TomoSeq data search

Data search

Results for MligTC455_33542

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_33542	769	16.01	Mlig455_033095, Mlig455_033124	Neo: - Age: Up-Down-Down	COL4A6	Mlig455_033095 {REF} {Length: 6587} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=627.1]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=216.8]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [RH, Score=519, Expect=1e-154]} {Mouse: ENSMUSG00000031503, Col4a2, collagen, type IV, alpha 2, [RH, Score=541, Expect=2e-162]; ENSMUSG00000116510, Col4a6, collagen, type IV, alpha 6, [RH, Score=516, Expect=6e-154]; ENSMUSG00000031273, Col4a6, collagen, type IV, alpha 6, [RH, Score=516, Expect=6e-154]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [RH, Score=728, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [RH, Score=618, Expect=0.0]} {Smed: dd_Smed_v6_7811_0_1, dd_Smed_v6_7811_0_1, [RH, Score=794, Expect=0.0]} {RNA1509_2320} {RNA1310_522, RNA1509_2320} {RNA1509_2320, RNA815_209} Mlig455_033124 {REF} {Length: 6566} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=622.4]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=216.8]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [RH, Score=513, Expect=4e-153]} {Mouse: ENSMUSG00000031503, Col4a2, collagen, type IV, alpha 2, [RH, Score=539, Expect=6e-162]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [RH, Score=728, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [RH, Score=614, Expect=0.0]} {Smed: dd_Smed_v6_7811_0_1, dd_Smed_v6_7811_0_1, [RH, Score=784, Expect=0.0]} {RNA1509_2320} {RNA1310_522} {RNA815_209}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_33542

769

16.01

Mlig455_033095, Mlig455_033124

Neo: -

Age: Up-Down-Down

COL4A6

Mlig455_033095 {REF} {Length: 6587} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=627.1]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=216.8]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [RH, Score=519, Expect=1e-154]} {Mouse: ENSMUSG00000031503, Col4a2, collagen, type IV, alpha 2, [RH, Score=541, Expect=2e-162]; ENSMUSG00000116510, Col4a6, collagen, type IV, alpha 6, [RH, Score=516, Expect=6e-154]; ENSMUSG00000031273, Col4a6, collagen, type IV, alpha 6, [RH, Score=516, Expect=6e-154]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [RH, Score=728, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [RH, Score=618, Expect=0.0]} {Smed: dd_Smed_v6_7811_0_1, dd_Smed_v6_7811_0_1, [RH, Score=794, Expect=0.0]} {RNA1509_2320} {RNA1310_522, RNA1509_2320} {RNA1509_2320, RNA815_209}

Mlig455_033124 {REF} {Length: 6566} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=622.4]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=216.8]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [RH, Score=513, Expect=4e-153]} {Mouse: ENSMUSG00000031503, Col4a2, collagen, type IV, alpha 2, [RH, Score=539, Expect=6e-162]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [RH, Score=728, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [RH, Score=614, Expect=0.0]} {Smed: dd_Smed_v6_7811_0_1, dd_Smed_v6_7811_0_1, [RH, Score=784, Expect=0.0]} {RNA1509_2320} {RNA1310_522} {RNA815_209}

Cumulative graph for MligTC455_33542

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.689	4.211	0.23938	0.88560
RegionR2	0.757	4.211	0.21435	0.58013
RegionR3	0.459	4.211	0.35185	0.88713
RegionR4	-0.847	4.211	0.18316	0.45469
RegionR5	-1.367	4.211	0.01351	0.07212
RegionR6	0.816	4.211	0.09387	0.56349
RegionR7	0.9	4.211	0.09761	0.59799
RegionR8	0.972	4.211	0.10509	0.60466

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.933	4.211	0.30143	0.99791
RegenerationR2	-0.305	4.211	0.58434	0.90859
RegenerationR3	-0.78	4.211	0.20386	0.63890
RegenerationR4	0.075	4.211	0.90855	1.00000
RegenerationR5	1.485	4.211	0.01569	0.21759
RegenerationR6	0.294	4.211	0.61305	0.87582
RegenerationBL	0.031	4.211	0.95674	1.00000
RegenerationTP	0.573	4.211	0.34452	0.78718

Genes with expression patterns similar to MligTC455_33542

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_33542	769	16.01	Mlig455_033095, Mlig455_033124	Neo: - Age: Up-Down-Down	COL4A6	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_033095 {REF} {Length: 6587} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=627.1]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=216.8]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [RH, Score=519, Expect=1e-154]} {Mouse: ENSMUSG00000031503, Col4a2, collagen, type IV, alpha 2, [RH, Score=541, Expect=2e-162]; ENSMUSG00000116510, Col4a6, collagen, type IV, alpha 6, [RH, Score=516, Expect=6e-154]; ENSMUSG00000031273, Col4a6, collagen, type IV, alpha 6, [RH, Score=516, Expect=6e-154]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [RH, Score=728, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [RH, Score=618, Expect=0.0]} {Smed: dd_Smed_v6_7811_0_1, dd_Smed_v6_7811_0_1, [RH, Score=794, Expect=0.0]} {RNA1509_2320} {RNA1310_522, RNA1509_2320} {RNA1509_2320, RNA815_209} Mlig455_033124 {REF} {Length: 6566} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=622.4]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=216.8]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [RH, Score=513, Expect=4e-153]} {Mouse: ENSMUSG00000031503, Col4a2, collagen, type IV, alpha 2, [RH, Score=539, Expect=6e-162]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [RH, Score=728, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [RH, Score=614, Expect=0.0]} {Smed: dd_Smed_v6_7811_0_1, dd_Smed_v6_7811_0_1, [RH, Score=784, Expect=0.0]} {RNA1509_2320} {RNA1310_522} {RNA815_209}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts