M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33689

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33689 368 7.67 Mlig455_043664

Neo: -

Age: Up-Down-Down

 GPD1 Mlig455_043664 {REF} {Length: 3473} {Pfam: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus [PF01210.25, score=136.9]; NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus [PF07479.16, score=128.6]} {Human: ENSG00000167588, GPD1, glycerol-3-phosphate dehydrogenase 1, [Score=358, Expect=4e-122]} {Mouse: ENSMUSG00000023019, Gpd1, glycerol-3-phosphate dehydrogenase 1 (soluble), [Score=359, Expect=7e-123]} {Dmel: FBgn0001128, Gpdh, Glycerol 3 phosphate dehydrogenase, [Score=338, Expect=2e-114]} {Celegans: WBGene00010778, gpdh-2, Probable glycerol-3-phosphate dehydrogenase 2, [Score=341, Expect=9e-116]} {Smed: dd_Smed_v6_2565_0_1, dd_Smed_v6_2565_0_1, [Score=362, Expect=5e-124]} {RNA1509_19004, RNA1509_56893} {RNA1310_14805, RNA1509_19004, RNA1509_56893} {RNA1509_19004, RNA1509_56893, RNA815_10562}

Cumulative graph for MligTC455_33689

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.737 3.345 0.54682 1.00000
RegionR2 0.748 3.345 0.22605 0.59668
RegionR3 0.013 3.345 0.97898 1.00000
RegionR4 0.977 3.345 0.08285 0.27113
RegionR5 -0.181 3.345 0.68703 1.00000
RegionR6 -0.685 3.345 0.19363 0.76106
RegionR7 -1.245 3.345 0.08655 0.56580
RegionR8 -0.364 3.345 0.63069 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.309 3.345 0.16223 0.90413
RegenerationR2 0.244 3.345 0.61889 0.92290
RegenerationR3 -0.222 3.345 0.70544 0.94985
RegenerationR4 -0.455 3.345 0.42902 0.83010
RegenerationR5 -0.033 3.345 0.95095 1.00000
RegenerationR6 0.454 3.345 0.48901 0.79848
RegenerationBL 0.042 3.345 0.96529 1.00000
RegenerationTP -0.51 3.345 0.57863 0.94893


Genes with expression patterns similar to MligTC455_33689

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33689 368 7.67 Mlig455_043664

Neo: -

Age: Up-Down-Down

 GPD1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_043664 {REF} {Length: 3473} {Pfam: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus [PF01210.25, score=136.9]; NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus [PF07479.16, score=128.6]} {Human: ENSG00000167588, GPD1, glycerol-3-phosphate dehydrogenase 1, [Score=358, Expect=4e-122]} {Mouse: ENSMUSG00000023019, Gpd1, glycerol-3-phosphate dehydrogenase 1 (soluble), [Score=359, Expect=7e-123]} {Dmel: FBgn0001128, Gpdh, Glycerol 3 phosphate dehydrogenase, [Score=338, Expect=2e-114]} {Celegans: WBGene00010778, gpdh-2, Probable glycerol-3-phosphate dehydrogenase 2, [Score=341, Expect=9e-116]} {Smed: dd_Smed_v6_2565_0_1, dd_Smed_v6_2565_0_1, [Score=362, Expect=5e-124]} {RNA1509_19004, RNA1509_56893} {RNA1310_14805, RNA1509_19004, RNA1509_56893} {RNA1509_19004, RNA1509_56893, RNA815_10562}
2. MligTC455_30281 503 10.47 Mlig455_008455, Mlig455_043742

Neo: -

Age: -

 SCN11A 0.97 - - 0.970 - - -

Mlig455_008455 {REF} {Length: 10354} {Pfam: Ion transport protein [PF00520.33, score=775.9]; Sodium ion transport-associated [PF06512.15, score=33.3]; Polycystin cation channel [PF08016.14, score=32.5]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=20.8]} {Human: ENSG00000168356, SCN11A, sodium voltage-gated channel alpha subunit 11, [RH, Score=1159, Expect=0.0]} {Mouse: ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [RH, Score=1349, Expect=0.0]} {Dmel: FBgn0285944, para, paralytic, [RH, Score=1102, Expect=0.0]} {Celegans: WBGene00000367, cca-1, Voltage-dependent T-type calcium channel subunit alpha, [Score=412, Expect=2e-117]} {Smed: dd_Smed_v6_13973_0_1, dd_Smed_v6_13973_0_1, [RH, Score=1383, Expect=0.0]} {RNA1509_5039} {RNA1310_554.1} {RNA815_3500.1}

Mlig455_043742 {REF} {Length: 591} {Smed: dd_Smed_v6_42647_0_1, dd_Smed_v6_42647_0_1, [RH, Score=47.0, Expect=2e-07]} {RNA1509_5039} {RNA1310_22320} {RNA815_4523.2}
3. MligTC455_12056 104 2.16 Mlig455_062444

Neo: -

Age: Down-Up-Down

 IGFALS 0.961 - - - - 0.961 - Mlig455_062444 {REF} {Length: 4624} {Pfam: Leucine rich repeat [PF13855.8, score=119.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=66.1]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=56.3]; Leucine-rich repeat [PF14580.8, score=29.8]; Leucine Rich Repeat [PF00560.35, score=22.9]} {Human: ENSG00000099769, IGFALS, insulin like growth factor binding protein acid labile subunit, [Score=82.8, Expect=2e-15]; ENSG00000255690, TRIL, TLR4 interactor with leucine rich repeats, [Score=82.4, Expect=2e-15]; ENSG00000139263, LRIG3, leucine rich repeats and immunoglobulin like domains 3, [Score=80.9, Expect=8e-15]} {Mouse: ENSMUSG00000051379, Flrt3, fibronectin leucine rich transmembrane protein 3, [RH, Score=83.2, Expect=7e-16]} {Dmel: FBgn0259677, CG42346, [Score=78.2, Expect=4e-14]} {Celegans: WBGene00020649, sma-10, Leucine-rich repeats and immunoglobulin-like domains protein sma-10, [Score=77.8, Expect=2e-14]} {Smed: dd_Smed_v6_13247_0_1, dd_Smed_v6_13247_0_1, [RH, Score=105, Expect=7e-23]} {RNA1509_11667} {RNA1310_3242, RNA1509_11667} {RNA1509_11667, RNA815_522}
4. MligTC455_20230 1282 26.71 Mlig455_003493, Mlig455_015562

Neo: -

Age: logFC(26M/2M)=-0.236

 FAM227A, FAM227B 0.952 - - - - 0.952 -

Mlig455_003493 {REF} {Length: 2231} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.0]} {Human: ENSG00000184949, FAM227A, family with sequence similarity 227 member A, [Score=111, Expect=2e-25]} {Mouse: ENSMUSG00000042564, Fam227a, family with sequence similarity 227, member A, [RH, Score=96.7, Expect=8e-21]; ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=93.6, Expect=6e-20]} {Smed: dd_Smed_v6_15102_0_3, dd_Smed_v6_15102_0_3, [Score=157, Expect=3e-42]} {RNA1509_44428} {RNA1310_6983.2} {RNA815_5876}

Mlig455_015562 {REF} {Length: 2171} {TRANSSPLICED} {Pfam: Protein of unknown function [PF14922.8, score=146.7]} {Human: ENSG00000166262, FAM227B, family with sequence similarity 227 member B, [RH, Score=107, Expect=2e-24]} {Mouse: ENSMUSG00000027209, Fam227b, family with sequence similarity 227, member B, [RH, Score=98.6, Expect=1e-21]} {Smed: dd_Smed_v6_15102_0_7, dd_Smed_v6_15102_0_7, [Score=178, Expect=5e-50]} {RNA1509_58462} {RNA1310_11701} {RNA815_12354}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA