M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31073

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31073 3239 67.48 Mlig455_052826

Neo: Irradiation

Age: logFC(26M/2M)=0.322

Region-enriched R4: 1.585/0.00022
Region-enriched R5: 1.327/0.00026

Regeneration-upregulated BL: 1.380

Regeneration-enriched BL: 1.380

 SET Mlig455_052826 {REF} {Length: 1794} {Pfam: Nucleosome assembly protein (NAP) [PF00956.20, score=118.7]} {Human: ENSG00000119335, SET, SET nuclear proto-oncogene, [RH, Score=280, Expect=2e-94]; ENSG00000230667, SETSIP, SET-like protein, [RH, Score=266, Expect=5e-89]} {Mouse: ENSMUSG00000054766, Set, SET nuclear oncogene, [RH, Score=280, Expect=8e-95]} {Dmel: FBgn0014879, Set, [RH, Score=220, Expect=2e-71]} {Celegans: WBGene00005007, spr-2, Suppressor of presenilin-2, [RH, Score=165, Expect=1e-49]} {Smed: dd_Smed_v6_393_0_1, dd_Smed_v6_393_0_1, [RH, Score=219, Expect=1e-71]} {RNA1509_558} {RNA1310_13639} {RNA815_4883}

Cumulative graph for MligTC455_31073

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.552 6.179 0.00872 0.27605
RegionR2 -0.597 6.179 0.15931 0.49957
RegionR3 0.32 6.179 0.34104 0.87773
RegionR4 1.585 6.179 0.00001 0.00022
RegionR5 1.327 6.179 0.00001 0.00026
RegionR6 0.519 6.179 0.12426 0.64189
RegionR7 0.009 6.179 0.98039 1.00000
RegionR8 -0.611 6.179 0.26899 0.89192

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.506 6.179 0.02486 0.59587
RegenerationR2 0.754 6.179 0.03318 0.30000
RegenerationR3 1.082 6.179 0.00321 0.10073
RegenerationR4 0.547 6.179 0.13250 0.55043
RegenerationR5 0.937 6.179 0.00669 0.14907
RegenerationR6 1.304 6.179 0.00030 0.01725
RegenerationBL 1.38 6.179 0.00008 0.00378 Specific for BL: 1.380
RegenerationTP 1.512 6.179 0.00018 0.01695


Genes with expression patterns similar to MligTC455_31073

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31073 3239 67.48 Mlig455_052826

Neo: Irradiation

Age: logFC(26M/2M)=0.322

Region-enriched R4: 1.585/0.00022
Region-enriched R5: 1.327/0.00026

Regeneration-upregulated BL: 1.380

Regeneration-enriched BL: 1.380

 SET 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_052826 {REF} {Length: 1794} {Pfam: Nucleosome assembly protein (NAP) [PF00956.20, score=118.7]} {Human: ENSG00000119335, SET, SET nuclear proto-oncogene, [RH, Score=280, Expect=2e-94]; ENSG00000230667, SETSIP, SET-like protein, [RH, Score=266, Expect=5e-89]} {Mouse: ENSMUSG00000054766, Set, SET nuclear oncogene, [RH, Score=280, Expect=8e-95]} {Dmel: FBgn0014879, Set, [RH, Score=220, Expect=2e-71]} {Celegans: WBGene00005007, spr-2, Suppressor of presenilin-2, [RH, Score=165, Expect=1e-49]} {Smed: dd_Smed_v6_393_0_1, dd_Smed_v6_393_0_1, [RH, Score=219, Expect=1e-71]} {RNA1509_558} {RNA1310_13639} {RNA815_4883}
2. MligTC455_31072 3326 69.29 Mlig455_049682

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.558/0.00007
Region-enriched R5: 1.086/0.00160

Regeneration-upregulated BL: 1.302

Regeneration-enriched BL: 1.302

 SET 5.685 0.948 0.974 0.860 0.997 0.983 0.923 Mlig455_049682 {REF} {Length: 1835} {Pfam: Nucleosome assembly protein (NAP) [PF00956.20, score=118.7]} {Human: ENSG00000119335, SET, SET nuclear proto-oncogene, [RH, Score=280, Expect=2e-94]; ENSG00000230667, SETSIP, SET-like protein, [RH, Score=266, Expect=5e-89]} {Mouse: ENSMUSG00000054766, Set, SET nuclear oncogene, [RH, Score=280, Expect=8e-95]} {Dmel: FBgn0014879, Set, [RH, Score=220, Expect=2e-71]} {Celegans: WBGene00005007, spr-2, Suppressor of presenilin-2, [RH, Score=165, Expect=1e-49]} {Smed: dd_Smed_v6_393_0_1, dd_Smed_v6_393_0_1, [RH, Score=219, Expect=1e-71]} {RNA1509_20038, RNA1509_35724, RNA1509_4869, RNA1509_558, RNA1509_5607} {RNA1310_13639, RNA1509_20038, RNA1509_35724, RNA1509_4869, RNA1509_558, RNA1509_5607} {RNA1509_20038, RNA1509_35724, RNA1509_4869, RNA1509_558, RNA1509_5607, RNA815_4883}
3. MligTC455_31071 7346 153.04 Mlig455_049657

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.405

Region-enriched R5: 1.127/0.00000

Regeneration-upregulated TP: 1.115

Regeneration-enriched TP: 1.115

 SET 3.587 0.891 0.797 - 0.958 0.941 - Mlig455_049657 {REF} {Length: 1751} {Pfam: Nucleosome assembly protein (NAP) [PF00956.20, score=118.7]} {Human: ENSG00000119335, SET, SET nuclear proto-oncogene, [RH, Score=280, Expect=1e-94]; ENSG00000230667, SETSIP, SET-like protein, [RH, Score=267, Expect=2e-89]} {Mouse: ENSMUSG00000054766, Set, SET nuclear oncogene, [RH, Score=282, Expect=2e-95]} {Dmel: FBgn0014879, Set, [RH, Score=221, Expect=1e-71]} {Celegans: WBGene00005007, spr-2, Suppressor of presenilin-2, [RH, Score=165, Expect=1e-49]} {Smed: dd_Smed_v6_393_0_1, dd_Smed_v6_393_0_1, [RH, Score=219, Expect=1e-71]} {RNA1509_20038} {RNA1310_13639} {RNA815_4883}
4. MligTC455_49293 7685 160.1 Mlig455_066535

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.476

Regeneration-upregulated BL: 1.053

Regeneration-enriched BL: 1.053

 1.789 0.815 - - 0.974 - - Mlig455_066535 {REF} {Length: 2900} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=31.1]} {Celegans: WBGene00004315, rbd-1, RBD (RNA binding domain) protein, [Score=49.7, Expect=5e-06]} {Smed: dd_Smed_v6_9127_0_1, dd_Smed_v6_9127_0_1, [Score=62.4, Expect=5e-10]} {RNA1509_11326, RNA1509_28717, RNA1509_628} {RNA1310_6015.1, RNA1509_11326, RNA1509_28717, RNA1509_628} {RNA1509_11326, RNA1509_28717, RNA1509_628, RNA815_4437.1}
5. MligTC455_43844 6305 131.36 Mlig455_054801, Mlig455_054895

Neo: Neoblast

Age: -

 PSMD14 1.665 0.709 - - - 0.956 -

Mlig455_054801 {REF} {Length: 2038} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=112.1]; Maintenance of mitochondrial structure and function [PF13012.8, score=54.5]; Prokaryotic homologs of the JAB domain [PF14464.8, score=25.7]} {Human: ENSG00000115233, PSMD14, proteasome 26S subunit, non-ATPase 14, [RH, Score=513, Expect=0.0]} {Mouse: ENSMUSG00000026914, Psmd14, proteasome (prosome, macropain) 26S subunit, non-ATPase, 14, [RH, Score=513, Expect=0.0]} {Dmel: FBgn0028694, Rpn11, Regulatory particle non-ATPase 11, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00004467, rpn-11, 26S proteasome non-ATPase regulatory subunit 14, [RH, Score=453, Expect=7e-162]} {Smed: dd_Smed_v6_2126_0_1, dd_Smed_v6_2126_0_1, [RH, Score=521, Expect=0.0]} {RNA1509_2523, RNA1509_6626} {RNA1310_22197.1, RNA1509_2523, RNA1509_6626} {RNA1509_2523, RNA1509_6626, RNA815_10026}

Mlig455_054895 {REF} {Length: 2461} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=112.1]; Maintenance of mitochondrial structure and function [PF13012.8, score=54.5]; Prokaryotic homologs of the JAB domain [PF14464.8, score=25.7]} {Human: ENSG00000115233, PSMD14, proteasome 26S subunit, non-ATPase 14, [RH, Score=513, Expect=0.0]} {Mouse: ENSMUSG00000026914, Psmd14, proteasome (prosome, macropain) 26S subunit, non-ATPase, 14, [RH, Score=513, Expect=0.0]} {Dmel: FBgn0028694, Rpn11, Regulatory particle non-ATPase 11, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00004467, rpn-11, 26S proteasome non-ATPase regulatory subunit 14, [RH, Score=454, Expect=6e-162]} {Smed: dd_Smed_v6_2126_0_1, dd_Smed_v6_2126_0_1, [RH, Score=520, Expect=0.0]} {RNA1509_2523} {RNA1310_22197.1} {RNA815_10026}
6. MligTC455_27982 2224 46.32 Mlig455_014695, Mlig455_014738

Neo: -

Age: -

Region-enriched R3: 1.878/0.03979

 SLC9A3R2 0.964 - - - - 0.964 -

Mlig455_014695 {REF} {Length: 1932} {Pfam: PDZ domain [PF00595.26, score=39.6]; PDZ domain [PF17820.3, score=26.5]; PDZ domain [PF13180.8, score=25.5]} {Human: ENSG00000065054, SLC9A3R2, SLC9A3 regulator 2, [RH, Score=94.7, Expect=8e-22]} {Mouse: ENSMUSG00000020733, Slc9a3r1, solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1, [RH, Score=96.7, Expect=2e-22]; ENSMUSG00000002504, Slc9a3r2, solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2, [RH, Score=93.6, Expect=1e-21]} {Dmel: FBgn0010620, CG10939, [Score=87.0, Expect=1e-19]} {Celegans: WBGene00006438, nrfl-1, NHERF (Mammalian Na/H Exchange Regulatory Factor) Like, [Score=89.7, Expect=5e-20]} {Smed: dd_Smed_v6_3039_0_1, dd_Smed_v6_3039_0_1, [Score=107, Expect=2e-28]} {RNA1509_5277, RNA1509_8845} {RNA1310_17362, RNA1509_5277, RNA1509_8845} {RNA1509_5277, RNA1509_8845, RNA815_22754.1}

Mlig455_014738 {REF} {Length: 1929} {Pfam: PDZ domain [PF00595.26, score=41.4]; PDZ domain [PF17820.3, score=26.4]; PDZ domain [PF13180.8, score=23.8]} {Human: ENSG00000065054, SLC9A3R2, SLC9A3 regulator 2, [RH, Score=97.4, Expect=7e-23]} {Mouse: ENSMUSG00000002504, Slc9a3r2, solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2, [RH, Score=96.7, Expect=1e-22]; ENSMUSG00000020733, Slc9a3r1, solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1, [RH, Score=95.9, Expect=3e-22]} {Dmel: FBgn0010620, CG10939, [Score=89.7, Expect=2e-20]} {Celegans: WBGene00006438, nrfl-1, NHERF (Mammalian Na/H Exchange Regulatory Factor) Like, [Score=92.4, Expect=5e-21]} {Smed: dd_Smed_v6_3039_0_1, dd_Smed_v6_3039_0_1, [Score=110, Expect=3e-29]} {RNA1509_39084} {RNA1310_17362, RNA1509_39084} {RNA1509_39084, RNA815_22754.1}
7. MligTC455_50240 919 19.14 Mlig455_027856

Neo: -

Age: -

Region-enriched R5: 1.437/0.00000

 0.957 - - - - - 0.957 Mlig455_027856 {REF} {Length: 2968} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=120.8]} {Dmel: FBgn0033502, CG12910, [RH, Score=107, Expect=1e-24]} {Celegans: WBGene00015870, C17A2.2, [RH, Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=123, Expect=1e-30]} {RNA1509_43884, RNA1509_56545, RNA1509_8290} {RNA1310_3360.1, RNA1509_43884, RNA1509_56545, RNA1509_8290} {RNA1509_43884, RNA1509_56545, RNA1509_8290, RNA815_7043}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA