TomoSeq data search

Data search

Results for MligTC455_33702

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_33702	18	0.37	Mlig455_002443	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.444	COL5A2	Mlig455_002443 {REF} {Length: 3611} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=135.1]; Myotubularin protein [PF12335.10, score=23.4]} {Human: ENSG00000204262, COL5A2, collagen type V alpha 2 chain, [Score=134, Expect=5e-31]} {Mouse: ENSMUSG00000026042, Col5a2, collagen, type V, alpha 2, [Score=144, Expect=2e-34]; ENSMUSG00000028197, Col24a1, collagen, type XXIV, alpha 1, [Score=139, Expect=8e-33]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=116, Expect=5e-26]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=80.9, Expect=4e-15]} {Smed: dd_Smed_v6_832_0_1, dd_Smed_v6_832_0_1, [Score=162, Expect=2e-40]} {RNA1310_28728} {RNA815_16863}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_33702

0.37

Mlig455_002443

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.444

COL5A2

Mlig455_002443 {REF} {Length: 3611} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=135.1]; Myotubularin protein [PF12335.10, score=23.4]} {Human: ENSG00000204262, COL5A2, collagen type V alpha 2 chain, [Score=134, Expect=5e-31]} {Mouse: ENSMUSG00000026042, Col5a2, collagen, type V, alpha 2, [Score=144, Expect=2e-34]; ENSMUSG00000028197, Col24a1, collagen, type XXIV, alpha 1, [Score=139, Expect=8e-33]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=116, Expect=5e-26]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=80.9, Expect=4e-15]} {Smed: dd_Smed_v6_832_0_1, dd_Smed_v6_832_0_1, [Score=162, Expect=2e-40]} {RNA1310_28728} {RNA815_16863}

Cumulative graph for MligTC455_33702

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.215	0.826	0.99985	1.00000
RegionR2	2.127	0.826	0.30577	0.69636
RegionR3	1.845	0.826	0.14346	0.64493
RegionR4	1.478	0.826	0.66991	0.96676
RegionR5	-0.228	0.826	0.80668	1.00000
RegionR6	0.075	0.826	0.71267	1.00000
RegionR7	-2.005	0.826	0.99952	1.00000
RegionR8	-2.076	0.826	0.99950	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	4.142	0.826	0.99987	1.00000
RegenerationR2	2.197	0.826	0.06809	0.42576
RegenerationR3	1.784	0.826	0.12968	0.55265
RegenerationR4	1.092	0.826	0.26865	0.71514
RegenerationR5	1.74	0.826	0.14448	0.55959
RegenerationR6	1.38	0.826	0.92301	1.00000
RegenerationBL	3.051	0.826	0.99980	1.00000
RegenerationTP	5.731	0.826	0.01931	0.23841

Genes with expression patterns similar to MligTC455_33702

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_33702	18	0.37	Mlig455_002443	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.444	COL5A2	2	1.000	1.000	-	-	-	-	Mlig455_002443 {REF} {Length: 3611} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=135.1]; Myotubularin protein [PF12335.10, score=23.4]} {Human: ENSG00000204262, COL5A2, collagen type V alpha 2 chain, [Score=134, Expect=5e-31]} {Mouse: ENSMUSG00000026042, Col5a2, collagen, type V, alpha 2, [Score=144, Expect=2e-34]; ENSMUSG00000028197, Col24a1, collagen, type XXIV, alpha 1, [Score=139, Expect=8e-33]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=116, Expect=5e-26]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=80.9, Expect=4e-15]} {Smed: dd_Smed_v6_832_0_1, dd_Smed_v6_832_0_1, [Score=162, Expect=2e-40]} {RNA1310_28728} {RNA815_16863}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts