TomoSeq data search

Data search

Results for MligTC455_31412

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_31412

394

8.21

Mlig455_001037, Mlig455_064192, Mlig455_064253

Neo: -

Age: -

SLC24A4

Mlig455_001037 {REF} {Length: 4748} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=55.4]} {Human: ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=164, Expect=6e-43]} {Mouse: ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=164, Expect=5e-43]} {Dmel: FBgn0037238, CG1090, [Score=163, Expect=5e-43]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=135, Expect=1e-33]} {Smed: dd_Smed_v6_7121_0_1, dd_Smed_v6_7121_0_1, [Score=159, Expect=3e-42]} {RNA1310_7874} {RNA815_17579.1}

Mlig455_064192 {REF} {Length: 5986} {Human: ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=162, Expect=3e-43]; ENSG00000185052, SLC24A3, solute carrier family 24 member 3, [Score=156, Expect=5e-41]} {Mouse: ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=164, Expect=5e-44]; ENSMUSG00000063873, Slc24a3, solute carrier family 24 (sodium/potassium/calcium exchanger), member 3, [Score=156, Expect=3e-41]} {Dmel: FBgn0037238, CG1090, [Score=160, Expect=1e-42]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=132, Expect=5e-33]} {Smed: dd_Smed_v6_7121_0_1, dd_Smed_v6_7121_0_1, [Score=156, Expect=4e-42]} {RNA1509_29170} {RNA1310_7874} {RNA815_17579.1}

Mlig455_064253 {REF} {Length: 2319} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=77.9]} {Human: ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=192, Expect=4e-57]} {Mouse: ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=194, Expect=2e-57]} {Dmel: FBgn0265767, zyd, zydeco, [Score=172, Expect=1e-49]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=145, Expect=6e-39]} {Smed: dd_Smed_v6_17208_0_2, dd_Smed_v6_17208_0_2, [Score=212, Expect=3e-65]} {RNA1509_54924} {RNA1310_7874} {RNA815_17579.1}

Cumulative graph for MligTC455_31412

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.437	3.248	0.21949	0.86227
RegionR2	1.51	3.248	0.12426	0.43684
RegionR3	0.685	3.248	0.47217	0.97747
RegionR4	0.388	3.248	0.70438	0.99213
RegionR5	-0.703	3.248	0.97284	1.00000
RegionR6	0.807	3.248	0.39590	0.96909
RegionR7	1.333	3.248	0.16135	0.74224
RegionR8	1.416	3.248	0.17137	0.74667

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	5.9	3.248	0.22505	0.95604
RegenerationR2	-0.447	3.248	0.49887	0.87110
RegenerationR3	-0.618	3.248	0.41224	0.81027
RegenerationR4	0.139	3.248	0.86999	1.00000
RegenerationR5	0.131	3.248	0.87723	1.00000
RegenerationR6	0.172	3.248	0.82067	0.98723
RegenerationBL	-4.245	3.248	0.00160	0.03128
RegenerationTP	-0.762	3.248	0.35658	0.79721

Genes with expression patterns similar to MligTC455_31412

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31412	394	8.21	Mlig455_001037, Mlig455_064192, Mlig455_064253	Neo: - Age: -	SLC24A4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_001037 {REF} {Length: 4748} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=55.4]} {Human: ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=164, Expect=6e-43]} {Mouse: ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=164, Expect=5e-43]} {Dmel: FBgn0037238, CG1090, [Score=163, Expect=5e-43]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=135, Expect=1e-33]} {Smed: dd_Smed_v6_7121_0_1, dd_Smed_v6_7121_0_1, [Score=159, Expect=3e-42]} {RNA1310_7874} {RNA815_17579.1} Mlig455_064192 {REF} {Length: 5986} {Human: ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=162, Expect=3e-43]; ENSG00000185052, SLC24A3, solute carrier family 24 member 3, [Score=156, Expect=5e-41]} {Mouse: ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=164, Expect=5e-44]; ENSMUSG00000063873, Slc24a3, solute carrier family 24 (sodium/potassium/calcium exchanger), member 3, [Score=156, Expect=3e-41]} {Dmel: FBgn0037238, CG1090, [Score=160, Expect=1e-42]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=132, Expect=5e-33]} {Smed: dd_Smed_v6_7121_0_1, dd_Smed_v6_7121_0_1, [Score=156, Expect=4e-42]} {RNA1509_29170} {RNA1310_7874} {RNA815_17579.1} Mlig455_064253 {REF} {Length: 2319} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=77.9]} {Human: ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=192, Expect=4e-57]} {Mouse: ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=194, Expect=2e-57]} {Dmel: FBgn0265767, zyd, zydeco, [Score=172, Expect=1e-49]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=145, Expect=6e-39]} {Smed: dd_Smed_v6_17208_0_2, dd_Smed_v6_17208_0_2, [Score=212, Expect=3e-65]} {RNA1509_54924} {RNA1310_7874} {RNA815_17579.1}
2.	MligTC455_31774	176	3.67	Mlig455_026213, Mlig455_026264	Neo: - Age: logFC(26M/2M)=-0.400	TRIM2, TRIM3	2.533	-	-	0.792	0.782	0.959	-	Mlig455_026213 {REF} {Length: 2329} {Pfam: NHL repeat [PF01436.23, score=21.9]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=57.0, Expect=7e-08]; ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=55.1, Expect=3e-07]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=56.6, Expect=5e-08]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=55.1, Expect=2e-07]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.1} Mlig455_026264 {REF} {Length: 2271} {Pfam: NHL repeat [PF01436.23, score=32.6]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=61.6, Expect=2e-09]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=60.5, Expect=5e-09]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=60.8, Expect=3e-09]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=60.5, Expect=4e-09]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.1}
3.	MligTC455_45201	166	3.46	Mlig455_024614	Neo: - Age: -	DLG5	2.418	0.759	0.700	0.959	-	-	-	Mlig455_024614 {REF} {Length: 9018} {Pfam: PDZ domain [PF00595.26, score=124.9]; PDZ domain [PF17820.3, score=96.7]; PDZ domain [PF13180.8, score=51.9]} {Human: ENSG00000151208, DLG5, discs large MAGUK scaffold protein 5, [RH, Score=234, Expect=2e-61]; ENSG00000274429, DLG5, discs large MAGUK scaffold protein 5, [RH, Score=234, Expect=2e-61]} {Mouse: ENSMUSG00000021782, Dlg5, discs large MAGUK scaffold protein 5, [RH, Score=221, Expect=2e-57]} {Dmel: FBgn0032363, Dlg5, Discs large 5, [RH, Score=162, Expect=1e-39]} {Celegans: WBGene00013683, zoo-1, ZO-1 (Zonula Occludens tight junctional protein) Ortholog, [Score=75.5, Expect=3e-13]} {Smed: dd_Smed_v6_7374_0_1, dd_Smed_v6_7374_0_1, [Score=55.5, Expect=3e-07]} {RNA1509_10377} {RNA1310_678} {RNA815_15135}
4.	MligTC455_31405	1547	32.24	Mlig455_021385	Neo: - Age: Up-Down-Up		1.835	-	-	-	-	0.864	0.971	Mlig455_021385 {REF} {Length: 3364} {Pfam: Laminin EGF domain [PF00053.26, score=19.5]} {RNA1509_23420, RNA1509_24108, RNA1509_25322} {RNA1310_22595.1, RNA1509_23420, RNA1509_24108, RNA1509_25322} {RNA1509_23420, RNA1509_24108, RNA1509_25322, RNA815_9317}
5.	MligTC455_52083	972	20.26	Mlig455_009237, Mlig455_009643	Neo: - Age: Up-Down-Up Region-enriched R8: 2.031/0.00909	FAT3	1.793	0.983	-	-	-	-	0.810	Mlig455_009237 {REF} {Length: 9383} {Pfam: Cadherin domain [PF00028.19, score=291.4]; Laminin G domain [PF02210.26, score=96.4]; Cadherin cytoplasmic region [PF01049.19, score=79.9]; Laminin G domain [PF00054.25, score=77.7]; Cadherin-like [PF16184.7, score=57.2]; Cadherin-like [PF08266.14, score=20.1]} {Human: ENSG00000282908, FAT3, FAT atypical cadherin 3, [Score=286, Expect=3e-76]; ENSG00000165323, FAT3, FAT atypical cadherin 3, [Score=286, Expect=3e-76]} {Mouse: ENSMUSG00000074505, Fat3, FAT atypical cadherin 3, [Score=280, Expect=1e-74]; ENSMUSG00000070047, Fat1, FAT atypical cadherin 1, [Score=279, Expect=3e-74]} {Dmel: FBgn0015609, CadN, Cadherin-N, [RH, Score=716, Expect=0.0]} {Celegans: WBGene00001980, hmr-1, Cadherin-related hmr-1, [RH, Score=478, Expect=2e-135]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=175, Expect=4e-43]} {RNA1509_5439} {RNA1310_149} {RNA815_168} Mlig455_009643 {REF} {Length: 9400} {Pfam: Cadherin domain [PF00028.19, score=300.2]; Laminin G domain [PF02210.26, score=97.0]; Cadherin cytoplasmic region [PF01049.19, score=80.9]; Laminin G domain [PF00054.25, score=78.3]; Cadherin-like [PF16184.7, score=54.5]; Cadherin-like [PF08266.14, score=22.1]} {Human: ENSG00000165323, FAT3, FAT atypical cadherin 3, [Score=280, Expect=2e-74]; ENSG00000282908, FAT3, FAT atypical cadherin 3, [Score=280, Expect=2e-74]} {Mouse: ENSMUSG00000074505, Fat3, FAT atypical cadherin 3, [Score=275, Expect=3e-73]} {Dmel: FBgn0015609, CadN, Cadherin-N, [RH, Score=720, Expect=0.0]} {Celegans: WBGene00001980, hmr-1, Cadherin-related hmr-1, [RH, Score=468, Expect=2e-132]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=169, Expect=1e-41]} {RNA1509_5439} {RNA1310_149, RNA1509_5439} {RNA1509_5439, RNA815_168}
6.	MligTC455_21755	70	1.47	Mlig455_021213	Neo: - Age: -		1.777	-	-	0.952	0.825	-	-	Mlig455_021213 {REF} {Length: 4215} {Pfam: F5/8 type C domain [PF00754.27, score=55.5]} {RNA1509_2515} {RNA1310_33166} {RNA815_14716}
7.	MligTC455_11717	89	1.85	Mlig455_061662, Mlig455_061663	Neo: - Age: -		1.768	-	-	0.808	0.960	-	-	Mlig455_061662 {REF} {Length: 1100} {RNA1509_13494} {RNA1310_72946} {RNA815_44318} Mlig455_061663 {REF} {Length: 1440} {RNA1310_86013} {RNA815_53527}
8.	MligTC455_38694	664	13.83	Mlig455_061326, Mlig455_061328, Mlig455_061349, Mlig455_062678	Neo: - Age: -		1.716	-	0.758	-	-	-	0.958	Mlig455_061326 {REF} {Length: 3483} {RNA1509_3355} {RNA1310_1054.1} {RNA815_10697} Mlig455_061328 {REF} {Length: 8215} {RNA1509_26151, RNA1509_3355} {RNA1310_937.1, RNA1509_26151, RNA1509_3355} {RNA1509_26151, RNA1509_3355, RNA815_580} Mlig455_061349 {REF} {Length: 5009} {RNA1509_3355} {RNA1310_1054.1} {RNA815_10697} Mlig455_062678 {REF} {Length: 8249} {RNA1509_26151} {RNA1310_937.1} {RNA815_580}
9.	MligTC455_41039	820	17.08	Mlig455_012731	Neo: - Age: -	FLRT1	1.667	-	-	-	-	0.712	0.955	Mlig455_012731 {REF} {Length: 2045} {Pfam: Leucine rich repeat [PF13855.8, score=60.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=47.8]; Leucine-rich repeat [PF14580.8, score=22.6]} {Human: ENSG00000126500, FLRT1, fibronectin leucine rich transmembrane protein 1, [Score=67.4, Expect=3e-11]; ENSG00000187122, SLIT1, slit guidance ligand 1, [Score=67.0, Expect=6e-11]; ENSG00000011465, DCN, decorin, [Score=66.2, Expect=4e-11]; ENSG00000184347, SLIT3, slit guidance ligand 3, [Score=65.5, Expect=2e-10]} {Mouse: ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=67.0, Expect=4e-11]; ENSMUSG00000025020, Slit1, slit guidance ligand 1, [Score=66.6, Expect=6e-11]; ENSMUSG00000047787, Flrt1, fibronectin leucine rich transmembrane protein 1, [Score=66.2, Expect=6e-11]} {Dmel: FBgn0036995, atk, artichoke, [Score=64.7, Expect=2e-10]} {Celegans: WBGene00020649, sma-10, Leucine-rich repeats and immunoglobulin-like domains protein sma-10, [Score=72.4, Expect=4e-13]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=64.3, Expect=1e-10]} {RNA1509_45627, RNA1509_8353} {RNA1310_14213, RNA1509_45627, RNA1509_8353} {RNA1509_45627, RNA1509_8353, RNA815_5583}
10.	MligTC455_40802	690	14.37	Mlig455_058344	Neo: - Age: -		0.97	-	-	-	0.970	-	-	Mlig455_058344 {REF} {Length: 1602} {RNA1509_24787} {RNA1310_5189, RNA1509_24787} {RNA1509_24787, RNA815_3770}
11.	MligTC455_45919	242	5.04	Mlig455_040207	Neo: - Age: -	PLSCR1	0.966	0.966	-	-	-	-	-	Mlig455_040207 {REF} {Length: 2652} {Pfam: Scramblase [PF03803.17, score=245.9]} {Human: ENSG00000188313, PLSCR1, phospholipid scramblase 1, [Score=241, Expect=1e-77]} {Mouse: ENSMUSG00000032369, Plscr1, phospholipid scramblase 1, [Score=231, Expect=8e-74]; ENSMUSG00000032372, Plscr2, phospholipid scramblase 2, [Score=227, Expect=2e-72]} {Dmel: FBgn0052056, scramb1, scramblase 1, [RH, Score=241, Expect=2e-76]} {Celegans: WBGene00014200, scrm-2, Phospholipid scramblase, [Score=191, Expect=3e-59]} {Smed: dd_Smed_v6_16813_0_1, dd_Smed_v6_16813_0_1, [RH, Score=297, Expect=6e-100]} {RNA1509_25839} {RNA1310_11207.1} {RNA815_13677}
12.	MligTC455_13531	143	2.98	Mlig455_065648	Neo: - Age: Up-Up-Down	SLC4A10	0.965	-	-	-	0.965	-	-	Mlig455_065648 {REF} {Length: 4478} {Pfam: HCO3- transporter family [PF00955.23, score=692.3]; Band 3 cytoplasmic domain [PF07565.15, score=135.4]} {Human: ENSG00000144290, SLC4A10, solute carrier family 4 member 10, [Score=735, Expect=0.0]; ENSG00000033867, SLC4A7, solute carrier family 4 member 7, [Score=727, Expect=0.0]; ENSG00000050438, SLC4A8, solute carrier family 4 member 8, [Score=721, Expect=0.0]; ENSG00000080493, SLC4A4, solute carrier family 4 member 4, [Score=714, Expect=0.0]} {Mouse: ENSMUSG00000026904, Slc4a10, solute carrier family 4, sodium bicarbonate cotransporter-like, member 10, [Score=733, Expect=0.0]; ENSMUSG00000023032, Slc4a8, solute carrier family 4 (anion exchanger), member 8, [Score=724, Expect=0.0]; ENSMUSG00000021733, Slc4a7, solute carrier family 4, sodium bicarbonate cotransporter, member 7, [Score=718, Expect=0.0]; ENSMUSG00000060961, Slc4a4, solute carrier family 4 (anion exchanger), member 4, [Score=717, Expect=0.0]} {Dmel: FBgn0259111, Ndae1, Na[+]-driven anion exchanger 1, [Score=751, Expect=0.0]} {Celegans: WBGene00009920, abts-1, Anion exchange protein, [Score=668, Expect=0.0]} {Smed: dd_Smed_v6_3003_0_1, dd_Smed_v6_3003_0_1, [Score=801, Expect=0.0]} {RNA1509_3893} {RNA1310_2467} {RNA815_1366}
13.	MligTC455_19932	461	9.61	Mlig455_019596, Mlig455_059100	Neo: - Age: -		0.953	-	-	-	0.953	-	-	Mlig455_019596 {REF} {Length: 3118} {TRANSSPLICED} {RNA1509_20980} {RNA1310_30814.1} {RNA815_36360} Mlig455_059100 {REF} {Length: 3656} {TRANSSPLICED} {RNA1509_20980, RNA1509_28513} {RNA1310_30814.1, RNA1509_28513} {RNA1509_28513, RNA815_36360}
14.	MligTC455_31883	26	0.55	Mlig455_027645	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_027645 {REF} {Length: 5225} {TRANSSPLICED} {RNA1509_47605} {RNA1310_622.1, RNA1509_47605} {RNA1509_47605, RNA815_2514.1}

Berezikov Lab - 2020-2021 © ERIBA