M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32708

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32708 7889 164.35 Mlig455_057122

Neo: Neoblast

Age: logFC(26M/2M)=0.181

 EIF3D Mlig455_057122 {REF} {Length: 1817} {Pfam: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [PF05091.14, score=693.0]; NMDA receptor-regulated gene protein 2 C-terminus [PF10505.11, score=22.6]} {Human: ENSG00000100353, EIF3D, eukaryotic translation initiation factor 3 subunit D, [RH, Score=622, Expect=0.0]} {Mouse: ENSMUSG00000016554, Eif3d, eukaryotic translation initiation factor 3, subunit D, [RH, Score=622, Expect=0.0]} {Dmel: FBgn0040227, eIF3d1, eukaryotic translation initiation factor 3 subunit d1, [RH, Score=595, Expect=0.0]} {Celegans: WBGene00001227, eif-3.D, Eukaryotic translation initiation factor 3 subunit D, [RH, Score=430, Expect=5e-145]} {Smed: dd_Smed_v6_2254_0_1, dd_Smed_v6_2254_0_1, [RH, Score=567, Expect=0.0]} {RNA1509_509} {RNA1310_13488} {RNA815_4680}

Cumulative graph for MligTC455_32708

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.156 7.445 0.71822 1.00000
RegionR2 -0.258 7.445 0.37071 0.76527
RegionR3 0.043 7.445 0.85967 1.00000
RegionR4 0.064 7.445 0.81689 1.00000
RegionR5 0.589 7.445 0.00896 0.05333
RegionR6 0.185 7.445 0.44096 1.00000
RegionR7 0.179 7.445 0.48434 1.00000
RegionR8 -0.647 7.445 0.04941 0.43630

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.092 7.445 0.86939 1.00000
RegenerationR2 0.057 7.445 0.85077 1.00000
RegenerationR3 0.431 7.445 0.15828 0.59019
RegenerationR4 0.521 7.445 0.10040 0.49125
RegenerationR5 0.128 7.445 0.67165 0.94140
RegenerationR6 0.451 7.445 0.13957 0.45793
RegenerationBL 0.562 7.445 0.04436 0.24081
RegenerationTP 0.298 7.445 0.34581 0.78784


Genes with expression patterns similar to MligTC455_32708

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32708 7889 164.35 Mlig455_057122

Neo: Neoblast

Age: logFC(26M/2M)=0.181

 EIF3D 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_057122 {REF} {Length: 1817} {Pfam: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [PF05091.14, score=693.0]; NMDA receptor-regulated gene protein 2 C-terminus [PF10505.11, score=22.6]} {Human: ENSG00000100353, EIF3D, eukaryotic translation initiation factor 3 subunit D, [RH, Score=622, Expect=0.0]} {Mouse: ENSMUSG00000016554, Eif3d, eukaryotic translation initiation factor 3, subunit D, [RH, Score=622, Expect=0.0]} {Dmel: FBgn0040227, eIF3d1, eukaryotic translation initiation factor 3 subunit d1, [RH, Score=595, Expect=0.0]} {Celegans: WBGene00001227, eif-3.D, Eukaryotic translation initiation factor 3 subunit D, [RH, Score=430, Expect=5e-145]} {Smed: dd_Smed_v6_2254_0_1, dd_Smed_v6_2254_0_1, [RH, Score=567, Expect=0.0]} {RNA1509_509} {RNA1310_13488} {RNA815_4680}
2. MligTC455_32709 5013 104.44 Mlig455_069296

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.278

 EIF3D 5.531 0.900 0.892 0.940 0.920 0.915 0.964 Mlig455_069296 {REF} {Length: 2163} {Pfam: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [PF05091.14, score=693.0]; NMDA receptor-regulated gene protein 2 C-terminus [PF10505.11, score=22.6]} {Human: ENSG00000100353, EIF3D, eukaryotic translation initiation factor 3 subunit D, [RH, Score=622, Expect=0.0]} {Mouse: ENSMUSG00000016554, Eif3d, eukaryotic translation initiation factor 3, subunit D, [RH, Score=622, Expect=0.0]} {Dmel: FBgn0040227, eIF3d1, eukaryotic translation initiation factor 3 subunit d1, [RH, Score=595, Expect=0.0]} {Celegans: WBGene00001227, eif-3.D, Eukaryotic translation initiation factor 3 subunit D, [RH, Score=430, Expect=5e-145]} {Smed: dd_Smed_v6_2254_0_1, dd_Smed_v6_2254_0_1, [RH, Score=567, Expect=0.0]} {RNA1509_509, RNA1509_5156} {RNA1310_13488, RNA1509_509, RNA1509_5156} {RNA1509_509, RNA1509_5156, RNA815_4680}
3. MligTC455_27994 6780 141.24 Mlig455_046529, Mlig455_046656

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.627

Region-enriched R5: 1.394/0.00007
Region-enriched R4: 1.074/0.02553

 PPIA 1.66 0.709 - - - - 0.951

Mlig455_046529 {REF} {Length: 1080} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.23, score=294.7]} {Human: ENSG00000196262, PPIA, peptidylprolyl isomerase A, [RH, Score=232, Expect=2e-76]} {Mouse: ENSMUSG00000071866, Ppia, peptidylprolyl isomerase A, [RH, Score=229, Expect=2e-75]} {Dmel: FBgn0004432, Cyp1, Cyclophilin 1, [Score=226, Expect=2e-73]} {Celegans: WBGene00000883, cyn-7, Peptidyl-prolyl cis-trans isomerase 7, [RH, Score=251, Expect=3e-84]} {Smed: dd_Smed_v6_457_0_1, dd_Smed_v6_457_0_1, [RH, Score=237, Expect=4e-79]} {RNA1509_4222} {RNA1310_55233} {RNA815_27193}

Mlig455_046656 {REF} {Length: 1071} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.23, score=268.9]} {Human: ENSG00000196262, PPIA, peptidylprolyl isomerase A, [RH, Score=235, Expect=9e-78]} {Mouse: ENSMUSG00000071866, Ppia, peptidylprolyl isomerase A, [RH, Score=234, Expect=1e-77]} {Dmel: FBgn0004432, Cyp1, Cyclophilin 1, [Score=229, Expect=8e-75]} {Celegans: WBGene00000879, cyn-3, Peptidyl-prolyl cis-trans isomerase 3, [RH, Score=251, Expect=3e-84]} {Smed: dd_Smed_v6_457_0_1, dd_Smed_v6_457_0_1, [RH, Score=241, Expect=1e-80]} {RNA1509_4222} {RNA1310_55233} {RNA815_27193}
4. MligTC455_34480 1812 37.75 Mlig455_048078

Neo: -

Age: logFC(26M/2M)=0.385

Region-enriched R4: 1.442/0.00007

 SCP2 0.97 - - - - 0.970 - Mlig455_048078 {REF} {Length: 2333} {Pfam: SCP-2 sterol transfer family [PF02036.19, score=90.8]; Thiolase, N-terminal domain [PF00108.25, score=81.6]; Thiolase, C-terminal domain [PF02803.20, score=38.2]; Alkyl sulfatase C-terminal [PF14864.8, score=22.3]; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III [PF08545.12, score=22.0]; Beta-ketoacyl synthase, N-terminal domain [PF00109.28, score=18.4]; Stage V sporulation protein AD (SpoVAD) [PF07451.13, score=17.4]} {Human: ENSG00000116171, SCP2, sterol carrier protein 2, [RH, Score=680, Expect=0.0]} {Mouse: ENSMUSG00000028603, Scp2, sterol carrier protein 2, liver, [RH, Score=706, Expect=0.0]} {Dmel: FBgn0015808, ScpX, Sterol carrier protein X-related thiolase, [RH, Score=703, Expect=0.0]} {Celegans: WBGene00013284, daf-22, Non-specific lipid-transfer protein-like 2, [RH, Score=469, Expect=7e-163]} {Smed: dd_Smed_v6_2892_0_1, dd_Smed_v6_2892_0_1, [RH, Score=531, Expect=0.0]} {RNA1509_1168} {RNA1310_9798} {RNA815_4004}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA