M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31025

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31025 671 13.98 Mlig455_069425

Neo: Irradiation

Age: Up-Down-Up

 Mlig455_069425 {REF} {Length: 3546} {RNA1509_24158} {RNA1310_3578.1} {RNA815_12643}

Cumulative graph for MligTC455_31025

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.4 4.06 0.17968 0.80829
RegionR2 0.939 4.06 0.25863 0.63954
RegionR3 0.066 4.06 0.92640 1.00000
RegionR4 -1.362 4.06 0.11368 0.33457
RegionR5 -1.258 4.06 0.08769 0.27881
RegionR6 0.649 4.06 0.36469 0.94599
RegionR7 1.513 4.06 0.02149 0.27328
RegionR8 1.854 4.06 0.01298 0.21949

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.867 4.06 0.43074 1.00000
RegenerationR2 -1.295 4.06 0.14652 0.57847
RegenerationR3 -0.432 4.06 0.63702 0.92361
RegenerationR4 -0.051 4.06 0.95483 1.00000
RegenerationR5 -0.32 4.06 0.72512 0.96131
RegenerationR6 -1.285 4.06 0.16413 0.49383
RegenerationBL -0.967 4.06 0.28706 0.64877
RegenerationTP -1.369 4.06 0.16168 0.59054


Genes with expression patterns similar to MligTC455_31025

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31025 671 13.98 Mlig455_069425

Neo: Irradiation

Age: Up-Down-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_069425 {REF} {Length: 3546} {RNA1509_24158} {RNA1310_3578.1} {RNA815_12643}
2. MligTC455_31027 5397 112.45 Mlig455_000268, Mlig455_008140, Mlig455_008667, Mlig455_012771, Mlig455_026381, Mlig455_031689, Mlig455_035722, Mlig455_048786, Mlig455_049532, Mlig455_070679

Neo: -

Age: Down-Up-Down

 4.919 0.999 1.000 0.994 0.987 0.939 -

Mlig455_000268 {REF} {Length: 2015} {TRANSSPLICED} {RNA1509_24158} {RNA1310_3578.1} {RNA815_12643}

Mlig455_008140 {REF} {Length: 551} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}

Mlig455_008667 {REF} {Length: 124} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.2} {RNA815_24034}

Mlig455_012771 {REF} {Length: 551} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}

Mlig455_026381 {REF} {Length: 837} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}

Mlig455_031689 {REF} {Length: 546} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}

Mlig455_035722 {REF} {Length: 1800} {RNA1509_24158} {RNA1310_3578.1} {RNA815_12643}

Mlig455_048786 {REF} {Length: 546} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}

Mlig455_049532 {REF} {Length: 1891} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}

Mlig455_070679 {REF} {Length: 837} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}
3. MligTC455_31024 469 9.77 Mlig455_008666

Neo: -

Age: -

 2.755 0.999 1.000 - - - 0.756 Mlig455_008666 {REF} {Length: 399} {NoTransDecoderORF} {RNA1509_24158} {RNA1310_3578.1} {RNA815_24034}
4. MligTC455_47340 1613 33.6 Mlig455_067342

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.480

 1.801 0.844 0.957 - - - - Mlig455_067342 {REF} {Length: 1430} {RNA1509_11932} {RNA1310_46975.1, RNA1509_11932} {RNA1509_11932, RNA815_50642}
5. MligTC455_30659 7438 154.97 Mlig455_008135, Mlig455_012766, Mlig455_021205, Mlig455_026385, Mlig455_035726, Mlig455_035727, Mlig455_067397, Mlig455_070688, Mlig455_070937

Neo: -

Age: Down-Up-Down

Region-enriched R8: 1.647/0.04332

 KMT5A 1.716 0.745 0.971 - - - -

Mlig455_008135 {REF} {Length: 3237} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_012766 {REF} {Length: 4660} {TRANSSPLICED} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_021205 {REF} {Length: 3235} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_026385 {REF} {Length: 2839} {TRANSSPLICED} {RNA1509_44078} {RNA1310_33930} {RNA815_15022}

