TomoSeq data search

Data search

Results for MligTC455_31402

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_31402	3087	64.32	Mlig455_019549	Neo: - Age: -		Mlig455_019549 {REF} {Length: 2030} {RNA1509_2287} {RNA1310_10535.2} {RNA815_4786.2}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_31402

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.705	6.147	0.27810	0.92883
RegionR2	-0.365	6.147	0.33218	0.72394
RegionR3	-0.199	6.147	0.53341	1.00000
RegionR4	0.022	6.147	0.95196	1.00000
RegionR5	-0.288	6.147	0.35712	0.70824
RegionR6	0.285	6.147	0.35844	0.94244
RegionR7	0.362	6.147	0.28162	0.91482
RegionR8	0.889	6.147	0.01331	0.22218

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.279	6.147	0.74014	1.00000
RegenerationR2	0.138	6.147	0.72416	0.96367
RegenerationR3	0.085	6.147	0.83330	0.99165
RegenerationR4	-0.091	6.147	0.82482	0.99552
RegenerationR5	0.193	6.147	0.62947	0.92240
RegenerationR6	-0.237	6.147	0.54973	0.83879
RegenerationBL	-0.589	6.147	0.12099	0.41267
RegenerationTP	0.065	6.147	0.86687	1.00000

Genes with expression patterns similar to MligTC455_31402

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31402	3087	64.32	Mlig455_019549	Neo: - Age: -		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_019549 {REF} {Length: 2030} {RNA1509_2287} {RNA1310_10535.2} {RNA815_4786.2}
2.	MligTC455_39394	2368	49.33	Mlig455_041723, Mlig455_041724, Mlig455_061413	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.728 Region-enriched R7: 2.572/0.04354	RNF138	0.976	-	-	-	-	0.976	-	Mlig455_041723 {REF} {Length: 1602} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.0]; Ring finger domain [PF13639.8, score=22.3]; zinc-RING finger domain [PF14634.8, score=21.8]; RING-H2 zinc finger domain [PF12678.9, score=20.7]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000032850, Rnft2, ring finger protein, transmembrane 2, [Score=47.0, Expect=5e-06]; ENSMUSG00000020521, Rnft1, ring finger protein, transmembrane 1, [Score=45.8, Expect=1e-05]} {Dmel: FBgn0265257, CG44271, [Score=45.8, Expect=2e-06]} {RNA1509_21994, RNA1509_25107} {RNA1310_38668, RNA1509_21994, RNA1509_25107} {RNA1509_21994, RNA1509_25107, RNA815_20898.1} Mlig455_041724 {REF} {Length: 1316} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.0]; Ring finger domain [PF13639.8, score=22.3]; zinc-RING finger domain [PF14634.8, score=21.8]; RING-H2 zinc finger domain [PF12678.9, score=20.7]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000032850, Rnft2, ring finger protein, transmembrane 2, [Score=47.4, Expect=5e-06]; ENSMUSG00000020521, Rnft1, ring finger protein, transmembrane 1, [Score=45.8, Expect=1e-05]} {Dmel: FBgn0265257, CG44271, [RH, Score=45.8, Expect=2e-06]} {RNA1509_25107, RNA1509_58798} {RNA1310_38668, RNA1509_58798} {RNA1509_58798, RNA815_20898.1} Mlig455_061413 {REF} {Length: 1228} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=24.4]; Ring finger domain [PF13639.8, score=22.5]; zinc-RING finger domain [PF14634.8, score=22.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.7]; RING-H2 zinc finger domain [PF12678.9, score=20.8]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=46.6, Expect=8e-06]} {Dmel: FBgn0265257, CG44271, [RH, Score=47.8, Expect=3e-07]} {RNA1509_25107} {RNA1310_38668} {RNA815_20898.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_31402

3087

64.32

Mlig455_019549

Neo: -

Age: -

1.000

Mlig455_019549 {REF} {Length: 2030} {RNA1509_2287} {RNA1310_10535.2} {RNA815_4786.2}

MligTC455_39394

2368

49.33

Mlig455_041723, Mlig455_041724, Mlig455_061413

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.728

Region-enriched R7: 2.572/0.04354

RNF138

0.976

Mlig455_041723 {REF} {Length: 1602} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.0]; Ring finger domain [PF13639.8, score=22.3]; zinc-RING finger domain [PF14634.8, score=21.8]; RING-H2 zinc finger domain [PF12678.9, score=20.7]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000032850, Rnft2, ring finger protein, transmembrane 2, [Score=47.0, Expect=5e-06]; ENSMUSG00000020521, Rnft1, ring finger protein, transmembrane 1, [Score=45.8, Expect=1e-05]} {Dmel: FBgn0265257, CG44271, [Score=45.8, Expect=2e-06]} {RNA1509_21994, RNA1509_25107} {RNA1310_38668, RNA1509_21994, RNA1509_25107} {RNA1509_21994, RNA1509_25107, RNA815_20898.1}

Mlig455_041724 {REF} {Length: 1316} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=23.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.0]; Ring finger domain [PF13639.8, score=22.3]; zinc-RING finger domain [PF14634.8, score=21.8]; RING-H2 zinc finger domain [PF12678.9, score=20.7]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000032850, Rnft2, ring finger protein, transmembrane 2, [Score=47.4, Expect=5e-06]; ENSMUSG00000020521, Rnft1, ring finger protein, transmembrane 1, [Score=45.8, Expect=1e-05]} {Dmel: FBgn0265257, CG44271, [RH, Score=45.8, Expect=2e-06]} {RNA1509_25107, RNA1509_58798} {RNA1310_38668, RNA1509_58798} {RNA1509_58798, RNA815_20898.1}

Mlig455_061413 {REF} {Length: 1228} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=34.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=24.4]; Ring finger domain [PF13639.8, score=22.5]; zinc-RING finger domain [PF14634.8, score=22.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.7]; RING-H2 zinc finger domain [PF12678.9, score=20.8]} {Human: ENSG00000134758, RNF138, ring finger protein 138, [RH, Score=46.6, Expect=8e-06]} {Dmel: FBgn0265257, CG44271, [RH, Score=47.8, Expect=3e-07]} {RNA1509_25107} {RNA1310_38668} {RNA815_20898.1}