M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32389

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32389 47 0.97 Mlig455_020337, Mlig455_020424

Neo: -

Age: -

Mlig455_020337 {REF} {Length: 1740} {RNA1509_20097} {RNA1310_11633} {RNA815_6678}

Mlig455_020424 {REF} {Length: 2080} {RNA1509_20097} {RNA1310_11633} {RNA815_6678}

Cumulative graph for MligTC455_32389

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.745 1.003 0.99996 1.00000
RegionR2 -3.015 1.003 0.99980 1.00000
RegionR3 -0.677 1.003 0.99995 1.00000
RegionR4 3.246 1.003 0.99992 1.00000
RegionR5 0.474 1.003 1.00000 1.00000
RegionR6 -0.832 1.003 0.99996 1.00000
RegionR7 -0.638 1.003 1.00000 1.00000
RegionR8 -0.303 1.003 0.99998 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.45 1.003 0.99998 1.00000
RegenerationR2 4.059 1.003 0.00360 0.09221
RegenerationR3 1.889 1.003 0.27576 0.70973
RegenerationR4 1.289 1.003 0.25534 0.70329
RegenerationR5 1.208 1.003 0.29309 0.72097
RegenerationR6 3.385 1.003 0.10671 0.40446
RegenerationBL 4.611 1.003 0.02300 0.16608
RegenerationTP 1.508 1.003 0.58619 0.95350


Genes with expression patterns similar to MligTC455_32389

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32389 47 0.97 Mlig455_020337, Mlig455_020424

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000

Mlig455_020337 {REF} {Length: 1740} {RNA1509_20097} {RNA1310_11633} {RNA815_6678}

Mlig455_020424 {REF} {Length: 2080} {RNA1509_20097} {RNA1310_11633} {RNA815_6678}
2. MligTC455_08185 626 13.04 Mlig455_054705

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.216

Regeneration-downregulated TP: -3.161

Regeneration-depleted TP: -3.161

 1.713 - - - 0.763 0.950 - Mlig455_054705 {REF} {Length: 3519} {Pfam: Immunoglobulin domain [PF13927.8, score=34.9]; Immunoglobulin I-set domain [PF07679.18, score=31.1]; Immunoglobulin domain [PF00047.27, score=19.9]} {Mouse: ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=49.7, Expect=1e-05]} {RNA1509_36313} {RNA1310_3850.1, RNA1509_36313} {RNA1509_36313, RNA815_412}
3. MligTC455_41583 264 5.5 Mlig455_029161

Neo: -

Age: Down-Down-Down

Region-enriched R4: 2.539/0.00741

Regeneration-upregulated BL: 2.950

Regeneration-enriched BL: 2.950

 0.983 - - - - 0.983 - Mlig455_029161 {REF} {Length: 3133} {TRANSSPLICED} {RNA1509_59069} {RNA1310_32555, RNA1509_59069} {RNA1509_59069, RNA815_10517}
4. MligTC455_41584 267 5.57 Mlig455_029189

Neo: -

Age: -

Region-enriched R4: 2.456/0.01143

Regeneration-upregulated BL: 2.790

Regeneration-enriched BL: 2.790

 0.98 - - - - 0.980 - Mlig455_029189 {REF} {Length: 1125} {RNA1509_59069} {RNA1310_56599.1} {RNA815_31355}
5. MligTC455_37944 18 0.37 Mlig455_050320

Neo: -

Age: -

 0.974 - - - 0.974 - - Mlig455_050320 {REF} {Length: 930} {RNA1509_35022} {RNA1310_6390.1} {RNA815_7453}
6. MligTC455_18821 223 4.64 Mlig455_042125

Neo: -

Age: -

Region-enriched R8: 8.011/0.00034

 WNT1 0.97 - - - - 0.970 - Mlig455_042125 {REF} {Length: 2758} {Pfam: wnt family [PF00110.21, score=265.1]} {Human: ENSG00000125084, WNT1, Wnt family member 1, [Score=180, Expect=1e-51]; ENSG00000105989, WNT2, Wnt family member 2, [Score=178, Expect=3e-51]; ENSG00000002745, WNT16, Wnt family member 16, [Score=172, Expect=6e-49]; ENSG00000154764, WNT7A, Wnt family member 7A, [Score=172, Expect=8e-49]} {Mouse: ENSMUSG00000022997, Wnt1, wingless-type MMTV integration site family, member 1, [Score=180, Expect=7e-52]; ENSMUSG00000029671, Wnt16, wingless-type MMTV integration site family, member 16, [Score=176, Expect=1e-50]; ENSMUSG00000010797, Wnt2, wingless-type MMTV integration site family, member 2, [Score=175, Expect=3e-50]; ENSMUSG00000030093, Wnt7a, wingless-type MMTV integration site family, member 7A, [Score=172, Expect=5e-49]} {Dmel: FBgn0004360, Wnt2, Wnt oncogene analog 2, [Score=145, Expect=2e-39]} {Celegans: WBGene00000858, cwn-2, [Score=159, Expect=2e-44]} {Smed: dd_Smed_v6_28398_0_1, dd_Smed_v6_28398_0_1, [RH, Score=227, Expect=9e-70]} {RNA1509_55690} {RNA1310_28464, RNA1509_55690} {RNA1509_55690, RNA815_12843}
7. MligTC455_12036 9 0.19 Mlig455_026886

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_026886 {REF} {Length: 1284} {NoTransDecoderORF} {RNA1310_143140}
8. MligTC455_42743 64 1.32 Mlig455_011491

Neo: -

Age: -

Regeneration-upregulated BL: 6.392

Regeneration-enriched BL: 6.392

 SDF4 0.966 - - - - 0.966 - Mlig455_011491 {REF} {Length: 1498} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=64.3]; EF hand [PF13202.8, score=60.5]; EF-hand domain [PF13405.8, score=55.8]; EF hand [PF00036.34, score=52.6]; EF-hand domain pair [PF13833.8, score=34.4]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=26.5]} {Human: ENSG00000078808, SDF4, stromal cell derived factor 4, [RH, Score=124, Expect=8e-32]} {Mouse: ENSMUSG00000029076, Sdf4, stromal cell derived factor 4, [RH, Score=134, Expect=8e-36]} {Dmel: FBgn0051475, CG31475, [RH, Score=87.8, Expect=7e-19]} {Celegans: WBGene00016965, C56C10.9, [RH, Score=92.0, Expect=6e-21]} {Smed: dd_Smed_v6_9880_0_1, dd_Smed_v6_9880_0_1, [RH, Score=150, Expect=6e-42]} {RNA1509_24066} {RNA1310_21115} {RNA815_17056}
9. MligTC455_08865 151 3.15 Mlig455_056733

Neo: -

Age: -

 ALS2 0.965 - - - - 0.965 - Mlig455_056733 {REF} {Length: 7609} {TRANSSPLICED} {Pfam: Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=85.1]; MORN repeat [PF02493.22, score=79.5]; Vacuolar sorting protein 9 (VPS9) domain [PF02204.20, score=45.4]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=38.0]} {Human: ENSG00000003393, ALS2, ALS2, alsin Rho guanine nucleotide exchange factor, [RH, Score=307, Expect=6e-84]} {Mouse: ENSMUSG00000026024, Als2, alsin Rho guanine nucleotide exchange factor, [RH, Score=315, Expect=2e-86]} {Dmel: FBgn0037116, Als2, Amyotrophic lateral sclerosis 2, [RH, Score=87.8, Expect=8e-17]} {Smed: dd_Smed_v6_12762_0_1, dd_Smed_v6_12762_0_1, [Score=73.9, Expect=6e-13]} {RNA1509_6929} {RNA1310_334.1, RNA1509_6929} {RNA1509_6929, RNA815_1754}
10. MligTC455_40913 85 1.77 Mlig455_067935

Neo: -

Age: -

Regeneration-upregulated BL: 9.167

Regeneration-enriched BL: 9.167

 ASCL5 0.964 - - - - 0.964 - Mlig455_067935 {REF} {Length: 1417} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=44.2]} {Human: ENSG00000232237, ASCL5, achaete-scute family bHLH transcription factor 5, [Score=48.1, Expect=4e-06]; ENSG00000176009, ASCL3, achaete-scute family bHLH transcription factor 3, [Score=47.0, Expect=7e-06]} {Mouse: ENSMUSG00000097918, Ascl5, achaete-scute family bHLH transcription factor 5, [Score=48.5, Expect=2e-06]} {Dmel: FBgn0004170, sc, scute, [Score=55.1, Expect=2e-08]} {Celegans: WBGene00001950, hlh-3, Helix-loop-helix protein 3, [Score=47.0, Expect=3e-06]}
11. MligTC455_05769 56 1.17 Mlig455_063285

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_063285 {REF} {Length: 1011} {Pfam: zinc-finger C2H2-type [PF16622.7, score=27.9]; Protein of unknown function (DUF562) [PF04763.14, score=21.2]} {RNA1509_33737} {RNA1310_41122}
12. MligTC455_10248 20 0.42 Mlig455_060602, Mlig455_060644

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_060602 {REF} {Length: 539} {NoTransDecoderORF} {RNA1310_71387} {RNA815_36639}

Mlig455_060644 {REF} {Length: 541} {NoTransDecoderORF} {RNA1310_71387} {RNA815_36639}
13. MligTC455_30483 50 1.04 Mlig455_036778

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_036778 {REF} {Length: 303} {NoTransDecoderORF} {RNA1310_71532} {RNA815_40310}
14. MligTC455_12741 31 0.65 Mlig455_068263

Neo: -

Age: -

 TMEM26 0.955 - - - - 0.955 - Mlig455_068263 {REF} {Length: 2059} {Pfam: Transmembrane protein 26 [PF09772.11, score=224.2]} {Human: ENSG00000196932, TMEM26, transmembrane protein 26, [Score=126, Expect=2e-32]} {Mouse: ENSMUSG00000060044, Tmem26, transmembrane protein 26, [Score=133, Expect=3e-35]} {Dmel: FBgn0039429, CG14238, [Score=179, Expect=2e-51]} {Celegans: WBGene00022469, Y119C1B.3, [Score=136, Expect=5e-36]} {Smed: dd_Smed_v6_16130_0_1, dd_Smed_v6_16130_0_1, [Score=139, Expect=2e-37]} {RNA1310_26669} {RNA815_22828}
15. MligTC455_16657 842 17.53 Mlig455_042515

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.634

Region-enriched R7: 2.586/0.00000
Region-enriched R8: 2.572/0.00150

Regeneration-upregulated BL: 2.469

Regeneration-enriched BL: 2.469

 FERD3L 0.955 - - - - 0.955 - Mlig455_042515 {REF} {Length: 1703} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=59.2]} {Human: ENSG00000146618, FERD3L, Fer3 like bHLH transcription factor, [RH, Score=111, Expect=4e-29]} {Mouse: ENSMUSG00000046518, Ferd3l, Fer3 like bHLH transcription factor, [RH, Score=111, Expect=3e-29]} {Dmel: FBgn0037937, Fer3, 48 related 3, [RH, Score=119, Expect=5e-32]} {Celegans: WBGene00001957, hlh-13, Helix-loop-helix protein 13, [Score=67.8, Expect=1e-13]} {Smed: dd_Smed_v6_8096_0_1, dd_Smed_v6_8096_0_1, [RH, Score=120, Expect=2e-32]} {RNA1509_28158} {RNA1310_23170} {RNA815_15242}
16. MligTC455_49529 1651 34.4 Mlig455_004322

Neo: -

Age: Down-Up-Up

Regeneration-upregulated BL: 2.614

Regeneration-enriched BL: 2.614

 0.954 - - - - 0.954 - Mlig455_004322 {REF} {Length: 1256} {Pfam: Glycerophosphoryl diester phosphodiesterase family [PF13653.8, score=23.0]; Glycerophosphoryl diester phosphodiesterase family [PF03009.19, score=19.8]} {RNA1509_56412} {RNA1310_24504} {RNA815_10124.1}
17. MligTC455_10259 124 2.58 Mlig455_052843

Neo: Int S/G2/M

Age: -

 0.953 - - - - 0.953 - Mlig455_052843 {REF} {Length: 1170} {RNA1310_32241.1} {RNA815_32339}
18. MligTC455_17475 56 1.16 Mlig455_065300, Mlig455_065322

Neo: -

Age: -

 MYT1L 0.953 - - - - 0.953 -

Mlig455_065300 {REF} {Length: 3149} {Pfam: Zinc finger, C2HC type [PF01530.20, score=77.6]} {Human: ENSG00000186487, MYT1L, myelin transcription factor 1 like, [RH, Score=130, Expect=2e-33]; ENSG00000196132, MYT1, myelin transcription factor 1, [RH, Score=126, Expect=1e-29]; ENSG00000276876, MYT1, myelin transcription factor 1, [RH, Score=126, Expect=1e-29]; ENSG00000147488, ST18, ST18, C2H2C-type zinc finger, [RH, Score=126, Expect=3e-30]; ENSG00000275018, AL121581.1, novel transcript, [RH, Score=125, Expect=1e-29]} {Mouse: ENSMUSG00000061911, Myt1l, myelin transcription factor 1-like, [RH, Score=129, Expect=6e-31]; ENSMUSG00000010505, Myt1, myelin transcription factor 1, [RH, Score=125, Expect=7e-30]; ENSMUSG00000033740, St18, suppression of tumorigenicity 18, [RH, Score=125, Expect=1e-29]} {Dmel: FBgn0263772, CG43689, [Score=87.4, Expect=1e-17]} {Celegans: WBGene00009939, ztf-11, Zinc finger putative Transcription Factor family, [RH, Score=123, Expect=1e-29]} {Smed: dd_Smed_v6_80183_0_1, dd_Smed_v6_80183_0_1, [RH, Score=132, Expect=7e-35]} {RNA1310_120779}

Mlig455_065322 {REF} {Length: 1854} {Pfam: Zinc finger, C2HC type [PF01530.20, score=74.9]} {Human: ENSG00000186487, MYT1L, myelin transcription factor 1 like, [RH, Score=129, Expect=1e-31]; ENSG00000147488, ST18, ST18, C2H2C-type zinc finger, [RH, Score=126, Expect=3e-30]; ENSG00000276876, MYT1, myelin transcription factor 1, [RH, Score=125, Expect=8e-30]; ENSG00000196132, MYT1, myelin transcription factor 1, [RH, Score=125, Expect=8e-30]; ENSG00000275018, AL121581.1, novel transcript, [RH, Score=125, Expect=9e-30]} {Mouse: ENSMUSG00000061911, Myt1l, myelin transcription factor 1-like, [RH, Score=128, Expect=7e-31]; ENSMUSG00000010505, Myt1, myelin transcription factor 1, [RH, Score=125, Expect=6e-30]; ENSMUSG00000033740, St18, suppression of tumorigenicity 18, [RH, Score=124, Expect=1e-29]} {Dmel: FBgn0263772, CG43689, [Score=87.0, Expect=1e-17]} {Celegans: WBGene00009939, ztf-11, Zinc finger putative Transcription Factor family, [RH, Score=124, Expect=2e-30]} {Smed: dd_Smed_v6_80183_0_1, dd_Smed_v6_80183_0_1, [RH, Score=133, Expect=3e-35]} {RNA1310_120779}
19. MligTC455_49782 116 2.41 Mlig455_055413

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.547

Regeneration-upregulated BL: 5.364

Regeneration-enriched BL: 5.364

 TAX1BP3 0.953 - - - - 0.953 - Mlig455_055413 {REF} {Length: 1637} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=31.8]; PDZ domain [PF17820.3, score=25.7]; PDZ domain [PF13180.8, score=22.4]} {Human: ENSG00000213977, TAX1BP3, Tax1 binding protein 3, [Score=56.6, Expect=1e-10]} {Mouse: ENSMUSG00000040158, Tax1bp3, Tax1 (human T cell leukemia virus type I) binding protein 3, [Score=56.6, Expect=6e-11]} {Dmel: FBgn0035148, CG3402, [Score=72.0, Expect=5e-17]} {Celegans: WBGene00016678, C45G9.7, [Score=77.8, Expect=2e-19]} {RNA1509_46994} {RNA1310_49427.1} {RNA815_26268.2}
20. MligTC455_44539 510 10.62 Mlig455_019095

Neo: Irradiation

Age: logFC(26M/2M)=0.310

Regeneration-upregulated BL: 1.934

Regeneration-enriched BL: 1.934

 AATF 0.952 - - - - 0.952 - Mlig455_019095 {REF} {Length: 2406} {TRANSSPLICED} {Pfam: Apoptosis-antagonizing transcription factor, C-terminal [PF08164.14, score=47.5]; Apoptosis antagonizing transcription factor [PF13339.8, score=33.0]} {Human: ENSG00000275700, AATF, apoptosis antagonizing transcription factor, [RH, Score=82.8, Expect=5e-17]; ENSG00000276072, AATF, apoptosis antagonizing transcription factor, [RH, Score=82.8, Expect=5e-17]} {Mouse: ENSMUSG00000018697, Aatf, apoptosis antagonizing transcription factor, [RH, Score=80.5, Expect=2e-16]} {Dmel: FBgn0031851, Aatf, Apoptosis antagonizing transcription factor, [RH, Score=84.3, Expect=7e-18]} {Celegans: WBGene00022269, Y73E7A.2, [Score=54.7, Expect=3e-08]} {RNA1509_19298, RNA1509_23937, RNA1509_7479} {RNA1310_30685.1, RNA1509_19298, RNA1509_23937, RNA1509_7479} {RNA1509_19298, RNA1509_23937, RNA1509_7479, RNA815_21622}
21. MligTC455_45818 312 6.51 Mlig455_009757, Mlig455_070114

Neo: -

Age: -

 SCML2 0.951 - - - - 0.951 -

Mlig455_009757 {REF} {Length: 2536} {Pfam: mbt repeat [PF02820.20, score=136.4]; SAM domain (Sterile alpha motif) [PF00536.32, score=25.7]} {Human: ENSG00000102098, SCML2, Scm polycomb group protein like 2, [RH, Score=264, Expect=2e-80]} {Mouse: ENSMUSG00000000037, Scml2, Scm polycomb group protein like 2, [RH, Score=258, Expect=3e-77]} {Dmel: FBgn0003334, Scm, Sex comb on midleg, [RH, Score=242, Expect=2e-71]} {Celegans: WBGene00003041, lin-61, [RH, Score=90.1, Expect=4e-19]} {Smed: dd_Smed_v6_10208_0_2, dd_Smed_v6_10208_0_2, [RH, Score=176, Expect=4e-49]} {RNA1509_29967} {RNA1310_17057.1, RNA1509_29967} {RNA1509_29967, RNA815_24997}

Mlig455_070114 {REF} {Length: 4024} {Pfam: mbt repeat [PF02820.20, score=138.3]; SAM domain (Sterile alpha motif) [PF00536.32, score=25.7]} {Human: ENSG00000102098, SCML2, Scm polycomb group protein like 2, [RH, Score=266, Expect=3e-81]} {Mouse: ENSMUSG00000000037, Scml2, Scm polycomb group protein like 2, [RH, Score=257, Expect=4e-77]} {Dmel: FBgn0003334, Scm, Sex comb on midleg, [RH, Score=244, Expect=5e-72]} {Celegans: WBGene00003041, lin-61, [RH, Score=92.0, Expect=9e-20]} {Smed: dd_Smed_v6_10208_0_2, dd_Smed_v6_10208_0_2, [RH, Score=177, Expect=9e-50]} {RNA1509_29967} {RNA1310_17057.1} {RNA815_24997}
22. MligTC455_15608 37 0.77 Mlig455_065097

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_065097 {REF} {Length: 714} {NoTransDecoderORF} {RNA1509_54815} {RNA1310_122782} {RNA815_2261.1}
23. MligTC455_21758 11 0.22 Mlig455_057866

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_057866 {REF} {Length: 1404} {RNA1509_2515} {RNA1310_23566} {RNA815_9263}
24. MligTC455_28887 210 4.38 Mlig455_012627, Mlig455_062854

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_012627 {REF} {Length: 2369} {RNA1509_49147} {RNA1310_4067} {RNA815_2940.1}

Mlig455_062854 {REF} {Length: 8921} {RNA1509_57671} {RNA1310_4067, RNA1509_57671} {RNA1509_57671, RNA815_2940.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA