TomoSeq data search

Data search

Results for MligTC455_31346

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_31346	353	7.35	Mlig455_006886	Neo: - Age: -	RTL1	Mlig455_006886 {REF} {Length: 2156} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=55.8, Expect=2e-07]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=94.7, Expect=3e-20]} {RNA1509_33330} {RNA1310_5975.2} {RNA815_11487}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_31346

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-5.017	3.373	0.27668	0.92767
RegionR2	0.418	3.373	0.65291	0.98734
RegionR3	1.452	3.373	0.04180	0.35664
RegionR4	1.642	3.373	0.04912	0.19036
RegionR5	0.652	3.373	0.45880	0.82094
RegionR6	0.633	3.373	0.49450	1.00000
RegionR7	-0.962	3.373	0.98640	1.00000
RegionR8	1.182	3.373	0.33100	0.96414

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	4.656	3.373	0.39059	1.00000
RegenerationR2	0.441	3.373	0.33525	0.77108
RegenerationR3	0.188	3.373	0.71454	0.95314
RegenerationR4	0.312	3.373	0.56478	0.89903
RegenerationR5	0.694	3.373	0.16139	0.58538
RegenerationR6	1.015	3.373	0.05746	0.30070
RegenerationBL	1.424	3.373	0.03016	0.19366
RegenerationTP	0.502	3.373	0.56498	0.94152

Genes with expression patterns similar to MligTC455_31346

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31346	353	7.35	Mlig455_006886	Neo: - Age: -	RTL1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_006886 {REF} {Length: 2156} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=55.8, Expect=2e-07]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=94.7, Expect=3e-20]} {RNA1509_33330} {RNA1310_5975.2} {RNA815_11487}
2.	MligTC455_28549	1066	22.21	Mlig455_022620, Mlig455_063617	Neo: - Age: -	IFT122	0.951	-	0.951	-	-	-	-	Mlig455_022620 {REF} {Length: 4291} {Pfam: WD domain, G-beta repeat [PF00400.34, score=54.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=47.3]; WD40-like domain [PF17005.7, score=27.7]; Region in Clathrin and VPS [PF00637.22, score=22.4]; Tetratricopeptide repeat [PF13176.8, score=19.6]} {Human: ENSG00000163913, IFT122, intraflagellar transport 122, [RH, Score=1418, Expect=0.0]} {Mouse: ENSMUSG00000030323, Ift122, intraflagellar transport 122, [RH, Score=1440, Expect=0.0]} {Dmel: FBgn0265102, Oseg1, Outer segment 1, [RH, Score=1013, Expect=0.0]} {Celegans: WBGene00000906, daf-10, Intraflagellar transport protein 122 homolog, [RH, Score=914, Expect=0.0]} {Smed: dd_Smed_v6_11912_0_1, dd_Smed_v6_11912_0_1, [RH, Score=1303, Expect=0.0]} {RNA1509_2905} {RNA1310_2034.1, RNA1509_2905} {RNA1509_2905, RNA815_532} Mlig455_063617 {REF} {Length: 4336} {Pfam: WD domain, G-beta repeat [PF00400.34, score=54.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=47.1]; WD40-like domain [PF17005.7, score=29.2]; Region in Clathrin and VPS [PF00637.22, score=22.4]; Tetratricopeptide repeat [PF13176.8, score=19.6]} {Human: ENSG00000163913, IFT122, intraflagellar transport 122, [RH, Score=1420, Expect=0.0]} {Mouse: ENSMUSG00000030323, Ift122, intraflagellar transport 122, [RH, Score=1439, Expect=0.0]} {Dmel: FBgn0265102, Oseg1, Outer segment 1, [RH, Score=1014, Expect=0.0]} {Celegans: WBGene00000906, daf-10, Intraflagellar transport protein 122 homolog, [RH, Score=916, Expect=0.0]} {Smed: dd_Smed_v6_11912_0_1, dd_Smed_v6_11912_0_1, [RH, Score=1303, Expect=0.0]} {RNA1509_2905} {RNA1310_2034.1} {RNA815_532}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_31346

353

7.35

Mlig455_006886

Neo: -

Age: -

RTL1

1.000

MligTC455_28549

1066

22.21

Mlig455_022620, Mlig455_063617

Neo: -

Age: -

IFT122

0.951

Mlig455_022620 {REF} {Length: 4291} {Pfam: WD domain, G-beta repeat [PF00400.34, score=54.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=47.3]; WD40-like domain [PF17005.7, score=27.7]; Region in Clathrin and VPS [PF00637.22, score=22.4]; Tetratricopeptide repeat [PF13176.8, score=19.6]} {Human: ENSG00000163913, IFT122, intraflagellar transport 122, [RH, Score=1418, Expect=0.0]} {Mouse: ENSMUSG00000030323, Ift122, intraflagellar transport 122, [RH, Score=1440, Expect=0.0]} {Dmel: FBgn0265102, Oseg1, Outer segment 1, [RH, Score=1013, Expect=0.0]} {Celegans: WBGene00000906, daf-10, Intraflagellar transport protein 122 homolog, [RH, Score=914, Expect=0.0]} {Smed: dd_Smed_v6_11912_0_1, dd_Smed_v6_11912_0_1, [RH, Score=1303, Expect=0.0]} {RNA1509_2905} {RNA1310_2034.1, RNA1509_2905} {RNA1509_2905, RNA815_532}

Mlig455_063617 {REF} {Length: 4336} {Pfam: WD domain, G-beta repeat [PF00400.34, score=54.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=47.1]; WD40-like domain [PF17005.7, score=29.2]; Region in Clathrin and VPS [PF00637.22, score=22.4]; Tetratricopeptide repeat [PF13176.8, score=19.6]} {Human: ENSG00000163913, IFT122, intraflagellar transport 122, [RH, Score=1420, Expect=0.0]} {Mouse: ENSMUSG00000030323, Ift122, intraflagellar transport 122, [RH, Score=1439, Expect=0.0]} {Dmel: FBgn0265102, Oseg1, Outer segment 1, [RH, Score=1014, Expect=0.0]} {Celegans: WBGene00000906, daf-10, Intraflagellar transport protein 122 homolog, [RH, Score=916, Expect=0.0]} {Smed: dd_Smed_v6_11912_0_1, dd_Smed_v6_11912_0_1, [RH, Score=1303, Expect=0.0]} {RNA1509_2905} {RNA1310_2034.1} {RNA815_532}