TomoSeq data search

Data search

Results for MligTC455_33037

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_33037	227	4.74	Mlig455_008511	Neo: - Age: logFC(26M/2M)=0.316 Regeneration-downregulated R2: -4.064 Regeneration-depleted R2: -4.064	RNF10	Mlig455_008511 {REF} {Length: 3071} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.5]; Ring finger domain [PF13639.8, score=19.7]; zinc-RING finger domain [PF14634.8, score=19.1]; RING-type zinc-finger [PF13445.8, score=19.0]} {Human: ENSG00000022840, RNF10, ring finger protein 10, [RH, Score=127, Expect=1e-29]} {Mouse: ENSMUSG00000041740, Rnf10, ring finger protein 10, [RH, Score=213, Expect=2e-58]} {Dmel: FBgn0035232, CG12099, [RH, Score=105, Expect=3e-23]} {Smed: dd_Smed_v6_3878_0_1, dd_Smed_v6_3878_0_1, [RH, Score=79.0, Expect=4e-15]} {RNA1509_3094} {RNA1310_11767.1} {RNA815_8814.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_33037

227

4.74

Mlig455_008511

Neo: -

Age: logFC(26M/2M)=0.316

Regeneration-downregulated R2: -4.064

Regeneration-depleted R2: -4.064

RNF10

Mlig455_008511 {REF} {Length: 3071} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.5]; Ring finger domain [PF13639.8, score=19.7]; zinc-RING finger domain [PF14634.8, score=19.1]; RING-type zinc-finger [PF13445.8, score=19.0]} {Human: ENSG00000022840, RNF10, ring finger protein 10, [RH, Score=127, Expect=1e-29]} {Mouse: ENSMUSG00000041740, Rnf10, ring finger protein 10, [RH, Score=213, Expect=2e-58]} {Dmel: FBgn0035232, CG12099, [RH, Score=105, Expect=3e-23]} {Smed: dd_Smed_v6_3878_0_1, dd_Smed_v6_3878_0_1, [RH, Score=79.0, Expect=4e-15]} {RNA1509_3094} {RNA1310_11767.1} {RNA815_8814.1}

Cumulative graph for MligTC455_33037

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-3.607	2.852	0.53093	1.00000
RegionR2	2.446	2.852	0.18139	0.53229
RegionR3	0.86	2.852	0.54264	1.00000
RegionR4	0.556	2.852	0.63954	0.94538
RegionR5	0.379	2.852	0.72301	1.00000
RegionR6	-0.345	2.852	0.92947	1.00000
RegionR7	-1.143	2.852	0.99190	1.00000
RegionR8	0.854	2.852	0.87060	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.571	2.852	0.99968	1.00000
RegenerationR2	-4.064	2.852	0.00000	0.00051	Specific for R2: -4.064
RegenerationR3	-2.79	2.852	0.03295	0.32418
RegenerationR4	-2.753	2.852	0.01924	0.21774
RegenerationR5	-1.746	2.852	0.11967	0.51851
RegenerationR6	-0.502	2.852	0.68984	0.91898
RegenerationBL	-1.77	2.852	0.55470	0.91078
RegenerationTP	-1.439	2.852	0.53188	0.92196

Genes with expression patterns similar to MligTC455_33037

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_33037	227	4.74	Mlig455_008511	Neo: - Age: logFC(26M/2M)=0.316 Regeneration-downregulated R2: -4.064 Regeneration-depleted R2: -4.064	RNF10	3	1.000	-	1.000	-	1.000	-	Mlig455_008511 {REF} {Length: 3071} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.8]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.5]; Ring finger domain [PF13639.8, score=19.7]; zinc-RING finger domain [PF14634.8, score=19.1]; RING-type zinc-finger [PF13445.8, score=19.0]} {Human: ENSG00000022840, RNF10, ring finger protein 10, [RH, Score=127, Expect=1e-29]} {Mouse: ENSMUSG00000041740, Rnf10, ring finger protein 10, [RH, Score=213, Expect=2e-58]} {Dmel: FBgn0035232, CG12099, [RH, Score=105, Expect=3e-23]} {Smed: dd_Smed_v6_3878_0_1, dd_Smed_v6_3878_0_1, [RH, Score=79.0, Expect=4e-15]} {RNA1509_3094} {RNA1310_11767.1} {RNA815_8814.1}
2.	MligTC455_24617	313	6.53	Mlig455_062474	Neo: - Age: logFC(26M/2M)=0.294 Region-enriched R5: 1.075/0.04507	AGO2	0.972	-	-	-	-	0.972	-	Mlig455_062474 {REF} {Length: 4513} {Pfam: Piwi domain [PF02171.19, score=367.1]; Mid domain of argonaute [PF16487.7, score=112.4]; N-terminal domain of argonaute [PF16486.7, score=105.2]; PAZ domain [PF02170.24, score=82.3]; Argonaute linker 1 domain [PF08699.12, score=79.6]; Argonaute linker 2 domain [PF16488.7, score=49.9]} {Human: ENSG00000123908, AGO2, argonaute 2, RISC catalytic component, [RH, Score=1260, Expect=0.0]; ENSG00000092847, AGO1, argonaute 1, RISC catalytic component, [RH, Score=1251, Expect=0.0]; ENSG00000126070, AGO3, argonaute 3, RISC catalytic component, [RH, Score=1232, Expect=0.0]; ENSG00000134698, AGO4, argonaute 4, RISC catalytic component, [RH, Score=1207, Expect=0.0]} {Mouse: ENSMUSG00000036698, Ago2, argonaute RISC catalytic subunit 2, [RH, Score=1260, Expect=0.0]; ENSMUSG00000041530, Ago1, argonaute RISC catalytic subunit 1, [RH, Score=1251, Expect=0.0]; ENSMUSG00000028842, Ago3, argonaute RISC catalytic subunit 3, [RH, Score=1230, Expect=0.0]; ENSMUSG00000042500, Ago4, argonaute RISC catalytic subunit 4, [RH, Score=1201, Expect=0.0]} {Dmel: FBgn0262739, AGO1, Argonaute-1, [RH, Score=1334, Expect=0.0]} {Celegans: WBGene00000105, alg-1, Argonaute-like, [RH, Score=1243, Expect=0.0]} {Smed: dd_Smed_v6_3861_0_1, dd_Smed_v6_3861_0_1, [RH, Score=1431, Expect=0.0]} {RNA1509_27677, RNA1509_9876} {RNA1310_5593, RNA1509_27677} {RNA1509_27677, RNA815_1509.1}
3.	MligTC455_09027	7	0.14	Mlig455_045828, Mlig455_045844, Mlig455_045861	Neo: - Age: -		0.971	0.971	-	-	-	-	-	Mlig455_045828 {REF} {Length: 597} {RNA1310_75832} {RNA815_49210.1} Mlig455_045844 {REF} {Length: 636} {RNA1310_75832} {RNA815_49210.1} Mlig455_045861 {REF} {Length: 462} {RNA1310_75832} {RNA815_49210.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_33037

227

4.74

Mlig455_008511

Neo: -

Age: logFC(26M/2M)=0.316

Regeneration-downregulated R2: -4.064

Regeneration-depleted R2: -4.064

RNF10

1.000

MligTC455_24617

313

6.53

Mlig455_062474

Neo: -

Age: logFC(26M/2M)=0.294

Region-enriched R5: 1.075/0.04507

AGO2

0.972

Mlig455_062474 {REF} {Length: 4513} {Pfam: Piwi domain [PF02171.19, score=367.1]; Mid domain of argonaute [PF16487.7, score=112.4]; N-terminal domain of argonaute [PF16486.7, score=105.2]; PAZ domain [PF02170.24, score=82.3]; Argonaute linker 1 domain [PF08699.12, score=79.6]; Argonaute linker 2 domain [PF16488.7, score=49.9]} {Human: ENSG00000123908, AGO2, argonaute 2, RISC catalytic component, [RH, Score=1260, Expect=0.0]; ENSG00000092847, AGO1, argonaute 1, RISC catalytic component, [RH, Score=1251, Expect=0.0]; ENSG00000126070, AGO3, argonaute 3, RISC catalytic component, [RH, Score=1232, Expect=0.0]; ENSG00000134698, AGO4, argonaute 4, RISC catalytic component, [RH, Score=1207, Expect=0.0]} {Mouse: ENSMUSG00000036698, Ago2, argonaute RISC catalytic subunit 2, [RH, Score=1260, Expect=0.0]; ENSMUSG00000041530, Ago1, argonaute RISC catalytic subunit 1, [RH, Score=1251, Expect=0.0]; ENSMUSG00000028842, Ago3, argonaute RISC catalytic subunit 3, [RH, Score=1230, Expect=0.0]; ENSMUSG00000042500, Ago4, argonaute RISC catalytic subunit 4, [RH, Score=1201, Expect=0.0]} {Dmel: FBgn0262739, AGO1, Argonaute-1, [RH, Score=1334, Expect=0.0]} {Celegans: WBGene00000105, alg-1, Argonaute-like, [RH, Score=1243, Expect=0.0]} {Smed: dd_Smed_v6_3861_0_1, dd_Smed_v6_3861_0_1, [RH, Score=1431, Expect=0.0]} {RNA1509_27677, RNA1509_9876} {RNA1310_5593, RNA1509_27677} {RNA1509_27677, RNA815_1509.1}

MligTC455_09027

0.14

Mlig455_045828, Mlig455_045844, Mlig455_045861

Neo: -

Age: -

0.971

Mlig455_045828 {REF} {Length: 597} {RNA1310_75832} {RNA815_49210.1}

Mlig455_045844 {REF} {Length: 636} {RNA1310_75832} {RNA815_49210.1}

Mlig455_045861 {REF} {Length: 462} {RNA1310_75832} {RNA815_49210.1}