M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32651

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32651 487 10.15 Mlig455_041254

Neo: -

Age: -

 Mlig455_041254 {REF} {Length: 302} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_31475} {RNA1310_25959} {RNA815_48405}

Cumulative graph for MligTC455_32651

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.046 3.711 0.44768 1.00000
RegionR2 0.21 3.711 0.66111 0.99281
RegionR3 0.097 3.711 0.80166 1.00000
RegionR4 0.009 3.711 0.98363 1.00000
RegionR5 0.377 3.711 0.27900 0.60652
RegionR6 -0.319 3.711 0.46648 1.00000
RegionR7 -0.345 3.711 0.55465 1.00000
RegionR8 1.018 3.711 0.06878 0.50380

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.72 3.711 0.27389 0.97586
RegenerationR2 -0.057 3.711 0.87229 1.00000
RegenerationR3 0.313 3.711 0.44547 0.83002
RegenerationR4 0.053 3.711 0.90422 1.00000
RegenerationR5 0.02 3.711 0.95560 1.00000
RegenerationR6 0.42 3.711 0.34812 0.69327
RegenerationBL 0.619 3.711 0.20039 0.53892
RegenerationTP -0.328 3.711 0.56665 0.94261


Genes with expression patterns similar to MligTC455_32651

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32651 487 10.15 Mlig455_041254

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_041254 {REF} {Length: 302} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_31475} {RNA1310_25959} {RNA815_48405}
2. MligTC455_48014 1089 22.69 Mlig455_020705

Neo: -

Age: -

Regeneration-upregulated BL: 1.643

Regeneration-enriched BL: 1.643

 TMED5 1.789 - - 0.834 - - 0.955 Mlig455_020705 {REF} {Length: 2298} {TRANSSPLICED} {Pfam: emp24/gp25L/p24 family/GOLD [PF01105.26, score=90.2]} {Human: ENSG00000117500, TMED5, transmembrane p24 trafficking protein 5, [RH, Score=89.7, Expect=6e-20]} {Mouse: ENSMUSG00000063406, Tmed5, transmembrane p24 trafficking protein 5, [RH, Score=89.4, Expect=7e-20]} {Dmel: FBgn0264389, opm, opossum, [RH, Score=75.5, Expect=3e-15]} {Celegans: WBGene00010670, K08E4.6, [RH, Score=91.7, Expect=6e-21]} {Smed: dd_Smed_v6_3127_0_1, dd_Smed_v6_3127_0_1, [RH, Score=99.4, Expect=3e-23]} {RNA1509_5946} {RNA1310_10367} {RNA815_5040.1}
3. MligTC455_48152 214 4.45 Mlig455_044148, Mlig455_044160

Neo: -

Age: -

 RPIA 1.654 0.704 - - 0.950 - -

Mlig455_044148 {REF} {Length: 1713} {TRANSSPLICED} {Pfam: Ribose 5-phosphate isomerase A (phosphoriboisomerase A) [PF06026.16, score=197.8]} {Human: ENSG00000153574, RPIA, ribose 5-phosphate isomerase A, [RH, Score=253, Expect=1e-83]} {Mouse: ENSMUSG00000053604, Rpia, ribose 5-phosphate isomerase A, [RH, Score=254, Expect=3e-84]} {Dmel: FBgn0050410, Rpi, Ribose-5-phosphate isomerase, [RH, Score=203, Expect=3e-65]} {Celegans: WBGene00015101, rpia-1, Probable-ribose 5-phosphate isomerase, [RH, Score=175, Expect=3e-54]} {Smed: dd_Smed_v6_12956_0_2, dd_Smed_v6_12956_0_2, [Score=247, Expect=1e-82]} {RNA1509_26023} {RNA1310_18063.1, RNA1509_26023} {RNA1509_26023, RNA815_6995.1}

Mlig455_044160 {REF} {Length: 1605} {TRANSSPLICED} {Pfam: Ribose 5-phosphate isomerase A (phosphoriboisomerase A) [PF06026.16, score=159.5]} {Human: ENSG00000153574, RPIA, ribose 5-phosphate isomerase A, [Score=226, Expect=4e-73]} {Mouse: ENSMUSG00000053604, Rpia, ribose 5-phosphate isomerase A, [Score=228, Expect=3e-74]} {Dmel: FBgn0050410, Rpi, Ribose-5-phosphate isomerase, [Score=175, Expect=1e-54]} {Celegans: WBGene00015101, rpia-1, Probable-ribose 5-phosphate isomerase, [Score=148, Expect=7e-44]} {Smed: dd_Smed_v6_12956_0_2, dd_Smed_v6_12956_0_2, [Score=215, Expect=3e-70]} {RNA1509_26023} {RNA1310_18506.1} {RNA815_6995.1}
4. MligTC455_41509 625 13.02 Mlig455_051523, Mlig455_051559

Neo: -

Age: -

 CDK14 0.957 - - - 0.957 - -

Mlig455_051523 {REF} {Length: 5006} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=227.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=112.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [RH, Score=423, Expect=5e-141]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [RH, Score=412, Expect=2e-137]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [RH, Score=424, Expect=5e-141]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [RH, Score=405, Expect=3e-134]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [RH, Score=441, Expect=5e-147]} {Celegans: WBGene00022519, ZC123.4, [RH, Score=348, Expect=6e-111]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [RH, Score=460, Expect=5e-152]} {RNA1509_30378} {RNA1310_6181} {RNA815_15743}

Mlig455_051559 {REF} {Length: 4223} {Pfam: Protein kinase domain [PF00069.27, score=227.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=112.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [RH, Score=423, Expect=5e-141]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [RH, Score=412, Expect=2e-137]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [RH, Score=424, Expect=5e-141]; ENSMUSG00000026023, Cdk15, cyclin-dependent kinase 15, [RH, Score=405, Expect=3e-134]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [RH, Score=441, Expect=5e-147]} {Celegans: WBGene00022519, ZC123.4, [RH, Score=348, Expect=6e-111]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [RH, Score=460, Expect=5e-152]} {RNA1509_30378} {RNA1310_6181} {RNA815_15743}
5. MligTC455_49019 224 4.66 Mlig455_056901

Neo: -

Age: Up-Down-Down

 0.953 - - - 0.953 - - Mlig455_056901 {REF} {Length: 1656} {RNA1509_49330, RNA1509_50020} {RNA1310_42965, RNA1509_49330} {RNA1509_49330, RNA815_21375.1}
6. MligTC455_51245 143 2.98 Mlig455_069540

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_069540 {REF} {Length: 3798} {Pfam: Protein of unknown function (DUF229) [PF02995.19, score=376.9]} {Dmel: FBgn0038318, CG6236, [RH, Score=360, Expect=6e-115]} {Celegans: WBGene00012762, Y41E3.1, [RH, Score=343, Expect=2e-108]} {Smed: dd_Smed_v6_4842_0_1, dd_Smed_v6_4842_0_1, [RH, Score=309, Expect=3e-96]} {RNA1509_5713, RNA1509_58189} {RNA1310_3676.1, RNA1509_58189} {RNA1509_58189, RNA815_1071.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA