TomoSeq data search

Data search

Results for MligTC455_33419

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_33419

287

5.97

Mlig455_048400

Neo: -

Age: logFC(26M/2M)=-0.308

ABCC2

Mlig455_048400 {REF} {Length: 6282} {Pfam: ABC transporter transmembrane region [PF00664.25, score=124.4]; ABC transporter [PF00005.29, score=95.2]; RecF/RecN/SMC N terminal domain [PF02463.21, score=30.3]} {Human: ENSG00000023839, ABCC2, ATP binding cassette subfamily C member 2, [Score=608, Expect=0.0]; ENSG00000278183, ABCC1, ATP binding cassette subfamily C member 1, [Score=599, Expect=0.0]; ENSG00000103222, ABCC1, ATP binding cassette subfamily C member 1, [Score=599, Expect=0.0]; ENSG00000108846, ABCC3, ATP binding cassette subfamily C member 3, [Score=584, Expect=0.0]} {Mouse: ENSMUSG00000020865, Abcc3, ATP-binding cassette, sub-family C (CFTR/MRP), member 3, [Score=600, Expect=0.0]; ENSMUSG00000023088, Abcc1, ATP-binding cassette, sub-family C (CFTR/MRP), member 1, [Score=594, Expect=0.0]; ENSMUSG00000025194, Abcc2, ATP-binding cassette, sub-family C (CFTR/MRP), member 2, [Score=570, Expect=0.0]} {Dmel: FBgn0032456, MRP, Multidrug-Resistance like Protein 1, [Score=593, Expect=0.0]} {Celegans: WBGene00003407, mrp-1, Multidrug resistance-associated protein, [Score=545, Expect=2e-178]} {Smed: dd_Smed_v6_9208_0_2, dd_Smed_v6_9208_0_2, [Score=583, Expect=0.0]} {RNA1509_18907} {RNA1310_359.1} {RNA815_6169}

Cumulative graph for MligTC455_33419

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.206	2.864	0.87667	1.00000
RegionR2	0.249	2.864	0.68640	1.00000
RegionR3	0.232	2.864	0.61527	1.00000
RegionR4	-0.581	2.864	0.30582	0.61895
RegionR5	-1.139	2.864	0.01809	0.08993
RegionR6	0.122	2.864	0.80724	1.00000
RegionR7	0.412	2.864	0.52201	1.00000
RegionR8	0.499	2.864	0.51546	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.28	2.864	0.87894	1.00000
RegenerationR2	0.807	2.864	0.11098	0.52078
RegenerationR3	0.291	2.864	0.60841	0.91189
RegenerationR4	1.065	2.864	0.06280	0.40089
RegenerationR5	1.212	2.864	0.03295	0.30283
RegenerationR6	-0.197	2.864	0.76096	0.95719
RegenerationBL	-1.794	2.864	0.08876	0.34912
RegenerationTP	0.465	2.864	0.51247	0.90951

Genes with expression patterns similar to MligTC455_33419

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_33419	287	5.97	Mlig455_048400	Neo: - Age: logFC(26M/2M)=-0.308	ABCC2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_048400 {REF} {Length: 6282} {Pfam: ABC transporter transmembrane region [PF00664.25, score=124.4]; ABC transporter [PF00005.29, score=95.2]; RecF/RecN/SMC N terminal domain [PF02463.21, score=30.3]} {Human: ENSG00000023839, ABCC2, ATP binding cassette subfamily C member 2, [Score=608, Expect=0.0]; ENSG00000278183, ABCC1, ATP binding cassette subfamily C member 1, [Score=599, Expect=0.0]; ENSG00000103222, ABCC1, ATP binding cassette subfamily C member 1, [Score=599, Expect=0.0]; ENSG00000108846, ABCC3, ATP binding cassette subfamily C member 3, [Score=584, Expect=0.0]} {Mouse: ENSMUSG00000020865, Abcc3, ATP-binding cassette, sub-family C (CFTR/MRP), member 3, [Score=600, Expect=0.0]; ENSMUSG00000023088, Abcc1, ATP-binding cassette, sub-family C (CFTR/MRP), member 1, [Score=594, Expect=0.0]; ENSMUSG00000025194, Abcc2, ATP-binding cassette, sub-family C (CFTR/MRP), member 2, [Score=570, Expect=0.0]} {Dmel: FBgn0032456, MRP, Multidrug-Resistance like Protein 1, [Score=593, Expect=0.0]} {Celegans: WBGene00003407, mrp-1, Multidrug resistance-associated protein, [Score=545, Expect=2e-178]} {Smed: dd_Smed_v6_9208_0_2, dd_Smed_v6_9208_0_2, [Score=583, Expect=0.0]} {RNA1509_18907} {RNA1310_359.1} {RNA815_6169}
2.	MligTC455_40954	333	6.93	Mlig455_042529	Neo: - Age: -		0.965	-	-	-	-	-	0.965	Mlig455_042529 {REF} {Length: 3005} {TRANSSPLICED} {RNA1509_39633} {RNA1310_7757.1} {RNA815_15362}
3.	MligTC455_33478	208	4.33	Mlig455_022409	Neo: - Age: -	NWD2	0.961	-	0.961	-	-	-	-	Mlig455_022409 {REF} {Length: 6827} {TRANSSPLICED} {Pfam: NACHT domain [PF05729.14, score=46.0]; Domain of unknown function (DUF4062) [PF13271.8, score=39.7]; Dpy-30 motif [PF05186.15, score=38.1]; AAA domain [PF13401.8, score=36.3]; AAA ATPase domain [PF13191.8, score=31.8]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=363, Expect=5e-101]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=362, Expect=8e-101]} {Dmel: FBgn0038397, CG10185, [Score=514, Expect=1e-151]} {Celegans: WBGene00020254, T05C3.2, [Score=507, Expect=6e-149]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=291, Expect=4e-79]} {RNA1509_23610} {RNA1310_451.1, RNA1509_23610} {RNA1509_23610, RNA815_2750}
4.	MligTC455_42033	3403	70.89	Mlig455_036579, Mlig455_057772	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.368	KLHDC2, KLHDC3	0.959	-	-	-	-	-	0.959	Mlig455_036579 {REF} {Length: 3037} {Pfam: Galactose oxidase, central domain [PF13418.8, score=91.4]; Galactose oxidase, central domain [PF13415.8, score=74.1]; Kelch motif [PF01344.27, score=64.2]; Kelch motif [PF13964.8, score=60.7]; Kelch motif [PF13854.8, score=57.8]; Kelch motif [PF07646.17, score=45.5]} {Human: ENSG00000124702, KLHDC3, kelch domain containing 3, [Score=75.5, Expect=2e-14]; ENSG00000165516, KLHDC2, kelch domain containing 2, [Score=73.2, Expect=6e-14]} {Mouse: ENSMUSG00000063576, Klhdc3, kelch domain containing 3, [Score=73.6, Expect=6e-14]; ENSMUSG00000020978, Klhdc2, kelch domain containing 2, [Score=72.4, Expect=1e-13]; ENSMUSG00000051890, Klhdc1, kelch domain containing 1, [Score=70.1, Expect=8e-13]} {Dmel: FBgn0034704, CG6758, [Score=62.0, Expect=3e-10]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [Score=68.2, Expect=3e-12]} {Smed: dd_Smed_v6_6196_0_1, dd_Smed_v6_6196_0_1, [Score=72.8, Expect=8e-14]} {RNA1509_52886} {RNA1310_14345.1} {RNA815_5318.1} Mlig455_057772 {REF} {Length: 2092} {Pfam: Galactose oxidase, central domain [PF13418.8, score=106.7]; Galactose oxidase, central domain [PF13415.8, score=85.2]; Kelch motif [PF13854.8, score=66.3]; Kelch motif [PF01344.27, score=64.0]; Kelch motif [PF13964.8, score=63.3]; Kelch motif [PF07646.17, score=44.8]} {Human: ENSG00000165516, KLHDC2, kelch domain containing 2, [Score=79.7, Expect=5e-16]} {Mouse: ENSMUSG00000020978, Klhdc2, kelch domain containing 2, [Score=76.3, Expect=1e-14]; ENSMUSG00000063576, Klhdc3, kelch domain containing 3, [Score=73.2, Expect=9e-14]} {Dmel: FBgn0034704, CG6758, [Score=62.0, Expect=5e-10]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [Score=68.9, Expect=3e-12]} {Smed: dd_Smed_v6_6196_0_1, dd_Smed_v6_6196_0_1, [Score=70.9, Expect=5e-13]} {RNA1509_24585, RNA1509_52886} {RNA1310_14345.1, RNA1509_24585, RNA1509_52886} {RNA1509_24585, RNA1509_52886, RNA815_5318.1}
5.	MligTC455_52468	516	10.76	Mlig455_064232	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.559	C11orf1	0.958	-	-	-	-	-	0.958	Mlig455_064232 {REF} {Length: 1198} {Pfam: Protein of unknown function (DUF1143) [PF06608.13, score=55.2]} {Human: ENSG00000137720, C11orf1, chromosome 11 open reading frame 1, [RH, Score=52.0, Expect=4e-09]} {Mouse: ENSMUSG00000037971, 1110032A03Rik, RIKEN cDNA 1110032A03 gene, [RH, Score=53.1, Expect=3e-09]} {RNA1509_29539} {RNA1310_48982, RNA1509_29539} {RNA1509_29539, RNA815_26980.2}
6.	MligTC455_29299	507	10.56	Mlig455_044328, Mlig455_046103, Mlig455_056418	Neo: - Age: -	CTNNAL1	0.956	-	-	-	-	-	0.956	Mlig455_044328 {REF} {Length: 3956} {Pfam: Vinculin family [PF01044.21, score=82.2]} {Human: ENSG00000119326, CTNNAL1, catenin alpha like 1, [Score=147, Expect=1e-37]} {Mouse: ENSMUSG00000038816, Ctnnal1, catenin (cadherin associated protein), alpha-like 1, [Score=155, Expect=6e-41]} {Dmel: FBgn0010215, alpha-Cat, alpha Catenin, [Score=99.0, Expect=2e-22]} {Celegans: WBGene00000832, ctn-1, Alpha-CaTuliN (Catenin/vinculin related), [Score=149, Expect=3e-39]} {RNA1509_23121} {RNA1310_18374, RNA1509_23121} {RNA1509_23121, RNA815_7469} Mlig455_046103 {REF} {Length: 3062} {Pfam: Phage integrase family [PF00589.24, score=25.7]} {RNA1509_19505} {RNA1310_407.2} {RNA815_3378} Mlig455_056418 {REF} {Length: 121} {NoTransDecoderORF} {RNA1509_19505} {RNA1310_2574} {RNA815_18445}
7.	MligTC455_14685	3975	82.82	Mlig455_051429	Neo: - Age: - Region-specific R2: 2.895 Region-enriched R2: 2.262/0.00004	PAM	0.954	-	-	-	-	-	0.954	Mlig455_051429 {REF} {Length: 1911} {Pfam: NHL repeat [PF01436.23, score=59.1]} {Human: ENSG00000145730, PAM, peptidylglycine alpha-amidating monooxygenase, [Score=119, Expect=2e-28]} {Mouse: ENSMUSG00000026335, Pam, peptidylglycine alpha-amidating monooxygenase, [Score=115, Expect=2e-27]} {Dmel: FBgn0262728, Pal2, Peptidyl-alpha-hydroxyglycine-alpha-amidating lyase 2, [Score=115, Expect=2e-28]} {Celegans: WBGene00017671, pgal-1, Probable peptidyl-alpha-hydroxyglycine alpha-amidating lyase pgal-1, [Score=125, Expect=2e-32]} {Smed: dd_Smed_v6_3093_0_1, dd_Smed_v6_3093_0_1, [Score=138, Expect=4e-37]} {RNA1509_910} {RNA1310_18216.1} {RNA815_736.1}
8.	MligTC455_43571	239	4.99	Mlig455_037843	Neo: - Age: Up-Down-Down		0.953	-	-	-	-	-	0.953	Mlig455_037843 {REF} {Length: 2732} {RNA1509_10285, RNA1509_47003} {RNA1310_32269, RNA1509_10285} {RNA1509_10285, RNA815_20576}
9.	MligTC455_54147	2046	42.63	Mlig455_062289	Neo: - Age: Down-Up-Down	DRC7	0.953	-	-	-	-	-	0.953	Mlig455_062289 {REF} {Length: 3093} {Human: ENSG00000159625, DRC7, dynein regulatory complex subunit 7, [Score=642, Expect=0.0]} {Mouse: ENSMUSG00000031786, Drc7, dynein regulatory complex subunit 7, [Score=629, Expect=0.0]} {Dmel: FBgn0083946, lobo, lost boys, [Score=226, Expect=1e-61]} {Smed: dd_Smed_v6_12588_0_1, dd_Smed_v6_12588_0_1, [Score=588, Expect=0.0]} {RNA1509_1230} {RNA1310_4483} {RNA815_1294}
10.	MligTC455_18696	206	4.3	Mlig455_018132	Neo: - Age: -	C2orf16	0.952	-	0.952	-	-	-	-	Mlig455_018132 {REF} {Length: 2438} {TRANSSPLICED} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=30.9]} {Human: ENSG00000221843, C2orf16, chromosome 2 open reading frame 16, [RH, Score=112, Expect=9e-25]; ENSG00000169249, ZRSR2, zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2, [RH, Score=109, Expect=1e-24]} {Mouse: ENSMUSG00000044068, Zrsr1, zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1, [RH, Score=113, Expect=2e-26]} {Dmel: FBgn0031628, CG3294, [RH, Score=110, Expect=2e-25]} {Celegans: WBGene00006698, uaf-2, U2AF splicing factor, [Score=79.0, Expect=5e-16]} {Smed: dd_Smed_v6_9455_0_3, dd_Smed_v6_9455_0_3, [RH, Score=133, Expect=6e-34]} {RNA1509_44063} {RNA1310_9280} {RNA815_19791.1}
11.	MligTC455_51896	205	4.26	Mlig455_008869	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.411	GCNT1	0.951	-	0.951	-	-	-	-	Mlig455_008869 {REF} {Length: 2273} {Pfam: Core-2/I-Branching enzyme [PF02485.23, score=142.0]} {Human: ENSG00000187210, GCNT1, glucosaminyl (N-acetyl) transferase 1, core 2, [RH, Score=191, Expect=7e-55]} {Mouse: ENSMUSG00000038843, Gcnt1, glucosaminyl (N-acetyl) transferase 1, core 2, [RH, Score=188, Expect=7e-54]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=79.3, Expect=3e-15]} {Celegans: WBGene00001626, gly-1, GLY-1; GLYcosylation related, [RH, Score=142, Expect=8e-37]} {Smed: dd_Smed_v6_6205_0_4, dd_Smed_v6_6205_0_4, [RH, Score=257, Expect=1e-80]} {RNA1509_14691} {RNA1310_16962} {RNA815_6581.1}

Berezikov Lab - 2020-2021 © ERIBA