNA815_33168}
22. MligTC455_25466 97 2.02 Mlig455_041572

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_041572 {REF} {Length: 356} {NoTransDecoderORF} {RNA1310_46869} {RNA815_14926.1}
23. MligTC455_26190 164 3.42 Mlig455_036963, Mlig455_069814

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.523

 XIAP 0.952 - - - - - 0.952

Mlig455_036963 {REF} {Length: 2387} {Pfam: Inhibitor of Apoptosis domain [PF00653.23, score=41.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=41.1]; Prokaryotic RING finger family 4 [PF14447.8, score=21.6]} {Human: ENSG00000101966, XIAP, X-linked inhibitor of apoptosis, [Score=79.7, Expect=2e-15]} {Mouse: ENSMUSG00000025860, Xiap, X-linked inhibitor of apoptosis, [Score=78.2, Expect=6e-15]} {Dmel: FBgn0015247, Diap2, Death-associated inhibitor of apoptosis 2, [Score=82.8, Expect=1e-16]} {Smed: dd_Smed_v6_4626_0_2, dd_Smed_v6_4626_0_2, [Score=65.1, Expect=3e-11]} {RNA1509_50002} {RNA1310_7949.1} {RNA815_4630}

Mlig455_069814 {REF} {Length: 7657} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.7]; Inhibitor of Apoptosis domain [PF00653.23, score=37.3]; Prokaryotic RING finger family 4 [PF14447.8, score=20.8]} {Human: ENSG00000101966, XIAP, X-linked inhibitor of apoptosis, [Score=79.7, Expect=5e-15]} {Mouse: ENSMUSG00000025860, Xiap, X-linked inhibitor of apoptosis, [Score=78.2, Expect=9e-15]} {Dmel: FBgn0015247, Diap2, Death-associated inhibitor of apoptosis 2, [Score=82.8, Expect=2e-16]} {Smed: dd_Smed_v6_4626_0_1, dd_Smed_v6_4626_0_1, [Score=62.4, Expect=3e-10]} {RNA1509_28705} {RNA1310_8706.1} {RNA815_4630}
24. MligTC455_29396 146 3.03 Mlig455_042661

Neo: -

Age: -

 ZDHHC5 0.952 - - - - - 0.952 Mlig455_042661 {REF} {Length: 4594} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=125.3]} {Human: ENSG00000156599, ZDHHC5, zinc finger DHHC-type containing 5, [RH, Score=260, Expect=1e-78]} {Mouse: ENSMUSG00000034075, Zdhhc5, zinc finger, DHHC domain containing 5, [RH, Score=260, Expect=6e-79]} {Dmel: FBgn0085478, CG34449, [RH, Score=241, Expect=6e-70]} {Celegans: WBGene00012718, dhhc-8, Palmitoyltransferase, [Score=201, Expect=3e-59]} {Smed: dd_Smed_v6_9159_0_1, dd_Smed_v6_9159_0_1, [Score=231, Expect=3e-69]} {RNA1509_5313} {RNA1310_1658.1} {RNA815_3536}
25. MligTC455_22944 70 1.45 Mlig455_047814

Neo: -

Age: Up-Down-Down

 0.951 - - - - - 0.951 Mlig455_047814 {REF} {Length: 840} {NoTransDecoderORF} {RNA1310_40399} {RNA815_34779.1}
26. MligTC455_08381 23 0.47 Mlig455_002943

Neo: -

Age: -

Region-enriched R2: 6.789/0.00727

 0.95 - - - - - 0.950 Mlig455_002943 {REF} {Length: 944} {NoTransDecoderORF} {RNA1310_97351} {RNA815_52261}
27. MligTC455_13578 31 0.64 Mlig455_033426

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_033426 {REF} {Length: 1654} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_46373} {RNA1310_27600.1} {RNA815_28149}
28. MligTC455_18721 85 1.77 Mlig455_044140

Neo: -

Age: -

 ANKUB1 0.95 - - - - - 0.950 Mlig455_044140 {REF} {Length: 2661} {Pfam: Ubiquitin family [PF00240.25, score=36.3]} {Human: ENSG00000206199, ANKUB1, ankyrin repeat and ubiquitin domain containing 1, [RH, Score=258, Expect=2e-77]} {Mouse: ENSMUSG00000074591, Ankub1, ankrin repeat and ubiquitin domain containing 1, [RH, Score=258, Expect=5e-78]} {Smed: dd_Smed_v6_9027_0_1, dd_Smed_v6_9027_0_1, [RH, Score=510, Expect=2e-174]} {RNA1509_23349} {RNA1310_10366.1} {RNA815_3711.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA