M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31896

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31896 122 2.54 Mlig455_038389

Neo: -

Age: Up-Down-Down

 RIMBP2 Mlig455_038389 {REF} {Length: 4946} {Pfam: Variant SH3 domain [PF07653.19, score=68.0]; Variant SH3 domain [PF14604.8, score=66.2]; SH3 domain [PF00018.30, score=31.2]; Fibronectin type III domain [PF00041.23, score=23.1]} {Human: ENSG00000060709, RIMBP2, RIMS binding protein 2, [Score=175, Expect=3e-44]} {Mouse: ENSMUSG00000029420, Rimbp2, RIMS binding protein 2, [Score=179, Expect=1e-45]} {Dmel: FBgn0262483, Rbp, RIM-binding protein, [Score=197, Expect=4e-51]} {Celegans: WBGene00006513, rimb-1, RIM Binding protein, [Score=135, Expect=5e-32]} {Smed: dd_Smed_v6_9824_0_1, dd_Smed_v6_9824_0_1, [Score=102, Expect=8e-22]} {RNA1509_12204, RNA1509_50962} {RNA1310_2550.1, RNA1509_12204, RNA1509_50962} {RNA1509_12204, RNA1509_50962, RNA815_706}

Cumulative graph for MligTC455_31896

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.527 2.198 0.52898 1.00000
RegionR2 2.002 2.198 0.05328 0.27632
RegionR3 0.833 2.198 0.39151 0.92180
RegionR4 1.403 2.198 0.19673 0.47524
RegionR5 0.682 2.198 0.46718 0.82949
RegionR6 0.315 2.198 0.72125 1.00000
RegionR7 -2.249 2.198 0.99965 1.00000
RegionR8 0.542 2.198 0.68641 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.285 2.198 0.99995 1.00000
RegenerationR2 0.353 2.198 0.46563 0.85559
RegenerationR3 0.166 2.198 0.81685 0.98650
RegenerationR4 0.378 2.198 0.62323 0.92167
RegenerationR5 0.206 2.198 0.74683 0.97084
RegenerationR6 1.149 2.198 0.13626 0.45285
RegenerationBL 1.678 2.198 0.18500 0.51570
RegenerationTP 2.416 2.198 0.05075 0.36942


Genes with expression patterns similar to MligTC455_31896

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31896 122 2.54 Mlig455_038389

Neo: -

Age: Up-Down-Down

 RIMBP2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_038389 {REF} {Length: 4946} {Pfam: Variant SH3 domain [PF07653.19, score=68.0]; Variant SH3 domain [PF14604.8, score=66.2]; SH3 domain [PF00018.30, score=31.2]; Fibronectin type III domain [PF00041.23, score=23.1]} {Human: ENSG00000060709, RIMBP2, RIMS binding protein 2, [Score=175, Expect=3e-44]} {Mouse: ENSMUSG00000029420, Rimbp2, RIMS binding protein 2, [Score=179, Expect=1e-45]} {Dmel: FBgn0262483, Rbp, RIM-binding protein, [Score=197, Expect=4e-51]} {Celegans: WBGene00006513, rimb-1, RIM Binding protein, [Score=135, Expect=5e-32]} {Smed: dd_Smed_v6_9824_0_1, dd_Smed_v6_9824_0_1, [Score=102, Expect=8e-22]} {RNA1509_12204, RNA1509_50962} {RNA1310_2550.1, RNA1509_12204, RNA1509_50962} {RNA1509_12204, RNA1509_50962, RNA815_706}
2. MligTC455_22150 189 3.94 Mlig455_054947

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=2.071

 XDH 3.221 0.726 - 0.965 0.758 - 0.772 Mlig455_054947 {REF} {Length: 5481} {Pfam: Molybdopterin-binding domain of aldehyde dehydrogenase [PF02738.20, score=346.4]; [2Fe-2S] binding domain [PF01799.22, score=95.7]; FAD binding domain in molybdopterin dehydrogenase [PF00941.23, score=91.5]; CO dehydrogenase flavoprotein C-terminal domain [PF03450.19, score=51.5]; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain [PF01315.24, score=47.3]; 2Fe-2S iron-sulfur cluster binding domain [PF00111.29, score=25.1]} {Human: ENSG00000158125, XDH, xanthine dehydrogenase, [Score=476, Expect=9e-146]} {Mouse: ENSMUSG00000024066, Xdh, xanthine dehydrogenase, [Score=471, Expect=4e-144]; ENSMUSG00000079554, Aox2, aldehyde oxidase 2, [Score=457, Expect=7e-139]; ENSMUSG00000063558, Aox1, aldehyde oxidase 1, [Score=456, Expect=1e-138]; ENSMUSG00000038242, Aox4, aldehyde oxidase 4, [Score=449, Expect=5e-136]} {Dmel: FBgn0267408, AOX1, Aldehyde oxidase 1, [Score=640, Expect=0.0]} {Celegans: WBGene00010083, xhd-1, [Score=485, Expect=1e-149]} {RNA1509_325, RNA1509_38160} {RNA1310_1603.1, RNA1509_38160} {RNA1509_38160, RNA815_224.2}
3. MligTC455_28549 1066 22.21 Mlig455_022620, Mlig455_063617

Neo: -

Age: -

 IFT122 2.668 - 0.882 0.836 - - 0.950

Mlig455_022620 {REF} {Length: 4291} {Pfam: WD domain, G-beta repeat [PF00400.34, score=54.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=47.3]; WD40-like domain [PF17005.7, score=27.7]; Region in Clathrin and VPS [PF00637.22, score=22.4]; Tetratricopeptide repeat [PF13176.8, score=19.6]} {Human: ENSG00000163913, IFT122, intraflagellar transport 122, [RH, Score=1418, Expect=0.0]} {Mouse: ENSMUSG00000030323, Ift122, intraflagellar transport 122, [RH, Score=1440, Expect=0.0]} {Dmel: FBgn0265102, Oseg1, Outer segment 1, [RH, Score=1013, Expect=0.0]} {Celegans: WBGene00000906, daf-10, Intraflagellar transport protein 122 homolog, [RH, Score=914, Expect=0.0]} {Smed: dd_Smed_v6_11912_0_1, dd_Smed_v6_11912_0_1, [RH, Score=1303, Expect=0.0]} {RNA1509_2905} {RNA1310_2034.1, RNA1509_2905} {RNA1509_2905, RNA815_532}

Mlig455_063617 {REF} {Length: 4336} {Pfam: WD domain, G-beta repeat [PF00400.34, score=54.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=47.1]; WD40-like domain [PF17005.7, score=29.2]; Region in Clathrin and VPS [PF00637.22, score=22.4]; Tetratricopeptide repeat [PF13176.8, score=19.6]} {Human: ENSG00000163913, IFT122, intraflagellar transport 122, [RH, Score=1420, Expect=0.0]} {Mouse: ENSMUSG00000030323, Ift122, intraflagellar transport 122, [RH, Score=1439, Expect=0.0]} {Dmel: FBgn0265102, Oseg1, Outer segment 1, [RH, Score=1014, Expect=0.0]} {Celegans: WBGene00000906, daf-10, Intraflagellar transport protein 122 homolog, [RH, Score=916, Expect=0.0]} {Smed: dd_Smed_v6_11912_0_1, dd_Smed_v6_11912_0_1, [RH, Score=1303, Expect=0.0]} {RNA1509_2905} {RNA1310_2034.1} {RNA815_532}
4. MligTC455_27391 400 8.33 Mlig455_025302

Neo: -

Age: -

 2.372 - - 0.714 0.706 - 0.952 Mlig455_025302 {REF} {Length: 5004} {RNA1509_12762} {RNA1310_3434.1} {RNA815_1693}
5. MligTC455_15112 80 1.67 Mlig455_038148

Neo: -

Age: -

Region-enriched R2: 4.134/0.00646
Region-enriched R7: 3.497/0.03308

 1.745 - - 0.963 - - 0.782 Mlig455_038148 {REF} {Length: 836}
6. MligTC455_43353 428 8.91 Mlig455_003476

Neo: -

Age: -

 1.736 - - - 0.774 - 0.962 Mlig455_003476 {REF} {Length: 2887} {Smed: dd_Smed_v6_9265_0_1, dd_Smed_v6_9265_0_1, [Score=108, Expect=2e-26]} {RNA1509_49114, RNA1509_59769} {RNA1310_21358, RNA1509_49114, RNA1509_59769} {RNA1509_49114, RNA1509_59769, RNA815_21652}
7. MligTC455_15492 69 1.44 Mlig455_022488

Neo: -

Age: Down-Up-Up

 1.734 - - 0.955 0.779 - - Mlig455_022488 {REF} {Length: 1351} {RNA1310_26051} {RNA815_10966}
8. MligTC455_16059 116 2.42 Mlig455_044225

Neo: -

Age: -

 CFAP157 1.701 - - 0.951 0.750 - - Mlig455_044225 {REF} {Length: 2823} {Pfam: Siphovirus Gp157 [PF05565.13, score=19.9]} {Human: ENSG00000160401, CFAP157, cilia and flagella associated protein 157, [Score=107, Expect=3e-24]} {Mouse: ENSMUSG00000038987, Cfap157, cilia and flagella associated protein 157, [Score=110, Expect=4e-25]} {Dmel: FBgn0036962, CG17122, [Score=67.4, Expect=2e-11]} {Smed: dd_Smed_v6_11523_0_1, dd_Smed_v6_11523_0_1, [Score=62.0, Expect=4e-10]} {RNA1509_42697} {RNA1310_10711} {RNA815_24261}
9. MligTC455_12180 107 2.23 Mlig455_038554, Mlig455_052202, Mlig455_053449

Neo: -

Age: logFC(26M/2M)=-0.655

Region-enriched R2: 5.717/0.01573

 CNGA3 1.685 - - 0.963 - - 0.722

Mlig455_038554 {REF} {Length: 2866} {Pfam: C-terminal leucine zipper domain of cyclic nucleotide-gated channels [PF16526.7, score=75.9]; Cyclic nucleotide-binding domain [PF00027.31, score=69.1]; Ion transport protein [PF00520.33, score=68.6]} {Human: ENSG00000144191, CNGA3, cyclic nucleotide gated channel alpha 3, [RH, Score=650, Expect=0.0]} {Mouse: ENSMUSG00000026114, Cnga3, cyclic nucleotide gated channel alpha 3, [RH, Score=644, Expect=0.0]} {Dmel: FBgn0261612, CngA, Cyclic nucleotide-gated ion channel subunit A, [RH, Score=607, Expect=0.0]} {Celegans: WBGene00006526, tax-4, Cyclic nucleotide-gated cation channel, [RH, Score=563, Expect=0.0]} {Smed: dd_Smed_v6_22398_0_1, dd_Smed_v6_22398_0_1, [RH, Score=669, Expect=0.0]} {RNA1310_22950} {RNA815_16119}

Mlig455_052202 {REF} {Length: 3203} {Pfam: C-terminal leucine zipper domain of cyclic nucleotide-gated channels [PF16526.7, score=76.1]; Cyclic nucleotide-binding domain [PF00027.31, score=69.1]; Ion transport protein [PF00520.33, score=68.2]} {Human: ENSG00000144191, CNGA3, cyclic nucleotide gated channel alpha 3, [RH, Score=650, Expect=0.0]} {Mouse: ENSMUSG00000026114, Cnga3, cyclic nucleotide gated channel alpha 3, [RH, Score=644, Expect=0.0]} {Dmel: FBgn0261612, CngA, Cyclic nucleotide-gated ion channel subunit A, [RH, Score=605, Expect=0.0]} {Celegans: WBGene00006526, tax-4, Cyclic nucleotide-gated cation channel, [RH, Score=563, Expect=0.0]} {Smed: dd_Smed_v6_22398_0_1, dd_Smed_v6_22398_0_1, [RH, Score=667, Expect=0.0]} {RNA1310_22950} {RNA815_16119}

Mlig455_053449 {REF} {Length: 991} {Pfam: C-terminal leucine zipper domain of cyclic nucleotide-gated channels [PF16526.7, score=79.9]; Cyclic nucleotide-binding domain [PF00027.31, score=29.1]} {Human: ENSG00000144191, CNGA3, cyclic nucleotide gated channel alpha 3, [Score=171, Expect=7e-50]} {Mouse: ENSMUSG00000026114, Cnga3, cyclic nucleotide gated channel alpha 3, [Score=161, Expect=2e-46]; ENSMUSG00000067220, Cnga1, cyclic nucleotide gated channel alpha 1, [Score=155, Expect=4e-44]} {Dmel: FBgn0261612, CngA, Cyclic nucleotide-gated ion channel subunit A, [Score=148, Expect=1e-41]} {Celegans: WBGene00006526, tax-4, Cyclic nucleotide-gated cation channel, [Score=149, Expect=3e-42]} {Smed: dd_Smed_v6_22398_0_1, dd_Smed_v6_22398_0_1, [Score=155, Expect=8e-45]} {RNA1310_61700} {RNA815_16119}
10. MligTC455_27627 225 4.69 Mlig455_065807

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.382

 HEYL 0.973 - - - - - 0.973 Mlig455_065807 {REF} {Length: 1800} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=45.1]; Hairy Orange [PF07527.15, score=20.8]} {Human: ENSG00000163909, HEYL, hes related family bHLH transcription factor with YRPW motif-like, [Score=85.9, Expect=2e-18]; ENSG00000135547, HEY2, hes related family bHLH transcription factor with YRPW motif 2, [Score=85.5, Expect=2e-18]} {Mouse: ENSMUSG00000019789, Hey2, hairy/enhancer-of-split related with YRPW motif 2, [Score=86.3, Expect=2e-18]; ENSMUSG00000032744, Heyl, hairy/enhancer-of-split related with YRPW motif-like, [Score=85.5, Expect=2e-18]} {Dmel: FBgn0259938, cwo, clockwork orange, [RH, Score=84.0, Expect=2e-17]} {Smed: dd_Smed_v6_22479_0_1, dd_Smed_v6_22479_0_1, [Score=70.9, Expect=9e-14]} {RNA1509_35089} {RNA1310_373, RNA1509_35089} {RNA1509_35089, RNA815_5586}
11. MligTC455_52099 92 1.92 Mlig455_021391

Neo: -

Age: -

 0.969 - - 0.969 - - - Mlig455_021391 {REF} {Length: 1039} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=97.1]} {Dmel: FBgn0034583, CG10527, [Score=75.9, Expect=1e-16]} {Smed: dd_Smed_v6_766_0_1, dd_Smed_v6_766_0_1, [Score=121, Expect=8e-36]} {RNA1310_43030} {RNA815_25924}
12. MligTC455_35731 23 0.48 Mlig455_032510

Neo: -

Age: -

 WSCD2 0.96 - - 0.960 - - - Mlig455_032510 {REF} {Length: 1394} {Pfam: WSC domain [PF01822.21, score=44.7]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=54.3, Expect=4e-08]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=50.1, Expect=7e-07]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=57.8, Expect=1e-09]} {RNA1310_109959}
13. MligTC455_49447 105 2.2 Mlig455_027882

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.491

 PRKCZ 0.953 - - 0.953 - - - Mlig455_027882 {REF} {Length: 2617} {Pfam: Protein kinase domain [PF00069.27, score=120.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=83.0]; Kinase-like [PF14531.8, score=25.0]} {Human: ENSG00000067606, PRKCZ, protein kinase C zeta, [Score=89.0, Expect=3e-18]; ENSG00000065675, PRKCQ, protein kinase C theta, [Score=88.2, Expect=5e-18]; ENSG00000163558, PRKCI, protein kinase C iota, [Score=88.2, Expect=4e-18]; ENSG00000027075, PRKCH, protein kinase C eta, [Score=87.8, Expect=6e-18]; ENSG00000108443, RPS6KB1, ribosomal protein S6 kinase B1, [Score=87.8, Expect=5e-18]; ENSG00000117676, RPS6KA1, ribosomal protein S6 kinase A1, [Score=86.3, Expect=2e-17]; ENSG00000281877, RPS6KA1, ribosomal protein S6 kinase A1, [Score=86.3, Expect=2e-17]; ENSG00000171132, PRKCE, protein kinase C epsilon, [Score=85.9, Expect=4e-17]} {Mouse: ENSMUSG00000021108, Prkch, protein kinase C, eta, [Score=88.6, Expect=3e-18]; ENSMUSG00000029053, Prkcz, protein kinase C, zeta, [Score=88.2, Expect=3e-18]; ENSMUSG00000037643, Prkci, protein kinase C, iota, [Score=87.8, Expect=4e-18]; ENSMUSG00000020516, Rps6kb1, ribosomal protein S6 kinase, polypeptide 1, [Score=87.4, Expect=5e-18]; ENSMUSG00000025665, Rps6ka6, ribosomal protein S6 kinase polypeptide 6, [Score=85.9, Expect=3e-17]; ENSMUSG00000116203, Rps6ka6, ribosomal protein S6 kinase polypeptide 6, [Score=85.9, Expect=3e-17]; ENSMUSG00000003644, Rps6ka1, ribosomal protein S6 kinase polypeptide 1, [Score=85.5, Expect=3e-17]; ENSMUSG00000045038, Prkce, protein kinase C, epsilon, [Score=85.1, Expect=5e-17]; ENSMUSG00000026778, Prkcq, protein kinase C, theta, [Score=84.3, Expect=7e-17]; ENSMUSG00000019699, Akt3, thymoma viral proto-oncogene 3, [Score=84.3, Expect=5e-17]} {Dmel: FBgn0003093, Pkc98E, Protein C kinase 98E, [Score=87.0, Expect=6e-18]} {Celegans: WBGene00004032, pkc-1, Protein kinase C-like 1B, [Score=85.1, Expect=2e-17]} {Smed: dd_Smed_v6_8010_0_1, dd_Smed_v6_8010_0_1, [Score=88.6, Expect=1e-18]} {RNA1509_20079, RNA1509_52166} {RNA1310_18713, RNA1509_20079, RNA1509_52166} {RNA1509_20079, RNA1509_52166, RNA815_7871}
14. MligTC455_50741 80 1.66 Mlig455_028260

Neo: -

Age: logFC(26M/2M)=-0.458

Region-enriched R2: 5.649/0.02620

 SFRP5 0.952 - - 0.952 - - - Mlig455_028260 {REF} {Length: 2580} {Pfam: Fz domain [PF01392.24, score=93.7]} {Human: ENSG00000120057, SFRP5, secreted frizzled related protein 5, [RH, Score=160, Expect=6e-45]} {Mouse: ENSMUSG00000018822, Sfrp5, secreted frizzled-related sequence protein 5, [RH, Score=159, Expect=2e-44]} {Dmel: FBgn0027342, fz4, frizzled 4, [Score=100, Expect=4e-22]} {Celegans: WBGene00022242, sfrp-1, Secreted Frizzled-Related Protein, [RH, Score=162, Expect=3e-46]} {Smed: dd_Smed_v6_13985_0_1, dd_Smed_v6_13985_0_1, [RH, Score=165, Expect=7e-47]} {RNA1509_19129} {RNA1310_15120, RNA1509_19129} {RNA1509_19129, RNA815_29178}
15. MligTC455_21502 36 0.75 Mlig455_018529

Neo: -

Age: -

Region-enriched R2: 5.380/0.01311

 0.95 - - 0.950 - - - Mlig455_018529 {REF} {Length: 1004} {Pfam: Fas apoptotic inhibitory molecule (FAIM1) [PF06905.15, score=43.7]} {Mouse: ENSMUSG00000032463, Faim, Fas apoptotic inhibitory molecule, [Score=54.7, Expect=2e-09]} {Smed: dd_Smed_v6_4798_0_1, dd_Smed_v6_4798_0_1, [RH, Score=75.1, Expect=7e-18]} {RNA1310_42034} {RNA815_19884}
16. MligTC455_41368 369 7.68 Mlig455_007683, Mlig455_020872, Mlig455_020918, Mlig455_020998

Neo: -

Age: -

 0.95 - - 0.950 - - -

Mlig455_007683 {REF} {Length: 1379} {RNA1310_25040.2} {RNA815_12562.1}

Mlig455_020872 {REF} {Length: 1217} {RNA1310_25040.2} {RNA815_12562.1}

Mlig455_020918 {REF} {Length: 1220} {RNA1310_25040.2} {RNA815_12562.1}

Mlig455_020998 {REF} {Length: 1235} {RNA1310_25040.1} {RNA815_12562.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA