M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32620

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32620 350 7.30 Mlig455_012643, Mlig455_012662

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.508

Mlig455_012643 {REF} {Length: 2644} {RNA1509_45114} {RNA1310_9880.2} {RNA815_4254}

Mlig455_012662 {REF} {Length: 2808} {RNA1509_24105, RNA1509_45114} {RNA1310_9880.2, RNA1509_24105, RNA1509_45114} {RNA1509_24105, RNA1509_45114, RNA815_4254}

Cumulative graph for MligTC455_32620

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.137 3.267 0.94177 1.00000
RegionR2 -0.16 3.267 0.82257 1.00000
RegionR3 -0.125 3.267 0.83018 1.00000
RegionR4 0.295 3.267 0.68383 0.97665
RegionR5 -0.537 3.267 0.33633 0.68255
RegionR6 -0.1 3.267 0.86481 1.00000
RegionR7 -1.026 3.267 0.17033 0.75950
RegionR8 1.79 3.267 0.00728 0.15753

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.543 3.267 0.44277 1.00000
RegenerationR2 -0.84 3.267 0.20699 0.65433
RegenerationR3 -0.425 3.267 0.54821 0.88273
RegenerationR4 -0.967 3.267 0.21249 0.65987
RegenerationR5 -0.806 3.267 0.23545 0.66929
RegenerationR6 -1.144 3.267 0.13875 0.45673
RegenerationBL -5.942 3.267 0.00328 0.04974
RegenerationTP -0.184 3.267 0.83174 1.00000


Genes with expression patterns similar to MligTC455_32620

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32620 350 7.3 Mlig455_012643, Mlig455_012662

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.508

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_012643 {REF} {Length: 2644} {RNA1509_45114} {RNA1310_9880.2} {RNA815_4254}

Mlig455_012662 {REF} {Length: 2808} {RNA1509_24105, RNA1509_45114} {RNA1310_9880.2, RNA1509_24105, RNA1509_45114} {RNA1509_24105, RNA1509_45114, RNA815_4254}
2. MligTC455_44672 22 0.46 Mlig455_011312

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=2.222

 CIAO1 0.965 - - - 0.965 - - Mlig455_011312 {REF} {Length: 1205} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=165.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=73.7]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=40.9]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=26.9]; Transcription factor IIIC subunit delta N-term [PF12657.9, score=23.3]; WD40-like Beta Propeller Repeat [PF07676.14, score=22.9]; Proteasome subunit A N-terminal signature [PF10584.11, score=20.0]; IKI3 family [PF04762.14, score=19.3]} {Human: ENSG00000144021, CIAO1, cytosolic iron-sulfur assembly component 1, [RH, Score=269, Expect=3e-88]} {Mouse: ENSMUSG00000003662, Ciao1, cytosolic iron-sulfur protein assembly 1, [RH, Score=270, Expect=1e-88]} {Dmel: FBgn0033972, Ciao1, [RH, Score=266, Expect=2e-87]} {Celegans: WBGene00012479, Y18D10A.9, Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog, [RH, Score=211, Expect=4e-66]} {Smed: dd_Smed_v6_6661_0_1, dd_Smed_v6_6661_0_1, [RH, Score=243, Expect=3e-78]} {RNA1509_6667} {RNA1310_26308} {RNA815_12985}
3. MligTC455_19425 48 1 Mlig455_036286

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_036286 {REF} {Length: 2321} {NoTransDecoderORF} {RNA1509_60145} {RNA1310_87383} {RNA815_53511}
4. MligTC455_27817 125 2.61 Mlig455_024260

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_024260 {REF} {Length: 3633} {Pfam: Zinc knuckle [PF00098.25, score=21.3]} {RNA1509_6137} {RNA1310_131.1} {RNA815_52.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA