TomoSeq data search

Data search

Results for MligTC455_32031

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_32031

148

3.08

Mlig455_019342, Mlig455_019557, Mlig455_059134

Neo: -

Age: -

GRIK4

Mlig455_019342 {REF} {Length: 4028} {Pfam: Ligand-gated ion channel [PF00060.28, score=76.6]; Receptor family ligand binding region [PF01094.30, score=49.5]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=47.4]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=36.3]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=147, Expect=1e-35]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=141, Expect=8e-34]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=147, Expect=8e-36]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=141, Expect=6e-34]} {Dmel: FBgn0038837, CG3822, [Score=135, Expect=2e-32]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=132, Expect=2e-31]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=265, Expect=1e-80]} {RNA1509_10728} {RNA1310_123} {RNA815_8415.1}

Mlig455_019557 {REF} {Length: 3612} {Pfam: Ligand-gated ion channel [PF00060.28, score=76.5]; Receptor family ligand binding region [PF01094.30, score=50.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=47.4]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=36.3]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=145, Expect=6e-35]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=141, Expect=8e-34]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=145, Expect=4e-35]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=141, Expect=6e-34]} {Dmel: FBgn0038837, CG3822, [Score=135, Expect=2e-32]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=131, Expect=3e-31]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=263, Expect=8e-80]} {RNA1509_10728} {RNA1310_123} {RNA815_8415.1}

Mlig455_059134 {REF} {Length: 447} {Pfam: Receptor family ligand binding region [PF01094.30, score=23.4]; Iron-containing alcohol dehydrogenase [PF13685.8, score=18.5]} {RNA1509_10728} {RNA1310_4026} {RNA815_8415.1}

Cumulative graph for MligTC455_32031

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.413	2.347	0.99979	1.00000
RegionR2	0.332	2.347	0.66943	0.99765
RegionR3	0.622	2.347	0.54656	1.00000
RegionR4	0.898	2.347	0.47817	0.80622
RegionR5	0.517	2.347	0.57862	0.93713
RegionR6	1.131	2.347	0.33540	0.92313
RegionR7	2.732	2.347	0.02188	0.27500
RegionR8	-3.819	2.347	0.99952	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-2.227	2.347	0.99986	1.00000
RegenerationR2	-0.187	2.347	0.82547	0.99615
RegenerationR3	0.358	2.347	0.72007	0.95420
RegenerationR4	0.71	2.347	0.48483	0.86114
RegenerationR5	-0.102	2.347	0.90190	1.00000
RegenerationR6	-0.261	2.347	0.77283	0.96353
RegenerationBL	1.263	2.347	0.41577	0.78476
RegenerationTP	1.897	2.347	0.35976	0.79975

Genes with expression patterns similar to MligTC455_32031

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_32031	148	3.08	Mlig455_019342, Mlig455_019557, Mlig455_059134	Neo: - Age: -	GRIK4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_019342 {REF} {Length: 4028} {Pfam: Ligand-gated ion channel [PF00060.28, score=76.6]; Receptor family ligand binding region [PF01094.30, score=49.5]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=47.4]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=36.3]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=147, Expect=1e-35]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=141, Expect=8e-34]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=147, Expect=8e-36]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=141, Expect=6e-34]} {Dmel: FBgn0038837, CG3822, [Score=135, Expect=2e-32]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=132, Expect=2e-31]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=265, Expect=1e-80]} {RNA1509_10728} {RNA1310_123} {RNA815_8415.1} Mlig455_019557 {REF} {Length: 3612} {Pfam: Ligand-gated ion channel [PF00060.28, score=76.5]; Receptor family ligand binding region [PF01094.30, score=50.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=47.4]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=36.3]} {Human: ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=145, Expect=6e-35]; ENSG00000105737, GRIK5, glutamate ionotropic receptor kainate type subunit 5, [Score=141, Expect=8e-34]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=145, Expect=4e-35]; ENSMUSG00000003378, Grik5, glutamate receptor, ionotropic, kainate 5 (gamma 2), [Score=141, Expect=6e-34]} {Dmel: FBgn0038837, CG3822, [Score=135, Expect=2e-32]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=131, Expect=3e-31]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=263, Expect=8e-80]} {RNA1509_10728} {RNA1310_123} {RNA815_8415.1} Mlig455_059134 {REF} {Length: 447} {Pfam: Receptor family ligand binding region [PF01094.30, score=23.4]; Iron-containing alcohol dehydrogenase [PF13685.8, score=18.5]} {RNA1509_10728} {RNA1310_4026} {RNA815_8415.1}
2.	Mlig999018.1						1.792	-	-	-	0.967	-	0.825
3.	MligTC455_45064	98	2.04	Mlig455_059206	Neo: - Age: - Region-enriched R2: 3.378/0.01843	MTUS2	1.749	-	0.793	-	-	-	0.956	Mlig455_059206 {REF} {Length: 4973} {Human: ENSG00000132938, MTUS2, microtubule associated scaffold protein 2, [RH, Score=70.5, Expect=1e-11]} {Mouse: ENSMUSG00000029651, Mtus2, microtubule associated tumor suppressor candidate 2, [RH, Score=72.0, Expect=3e-12]} {Dmel: FBgn0015600, toc, toucan, [RH, Score=58.5, Expect=3e-08]} {RNA1509_44985, RNA1509_58911} {RNA1310_13922.1, RNA1509_44985} {RNA1509_44985, RNA815_11784}
4.	MligTC455_48829	471	9.81	Mlig455_012651	Neo: - Age: Down-Down-Up Region-enriched R5: 1.382/0.00796	DHTKD1	1.668	-	-	-	0.716	0.952	-	Mlig455_012651 {REF} {Length: 4604} {TRANSSPLICED} {Pfam: Transketolase, pyrimidine binding domain [PF02779.26, score=199.4]; 2-oxoglutarate dehydrogenase C-terminal [PF16870.7, score=165.1]; Dehydrogenase E1 component [PF00676.22, score=133.0]} {Human: ENSG00000181192, DHTKD1, dehydrogenase E1 and transketolase domain containing 1, [RH, Score=808, Expect=0.0]} {Mouse: ENSMUSG00000025815, Dhtkd1, dehydrogenase E1 and transketolase domain containing 1, [RH, Score=793, Expect=0.0]} {Dmel: FBgn0039827, CG1544, [RH, Score=800, Expect=0.0]} {Celegans: WBGene00014098, ogdh-2, Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial, [RH, Score=825, Expect=0.0]} {Smed: dd_Smed_v6_7384_0_1, dd_Smed_v6_7384_0_1, [RH, Score=819, Expect=0.0]} {RNA1509_13272, RNA1509_22040} {RNA1310_1958.1, RNA1509_13272} {RNA1509_13272, RNA815_5147}
5.	MligTC455_43307	242	5.04	Mlig455_061239	Neo: - Age: -		0.967	-	-	-	-	-	0.967	Mlig455_061239 {REF} {Length: 792} {NoTransDecoderORF} {RNA1509_38062} {RNA1310_36873} {RNA815_8442.1}
6.	MligTC455_40765	201	4.2	Mlig455_012352	Neo: - Age: -		0.965	-	-	-	-	-	0.965	Mlig455_012352 {REF} {Length: 2181} {RNA1310_33239} {RNA815_43683}
7.	MligTC455_24483	1015	21.14	Mlig455_001241	Neo: - Age: - Region-enriched R7: 2.426/0.00000 Region-enriched R6: 2.326/0.00000 Regeneration-downregulated R6: -2.547 Regeneration-depleted R6: -2.547		0.962	-	-	-	-	-	0.962	Mlig455_001241 {REF} {Length: 2882} {Pfam: TMEM154 protein family [PF15102.8, score=19.9]; Amnionless [PF14828.8, score=18.8]} {RNA1509_28830} {RNA1310_37428.2} {RNA815_17791}
8.	MligTC455_33475	168	3.5	Mlig455_036879	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.551 Region-enriched R8: 7.210/0.00005 Region-enriched R7: 5.996/0.00183		0.962	-	-	-	-	-	0.962	Mlig455_036879 {REF} {Length: 2954} {RNA1509_20567} {RNA1310_1034.1} {RNA815_502.1}
9.	MligTC455_48870	4176	87	Mlig455_015673, Mlig455_062482	Neo: - Age: - Region-enriched R7: 2.577/0.00000 Region-enriched R6: 1.188/0.00568 Regeneration-depleted BL: -2.714 Regeneration-depleted R6: -1.943	QSOX1	0.961	-	-	-	-	-	0.961	Mlig455_015673 {REF} {Length: 2185} {TRANSSPLICED} {Pfam: Erv1 / Alr family [PF04777.15, score=52.6]; Thioredoxin [PF00085.22, score=22.5]} {Human: ENSG00000116260, QSOX1, quiescin sulfhydryl oxidase 1, [RH, Score=162, Expect=4e-43]} {Mouse: ENSMUSG00000036327, Qsox2, quiescin Q6 sulfhydryl oxidase 2, [RH, Score=161, Expect=1e-42]; ENSMUSG00000033684, Qsox1, quiescin Q6 sulfhydryl oxidase 1, [RH, Score=158, Expect=7e-42]} {Dmel: FBgn0038919, CG17843, [RH, Score=164, Expect=1e-44]} {Celegans: WBGene00018533, F47B7.2, Sulfhydryl oxidase, [RH, Score=163, Expect=2e-43]} {Smed: dd_Smed_v6_8516_0_1, dd_Smed_v6_8516_0_1, [RH, Score=177, Expect=5e-49]} {RNA1509_24141} {RNA1310_1179.1} {RNA815_296.1} Mlig455_062482 {REF} {Length: 2215} {TRANSSPLICED} {Pfam: Erv1 / Alr family [PF04777.15, score=52.6]; Thioredoxin [PF00085.22, score=22.8]} {Human: ENSG00000116260, QSOX1, quiescin sulfhydryl oxidase 1, [RH, Score=164, Expect=7e-44]} {Mouse: ENSMUSG00000036327, Qsox2, quiescin Q6 sulfhydryl oxidase 2, [RH, Score=163, Expect=3e-43]; ENSMUSG00000033684, Qsox1, quiescin Q6 sulfhydryl oxidase 1, [RH, Score=162, Expect=2e-43]} {Dmel: FBgn0038919, CG17843, [RH, Score=162, Expect=8e-44]} {Celegans: WBGene00018533, F47B7.2, Sulfhydryl oxidase, [RH, Score=161, Expect=6e-43]} {Smed: dd_Smed_v6_8516_0_1, dd_Smed_v6_8516_0_1, [RH, Score=178, Expect=1e-49]} {RNA1509_24141, RNA1509_4359} {RNA1310_1179.1, RNA1509_24141, RNA1509_4359} {RNA1509_24141, RNA1509_4359, RNA815_296.1}
10.	MligTC455_31522	488	10.16	Mlig455_006598	Neo: - Age: Down-Up-Down		0.957	-	-	-	-	-	0.957	Mlig455_006598 {REF} {Length: 8383} {RNA1509_25311} {RNA1310_2138} {RNA815_5558.1}
11.	MligTC455_18049	3659	76.23	Mlig455_022507, Mlig455_055035	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_022507 {REF} {Length: 1498} {Pfam: PLAC8 family [PF04749.19, score=73.4]} {Smed: dd_Smed_v6_743_0_1, dd_Smed_v6_743_0_1, [Score=111, Expect=4e-33]} {RNA1509_17309, RNA1509_44969, RNA1509_59075} {RNA1310_55602, RNA1509_17309, RNA1509_44969, RNA1509_59075} {RNA1509_17309, RNA1509_44969, RNA1509_59075, RNA815_30798} Mlig455_055035 {REF} {Length: 943} {Pfam: PLAC8 family [PF04749.19, score=73.5]; Uncharacterized protein conserved in archaea (DUF2180) [PF09947.11, score=18.7]} {Smed: dd_Smed_v6_743_0_1, dd_Smed_v6_743_0_1, [Score=111, Expect=4e-33]} {RNA1509_44969} {RNA1310_55602} {RNA815_30798}
12.	MligTC455_38747	478	9.95	Mlig455_067326	Neo: - Age: - Region-enriched R6: 2.933/0.00107		0.953	-	-	-	-	-	0.953	Mlig455_067326 {REF} {Length: 2531} {Pfam: Ras association (RalGDS/AF-6) domain [PF00788.25, score=25.1]} {Smed: dd_Smed_v6_11758_0_1, dd_Smed_v6_11758_0_1, [RH, Score=53.1, Expect=1e-08]} {RNA1509_16620} {RNA1310_13139.1} {RNA815_14453}
13.	MligTC455_43755	1306	27.21	Mlig455_010280	Neo: - Age: - Region-enriched R7: 1.117/0.04060 Regeneration-downregulated BL: -2.741 Regeneration-depleted BL: -2.741	SMTN	0.951	-	-	-	-	-	0.951	Mlig455_010280 {REF} {Length: 2087} {Pfam: Calponin homology (CH) domain [PF00307.33, score=83.4]; Smoothelin cytoskeleton protein [PF12510.10, score=35.2]; CAMSAP CH domain [PF11971.10, score=32.4]} {Human: ENSG00000183963, SMTN, smoothelin, [RH, Score=168, Expect=2e-45]} {Mouse: ENSMUSG00000020439, Smtn, smoothelin, [RH, Score=162, Expect=2e-43]} {Dmel: FBgn0085446, CG34417, [RH, Score=160, Expect=7e-43]} {Celegans: WBGene00020530, T15B12.1, [RH, Score=144, Expect=4e-39]} {Smed: dd_Smed_v6_2554_0_1, dd_Smed_v6_2554_0_1, [RH, Score=176, Expect=2e-54]} {RNA1509_21748} {RNA1310_16112} {RNA815_14550}
14.	MligTC455_13160	39	0.81	Mlig455_046280	Neo: - Age: -		0.95	-	-	-	-	-	0.950	Mlig455_046280 {REF} {Length: 528} {RNA1509_12256} {RNA1310_127832} {RNA815_51385}
15.	MligTC455_18502	173	3.6	Mlig455_021723	Neo: - Age: - Region-enriched R7: 2.784/0.00010		0.95	-	-	-	-	-	0.950	Mlig455_021723 {REF} {Length: 1402} {NoTransDecoderORF} {RNA1509_55649} {RNA1310_30889, RNA1509_55649} {RNA1509_55649, RNA815_11762}

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