Mlig455_035726 {REF} {Length: 1020} {Pfam: SET domain [PF00856.30, score=45.1]} {Human: ENSG00000183955, KMT5A, lysine methyltransferase 5A, [Score=62.4, Expect=2e-10]} {Mouse: ENSMUSG00000049327, Kmt5a, lysine methyltransferase 5A, [Score=64.7, Expect=2e-11]} {Dmel: FBgn0011474, PR-Set7, PR/SET domain containing protein 7, [Score=76.6, Expect=3e-15]} {Celegans: WBGene00004781, set-1, Histone-lysine N-methyltransferase set-1, [Score=77.0, Expect=2e-16]} {Smed: dd_Smed_v6_5677_0_1, dd_Smed_v6_5677_0_1, [Score=78.2, Expect=2e-16]} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_035727 {REF} {Length: 2924} {TRANSSPLICED} {RNA1509_44078} {RNA1310_31019} {RNA815_15022}

Mlig455_067397 {REF} {Length: 2535} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_070688 {REF} {Length: 2537} {RNA1509_2996} {RNA1310_18007, RNA1509_2996} {RNA1509_2996, RNA815_15022}

Mlig455_070937 {REF} {Length: 2433} {RNA1509_2996, RNA1509_31638} {RNA1310_18007, RNA1509_31638} {RNA1509_31638, RNA815_15022}
6. MligTC455_30656 531 11.06 Mlig455_000273

Neo: -

Age: -

Region-enriched R8: 2.263/0.01198

 1.711 0.743 0.968 - - - - Mlig455_000273 {REF} {Length: 356} {NoTransDecoderORF} {RNA1509_2996} {RNA1310_69787} {RNA815_15022}
7. MligTC455_43662 816 17 Mlig455_063378

Neo: -

Age: Down-Down-Up

Region-enriched R8: 2.636/0.02219
Region-enriched R7: 2.486/0.00831

 0.963 - 0.963 - - - - Mlig455_063378 {REF} {Length: 897} {Celegans: WBGene00206488, ZK757.10, [RH, Score=52.8, Expect=4e-09]} {Smed: dd_Smed_v6_72220_0_1, dd_Smed_v6_72220_0_1, [RH, Score=48.5, Expect=5e-08]} {RNA1509_37549} {RNA1310_56775, RNA1509_37549} {RNA1509_37549, RNA815_29387.1}
8. MligTC455_39045 45 0.95 Mlig455_059020

Neo: -

Age: -

 FOXB1 0.962 - 0.962 - - - - Mlig455_059020 {REF} {Length: 2652} {Pfam: Forkhead domain [PF00250.20, score=118.1]} {Human: ENSG00000171956, FOXB1, forkhead box B1, [Score=117, Expect=4e-29]; ENSG00000129514, FOXA1, forkhead box A1, [Score=116, Expect=9e-28]; ENSG00000170122, FOXD4, forkhead box D4, [Score=115, Expect=7e-28]; ENSG00000176678, FOXL1, forkhead box L1, [Score=115, Expect=4e-28]; ENSG00000198815, FOXJ3, forkhead box J3, [Score=113, Expect=4e-27]; ENSG00000170608, FOXA3, forkhead box A3, [Score=112, Expect=5e-27]} {Mouse: ENSMUSG00000059246, Foxb1, forkhead box B1, [Score=117, Expect=3e-29]; ENSMUSG00000097084, Foxl1, forkhead box L1, [Score=115, Expect=2e-28]; ENSMUSG00000035451, Foxa1, forkhead box A1, [Score=115, Expect=1e-27]; ENSMUSG00000032998, Foxj3, forkhead box J3, [Score=112, Expect=2e-26]; ENSMUSG00000040891, Foxa3, forkhead box A3, [Score=112, Expect=3e-27]} {Dmel: FBgn0039937, fd102C, forkhead domain 102C, [RH, Score=225, Expect=4e-67]} {Celegans: WBGene00001442, fkh-10, ForKHead transcription factor family, [RH, Score=169, Expect=3e-50]} {Smed: dd_Smed_v6_50245_0_1, dd_Smed_v6_50245_0_1, [RH, Score=121, Expect=4e-32]} {RNA1310_103435} {RNA815_51831}
9. MligTC455_45546 2857 59.52 Mlig455_000034, Mlig455_023497, Mlig455_042422, Mlig455_050366, Mlig455_059624

Neo: -

Age: Down-Up-Down

 0.962 - 0.962 - - - -

Mlig455_000034 {REF} {Length: 356} {TRANSSPLICED} {RNA1509_43103} {RNA1310_27460} {RNA815_26067.1}

Mlig455_023497 {REF} {Length: 471} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_43103} {RNA1310_45665} {RNA815_26067.1}

Mlig455_042422 {REF} {Length: 357} {TRANSSPLICED} {RNA1509_43103} {RNA1310_45665} {RNA815_26067.1}

Mlig455_050366 {REF} {Length: 357} {TRANSSPLICED} {RNA1509_43103} {RNA1310_45665} {RNA815_26067.1}

Mlig455_059624 {REF} {Length: 931} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_14354, RNA1509_35446, RNA1509_43103} {RNA1310_27460, RNA1509_14354, RNA1509_35446, RNA1509_43103} {RNA1509_14354, RNA1509_35446, RNA1509_43103, RNA815_26067.1}
10. MligTC455_07421 19136 398.66 Mlig455_029662

Neo: -

Age: Down-Up-Up

Region-specific R8: 3.646

Region-enriched R8: 3.196/0.00000
Region-enriched R7: 1.280/0.00593

 SLC25A24 0.96 - 0.960 - - - - Mlig455_029662 {REF} {Length: 528} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=52.9]; EF hand [PF13202.8, score=51.2]; EF-hand domain pair [PF13499.8, score=51.0]; EF-hand domain [PF13405.8, score=41.8]; EF-hand domain pair [PF13833.8, score=41.6]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=26.1]; Family of unknown function (DUF5766) [PF19070.2, score=19.0]} {Human: ENSG00000085491, SLC25A24, solute carrier family 25 member 24, [Score=48.9, Expect=5e-08]; ENSG00000284468, SLC25A24, solute carrier family 25 member 24, [Score=48.9, Expect=5e-08]; ENSG00000114854, TNNC1, troponin C1, slow skeletal and cardiac type, [Score=48.1, Expect=6e-08]} {Mouse: ENSMUSG00000091898, Tnnc1, troponin C, cardiac/slow skeletal, [Score=48.5, Expect=3e-08]; ENSMUSG00000057738, Sptan1, spectrin alpha, non-erythrocytic 1, [Score=46.2, Expect=4e-07]} {Dmel: FBgn0250789, alpha-Spec, alpha Spectrin, [Score=47.0, Expect=1e-07]} {Smed: dd_Smed_v6_11874_0_1, dd_Smed_v6_11874_0_1, [Score=45.4, Expect=3e-07]} {RNA1509_10992, RNA1509_2519, RNA1509_679} {RNA1310_66965, RNA1509_10992, RNA1509_2519, RNA1509_679} {RNA1509_10992, RNA1509_2519, RNA1509_679, RNA815_31569.1}
11. MligTC455_48622 901 18.77 Mlig455_009572

Neo: -

Age: Up-Down-Up

Regeneration-downregulated BL: -2.932

Regeneration-depleted BL: -2.932

 0.953 - 0.953 - - - - Mlig455_009572 {REF} {Length: 969} {NoTransDecoderORF} {RNA1509_48527} {RNA1310_11094} {RNA815_18039.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA